cdmlib.git
12 years agoadd vernacular and specimens to Markup features
Andreas Müller [Wed, 15 Feb 2012 17:38:20 +0000 (17:38 +0000)]
add vernacular and specimens to Markup features

12 years agoremove import
Andreas Müller [Wed, 15 Feb 2012 12:40:55 +0000 (12:40 +0000)]
remove import

12 years agoadding uniqueVersion=false to pom - removing duplicate
Andreas Kohlbecker [Wed, 15 Feb 2012 11:40:14 +0000 (11:40 +0000)]
adding uniqueVersion=false to pom - removing duplicate

12 years agoadding uniqueVersion=false to pom
Andreas Kohlbecker [Wed, 15 Feb 2012 11:36:50 +0000 (11:36 +0000)]
adding uniqueVersion=false to pom

12 years agoignore not working taxon delete with config test
Andreas Müller [Wed, 15 Feb 2012 00:03:31 +0000 (00:03 +0000)]
ignore not working taxon delete with config test

12 years agobugfix for compile error in nameCacheStrategy
Andreas Müller [Tue, 14 Feb 2012 23:01:35 +0000 (23:01 +0000)]
bugfix for compile error in nameCacheStrategy

12 years agodelete methods for taxon service (not fully functional yet)
Andreas Müller [Tue, 14 Feb 2012 22:17:55 +0000 (22:17 +0000)]
delete methods for taxon service (not fully functional yet)

12 years agominor test changes, also with commented deleteDataCreation
Andreas Müller [Tue, 14 Feb 2012 22:16:40 +0000 (22:16 +0000)]
minor test changes, also with commented deleteDataCreation

12 years agoadd html tagged full title
Andreas Müller [Tue, 14 Feb 2012 16:43:20 +0000 (16:43 +0000)]
add html tagged full title

12 years agoadd html tagged full title
Andreas Müller [Tue, 14 Feb 2012 16:41:57 +0000 (16:41 +0000)]
add html tagged full title

12 years agoremove bracket factory methods (brackets should be part of the name)
Andreas Müller [Tue, 14 Feb 2012 16:19:14 +0000 (16:19 +0000)]
remove bracket factory methods (brackets should be part of the name)

12 years agoadd brackets to infraGeneric epi part
Andreas Müller [Tue, 14 Feb 2012 16:18:28 +0000 (16:18 +0000)]
add brackets to infraGeneric epi part

12 years agopreliminary ignore failing (in suite) delete tests
Andreas Müller [Tue, 14 Feb 2012 15:52:49 +0000 (15:52 +0000)]
preliminary ignore failing (in suite) delete tests

12 years agopreliminary ignore failing (in suite) delete tests
Andreas Müller [Tue, 14 Feb 2012 15:25:26 +0000 (15:25 +0000)]
preliminary ignore failing (in suite) delete tests

12 years agochange logging levels for find zoologicalName
Andreas Müller [Tue, 14 Feb 2012 14:32:47 +0000 (14:32 +0000)]
change logging levels for find zoologicalName

12 years agomove inferred synonyms to service layer
Andreas Müller [Tue, 14 Feb 2012 14:31:08 +0000 (14:31 +0000)]
move inferred synonyms to service layer

12 years agomove inferred synonyms to service layer
Andreas Müller [Tue, 14 Feb 2012 14:24:42 +0000 (14:24 +0000)]
move inferred synonyms to service layer

12 years agomove inferred synonyms to service layer
Andreas Müller [Tue, 14 Feb 2012 14:19:58 +0000 (14:19 +0000)]
move inferred synonyms to service layer

12 years agoCorrect override for getTitleCache with html tag rule
Andreas Müller [Tue, 14 Feb 2012 13:50:51 +0000 (13:50 +0000)]
Correct override for getTitleCache with html tag rule

12 years agomove override method in base class
Andreas Müller [Tue, 14 Feb 2012 13:48:07 +0000 (13:48 +0000)]
move override method in base class

12 years agotest again with override
Andreas Müller [Tue, 14 Feb 2012 13:44:37 +0000 (13:44 +0000)]
test again with override

12 years agoadd html tagged title cache generation for NonViralNames
Andreas Müller [Tue, 14 Feb 2012 13:24:58 +0000 (13:24 +0000)]
add html tagged title cache generation for NonViralNames

12 years agominor
Andreas Müller [Tue, 14 Feb 2012 09:34:42 +0000 (09:34 +0000)]
minor

12 years agominor refactoring of cache name cache strategies and create ZooNameNoMarkerCacheStrategy
Andreas Müller [Tue, 14 Feb 2012 09:33:14 +0000 (09:33 +0000)]
minor refactoring of cache name cache strategies and create ZooNameNoMarkerCacheStrategy

