cdmlib.git
6 years agoMerge branch 'release/5.0.0' 5.0.0
jenkins [Thu, 17 May 2018 09:41:12 +0000 (11:41 +0200)]
Merge branch 'release/5.0.0'

6 years agoupdating poms for branch'release/5.0.0' with non-snapshot versions
jenkins [Thu, 17 May 2018 09:23:45 +0000 (11:23 +0200)]
updating poms for branch'release/5.0.0' with non-snapshot versions

6 years agochange version from 4.15 => 5.0 in cdmlib release origin/release/4.15.0
Andreas Müller [Thu, 17 May 2018 08:48:12 +0000 (10:48 +0200)]
change version from 4.15 => 5.0 in cdmlib release

6 years agoref #6752, ref #6627 fill verbatimDate in CDM light
Andreas Müller [Thu, 17 May 2018 08:32:55 +0000 (10:32 +0200)]
ref #6752, ref #6627 fill verbatimDate in CDM light

6 years agoref #6752 fix NPE in VerbatimTimePeriod parser
Andreas Müller [Wed, 16 May 2018 21:47:25 +0000 (23:47 +0200)]
ref #6752 fix NPE in VerbatimTimePeriod parser

6 years agoref #6752 stricter handling of Reference.setDatePublished (only for calling methods)
Andreas Müller [Wed, 16 May 2018 21:11:29 +0000 (23:11 +0200)]
ref #6752 stricter handling of Reference.setDatePublished (only for calling methods)

6 years agocleanup
Andreas Müller [Wed, 16 May 2018 20:58:57 +0000 (22:58 +0200)]
cleanup

6 years agoref #6752 first implementation of VerbatimTimePeriod parser
Andreas Müller [Wed, 16 May 2018 13:05:33 +0000 (15:05 +0200)]
ref #6752 first implementation of VerbatimTimePeriod parser

6 years agoref #6752 toString for VerbatimTimePeriod
Andreas Müller [Wed, 16 May 2018 12:27:42 +0000 (14:27 +0200)]
ref #6752 toString for VerbatimTimePeriod

6 years agoref #6752 strictly use VerbatimTimePeriod where possible
Andreas Müller [Wed, 16 May 2018 12:21:30 +0000 (14:21 +0200)]
ref #6752 strictly use VerbatimTimePeriod where possible

6 years agoref #7334 error handling in update script for pp synonyms
Andreas Müller [Wed, 16 May 2018 12:20:11 +0000 (14:20 +0200)]
ref #7334 error handling in update script for pp synonyms

6 years agoref #6752 strictly use VerbatimTimePeriod where possible
Andreas Müller [Wed, 16 May 2018 12:18:49 +0000 (14:18 +0200)]
ref #6752 strictly use VerbatimTimePeriod where possible

6 years agoref #7334, ref #6627 Adapted CDM light to support pp synonyms (cont.)
Andreas Müller [Wed, 16 May 2018 12:13:38 +0000 (14:13 +0200)]
ref #7334, ref #6627 Adapted CDM light to support pp synonyms (cont.)

6 years agoadd also partial misappliedNames to computeMisapliedNameRelations
Katja Luther [Wed, 16 May 2018 11:19:53 +0000 (13:19 +0200)]
add also partial misappliedNames to computeMisapliedNameRelations

6 years agojavadoc
Patrick Plitzner [Tue, 15 May 2018 17:08:39 +0000 (19:08 +0200)]
javadoc

6 years agoref #7334 update cached model for removed partial and pro parte
Andreas Müller [Tue, 15 May 2018 16:20:26 +0000 (18:20 +0200)]
ref #7334 update cached model for removed partial and pro parte

6 years agoref #7335, ref #7334 remove getProParteSynonyms method (is more or less duplicate)
Andreas Müller [Tue, 15 May 2018 16:19:45 +0000 (18:19 +0200)]
ref #7335, ref #7334 remove getProParteSynonyms method (is more or less duplicate)

6 years agoref #7334 remove proParte and partial from Synonym class
Andreas Müller [Tue, 15 May 2018 15:13:46 +0000 (17:13 +0200)]
ref #7334 remove proParte and partial from Synonym class

6 years agoref #7334 adapt DwCA and CDM light export to new pro parte synonym handling, also...
Andreas Müller [Tue, 15 May 2018 15:12:57 +0000 (17:12 +0200)]
ref #7334 adapt DwCA and CDM light export to new pro parte synonym handling, also add misapplied name handling to CDM light

6 years agoref #7334 add convenience methods for pro parte and partial synonym to Taxon and...
Andreas Müller [Tue, 15 May 2018 15:11:47 +0000 (17:11 +0200)]
ref #7334 add convenience methods for pro parte and partial synonym to Taxon and TaxonRelationshipType

6 years agoadd annoations to FullCoverageDataGenerator Registration
Andreas Müller [Tue, 15 May 2018 15:09:05 +0000 (17:09 +0200)]
add annoations to FullCoverageDataGenerator Registration

6 years agoadd partial misapplied name to test data
Andreas Müller [Tue, 15 May 2018 15:07:41 +0000 (17:07 +0200)]
add partial misapplied name to test data

6 years agoremove createSynonym method
Katja Luther [Tue, 15 May 2018 10:03:20 +0000 (12:03 +0200)]
remove createSynonym method

6 years agoadd methods for Pro Parte synonyms
Katja Luther [Tue, 15 May 2018 09:59:51 +0000 (11:59 +0200)]
add methods for Pro Parte synonyms

6 years agoref #7362 Add service method which also saves the new feature
Patrick Plitzner [Tue, 15 May 2018 08:29:45 +0000 (10:29 +0200)]
ref #7362 Add service method which also saves the new feature

6 years agoref #6526 Fix generics of comparator
Patrick Plitzner [Mon, 14 May 2018 15:48:02 +0000 (17:48 +0200)]
ref #6526 Fix generics of comparator

6 years agoref #6588 include ExternalLink in FullCoverageDataGenerator and some new factory...
Andreas Müller [Mon, 14 May 2018 15:38:10 +0000 (17:38 +0200)]
ref #6588 include ExternalLink in FullCoverageDataGenerator and some new factory method

6 years agocleanup
Andreas