12 years agominor javadoc
Andreas Müller [Tue, 14 Feb 2012 08:57:29 +0000 (08:57 +0000)]
minor javadoc

12 years agolatest changes for PESI im/export
Andreas Müller [Mon, 13 Feb 2012 21:35:34 +0000 (21:35 +0000)]
latest changes for PESI im/export

12 years agoinclude lang
Andreas Müller [Fri, 10 Feb 2012 17:16:48 +0000 (17:16 +0000)]
include lang

12 years agolatest PESI export developments
Andreas Müller [Fri, 10 Feb 2012 15:10:03 +0000 (15:10 +0000)]
latest PESI export developments

12 years agocleanup
Andreas Müller [Fri, 10 Feb 2012 12:04:44 +0000 (12:04 +0000)]
cleanup

12 years agominor
Andreas Müller [Fri, 10 Feb 2012 12:00:14 +0000 (12:00 +0000)]
minor

12 years agoadd language mapper and single source mapper
Andreas Müller [Fri, 10 Feb 2012 11:57:36 +0000 (11:57 +0000)]
add language mapper and single source mapper

12 years agoadded sp. nov. ined. and nom. & cons. ined. nomenclatural status
Andreas Müller [Thu, 9 Feb 2012 09:59:50 +0000 (09:59 +0000)]
added sp. nov. ined. and nom. & cons. ined. nomenclatural status

12 years agoSpell Sicily correctly (#2766)
Andreas Müller [Tue, 7 Feb 2012 16:49:11 +0000 (16:49 +0000)]
Spell Sicily correctly (#2766)

12 years agobugfix (?) for compile error
Andreas Müller [Tue, 7 Feb 2012 15:24:30 +0000 (15:24 +0000)]
bugfix (?) for compile error

12 years agoLatest changes for PESI export and introduce transformers in export mappings
Andreas Müller [Tue, 7 Feb 2012 12:25:13 +0000 (12:25 +0000)]
Latest changes for PESI export and introduce transformers in export mappings

12 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Mon, 6 Feb 2012 15:00:19 +0000 (15:00 +0000)]
[maven-release-plugin] prepare for next development iteration

12 years ago[maven-release-plugin] prepare release cdmlib-parent-3.0.9 root/tags/cdmlib/cdmlib-parent-3.0.9 cdmlib-parent-3.0.9
edit-jenkins [Mon, 6 Feb 2012 15:00:16 +0000 (15:00 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.0.9

12 years agoremove imports
Andreas Müller [Mon, 6 Feb 2012 11:53:01 +0000 (11:53 +0000)]
remove imports

12 years agojavadoc
Andreas Müller [Mon, 6 Feb 2012 11:49:15 +0000 (11:49 +0000)]
javadoc

12 years agominor
Andreas Müller [Thu, 2 Feb 2012 23:10:21 +0000 (23:10 +0000)]
minor

12 years agominor
Andreas Müller [Thu, 2 Feb 2012 22:53:58 +0000 (22:53 +0000)]
minor

12 years agobugfix for stateData.modifyingText (#2760)
Andreas Müller [Thu, 2 Feb 2012 22:42:48 +0000 (22:42 +0000)]
bugfix for stateData.modifyingText (#2760)

12 years agoremove imports
Andreas Müller [Thu, 2 Feb 2012 15:48:22 +0000 (15:48 +0000)]
remove imports

12 years agobugfix for status duplication in name parser (#2750)
Andreas Müller [Thu, 2 Feb 2012 13:41:46 +0000 (13:41 +0000)]
bugfix for status duplication in name parser (#2750)

12 years agoExposes a bug in the NonViralNameParser: Multiple parsing of names with nomenclatural...
l.morris [Wed, 1 Feb 2012 15:51:27 +0000 (15:51 +0000)]
Exposes a bug in the NonViralNameParser: Multiple parsing of names with nomenclatural status will duplicate the status

12 years agofixing again the search for misapplied names. adapting the tests
Katja Luther [Wed, 1 Feb 2012 13:02:42 +0000 (13:02 +0000)]
fixing again the search for misapplied names. adapting the tests

12 years agotest cases commented
Katja Luther [Wed, 1 Feb 2012 10:49:43 +0000 (10:49 +0000)]
test cases commented

12 years ago(no commit message)
Katja Luther [Tue, 31 Jan 2012 10:38:40 +0000 (10:38 +0000)]

12 years agoTicket #2648
Katja Luther [Tue, 31 Jan 2012 09:06:16 +0000 (09:06 +0000)]
Ticket #2648

12 years agoignoring test
Andreas Kohlbecker [Thu, 26 Jan 2012 14:48:47 +0000 (14:48 +0000)]
ignoring test

12 years agotest modified to reproduce bug in #2648 (search for misapplied names implemented)
Andreas Kohlbecker [Thu, 26 Jan 2012 11:08:47 +0000 (11:08 +0000)]
test modified to reproduce bug in #2648 (search for misapplied names implemented)

12 years agominor
Andreas Müller [Wed, 25 Jan 2012 16:21:14 +0000 (16:21 +0000)]
minor

12 years agosome small improvements for PESI export
Andreas Müller [Wed, 25 Jan 2012 15:46:29 +0000 (15:46 +0000)]
some small improvements for PESI export

12 years agoone more generic
Andreas Müller [Wed, 25 Jan 2012 14:25:59 +0000 (14:25 +0000)]
one more generic

12 years agoone more generic
Andreas Müller [Wed, 25 Jan 2012 14:22:31 +0000 (14:22 +0000)]
one more generic

12 years agominor
Andreas Müller [Wed, 25 Jan 2012 14:11:14 +0000 (14:11 +0000)]
minor

12 years agobugfix for taxon name id mapping in PESI
Andreas Müller [Wed, 25 Jan 2012 14:05:51 +0000 (14:05 +0000)]
bugfix for taxon name id mapping in PESI

12 years agobetter debugging for method mapper
Andreas Müller [Tue, 24 Jan 2012 17:23:16 +0000 (17:23 +0000)]
better debugging for method mapper

12 years agobugfix for MA workaround
Andreas Müller [Tue, 24 Jan 2012 16:13:55 +0000 (16:13 +0000)]
bugfix for MA workaround

12 years agodirty workaround bugfix for #2743
Andreas Müller [Tue, 24 Jan 2012 14:56:17 +0000 (14:56 +0000)]
dirty workaround bugfix for #2743

12 years ago(no commit message)
Katja Luther [Tue, 24 Jan 2012 12:33:30 +0000 (12:33 +0000)]

12 years agoadd a test for a search only for misapplied names
Katja Luther [Mon, 23 Jan 2012 10:50:43 +0000 (10:50 +0000)]
add a test for a search only for misapplied names

12 years agofix for #2648
Katja Luther [Mon, 23 Jan 2012 10:46:56 +0000 (10:46 +0000)]
fix for #2648

12 years agocircumventing persisting problems in test
Andreas Kohlbecker [Thu, 19 Jan 2012 14:21:49 +0000 (14:21 +0000)]
circumventing persisting problems in test

12 years agoadd switch species group
Andreas Müller [Thu, 19 Jan 2012 14:17:26 +0000 (14:17 +0000)]
add switch species group

12 years agoadd switch species group
Andreas Müller [Thu, 19 Jan 2012 14:17:02 +0000 (14:17 +0000)]
add switch species group

12 years agotest to reproduce bug in #2648 (search for misapplied names implemented)
Andreas Kohlbecker [Thu, 19 Jan 2012 14:04:56 +0000 (14:04 +0000)]
test to reproduce bug in #2648 (search for misapplied names implemented)

12 years agofixing bug in bugfix for #2648, also fixing tests
Andreas Kohlbecker [Thu, 19 Jan 2012 12:59:08 +0000 (12:59 +0000)]
fixing bug in bugfix for  #2648, also fixing tests

12 years agofixing bug in #2648: search for misapplied names implemented
Andreas Kohlbecker [Thu, 19 Jan 2012 12:04:41 +0000 (12:04 +0000)]
fixing bug in #2648: search for misapplied names implemented

12 years agobugfix (#2648)
Katja Luther [Thu, 19 Jan 2012 11:07:54 +0000 (11:07 +0000)]
bugfix (#2648)

12 years agotest to reproduce bug in misapplied name search
Andreas Kohlbecker [Thu, 19 Jan 2012 10:22:02 +0000 (10:22 +0000)]
test to reproduce bug in misapplied name search

12 years agoremove whitespace
Andreas Müller [Wed, 18 Jan 2012 17:57:51 +0000 (17:57 +0000)]
remove whitespace

12 years agohandling blank strings as null
Andreas Müller [Wed, 18 Jan 2012 14:20:04 +0000 (14:20 +0000)]
handling blank strings as null

12 years agominor
Andreas Müller [Wed, 18 Jan 2012 12:18:15 +0000 (12:18 +0000)]
minor

12 years agominor logging improvements
Andreas Müller [Wed, 18 Jan 2012 12:17:27 +0000 (12:17 +0000)]
minor logging improvements

12 years agominor logging improvement
Andreas Müller [Wed, 18 Jan 2012 10:02:22 +0000 (10:02 +0000)]
minor logging improvement

12 years agominor (logging)
Andreas Müller [Mon, 16 Jan 2012 15:17:22 +0000 (15:17 +0000)]
minor (logging)

12 years agominor (logging)
Andreas Müller [Mon, 16 Jan 2012 15:15:04 +0000 (15:15 +0000)]
minor (logging)

12 years ago(no commit message)
n.hoffmann [Mon, 16 Jan 2012 10:50:40 +0000 (10:50 +0000)]

12 years agolaunch configs updated to new runjettyrun version
Andreas Kohlbecker [Fri, 13 Jan 2012 16:31:39 +0000 (16:31 +0000)]
launch configs updated to new runjettyrun version

12 years agodocumentation
Andreas Kohlbecker [Fri, 13 Jan 2012 16:27:29 +0000 (16:27 +0000)]
documentation

12 years agofixing bug associated with getTaxaByCommonName(); benchmarking taxa by common name...
Andreas Kohlbecker [Fri, 13 Jan 2012 15:05:35 +0000 (15:05 +0000)]
fixing bug associated with getTaxaByCommonName(); benchmarking taxa by common name hql vs lucene

12 years agoexclude updated_when from TaxonName
Andreas Müller [Fri, 13 Jan 2012 10:35:48 +0000 (10:35 +0000)]
exclude updated_when from TaxonName

12 years agoObject change mapper for PESI and empty epithet bugfix and empty hybrid formula bugfix
Andreas Müller [Fri, 13 Jan 2012 09:48:13 +0000 (09:48 +0000)]
Object change mapper for PESI and empty epithet bugfix and empty hybrid formula bugfix

12 years agohibernate fulltext search & refactoring getTaxaByName*() method headers
Andreas Kohlbecker [Thu, 12 Jan 2012 17:09:10 +0000 (17:09 +0000)]
hibernate fulltext search & refactoring getTaxaByName*() method headers

12 years agomove DbExportMappers to common.mapping.out
Andreas Müller [Thu, 12 Jan 2012 12:13:38 +0000 (12:13 +0000)]
move DbExportMappers to common.mapping.out

12 years agorefactor export mapping
Andreas Müller [Thu, 12 Jan 2012 12:04:29 +0000 (12:04 +0000)]
refactor export mapping

12 years agocountTaxaByName harmonized with find method (replace Class <? extends TaxonBase>...
Katja Luther [Thu, 12 Jan 2012 11:17:22 +0000 (11:17 +0000)]
countTaxaByName harmonized with find method (replace Class <? extends TaxonBase> parameter with boolean parameters for synonyms, taxa and misapplied names)

12 years agobugfix compile error in SOurce
Andreas Müller [Thu, 12 Jan 2012 09:47:41 +0000 (09:47 +0000)]
bugfix compile error in SOurce

12 years agominor
Andreas Müller [Wed, 11 Jan 2012 17:32:14 +0000 (17:32 +0000)]
minor

12 years agomore generic for export io classes
Andreas Müller [Wed, 11 Jan 2012 16:57:22 +0000 (16:57 +0000)]
more generic for export io classes

12 years agosome library updates for PESI export
Andreas Müller [Wed, 11 Jan 2012 16:20:36 +0000 (16:20 +0000)]
some library updates for PESI export

12 years agoreturn type for getTaggedText
Andreas Müller [Wed, 11 Jan 2012 16:19:56 +0000 (16:19 +0000)]
return type for getTaggedText

12 years agoconvenience methods to TaggedText and TagEnum
Andreas Müller [Wed, 11 Jan 2012 16:19:30 +0000 (16:19 +0000)]
convenience methods to TaggedText and TagEnum

12 years agotoString for TaggedText
Andreas Müller [Wed, 11 Jan 2012 14:53:51 +0000 (14:53 +0000)]
toString for TaggedText

12 years agochanges for bugs and problems in search for misapplied names (#2648)
Katja Luther [Wed, 11 Jan 2012 10:50:00 +0000 (10:50 +0000)]
changes for bugs and problems in search for misapplied names (#2648)

12 years agouse io application controler
Andreas Müller [Wed, 11 Jan 2012 09:39:30 +0000 (09:39 +0000)]
use io application controler

12 years agominor
Andreas Müller [Tue, 10 Jan 2012 14:06:24 +0000 (14:06 +0000)]
minor

12 years agobetter logging for occurrences missing source number
Andreas Müller [Tue, 10 Jan 2012 13:36:37 +0000 (13:36 +0000)]
better logging for occurrences missing source number

12 years agoAdded MODIFIABLE to MarkerType and MarkerType.csv
l.morris [Tue, 10 Jan 2012 10:06:52 +0000 (10:06 +0000)]
Added MODIFIABLE to MarkerType and MarkerType.csv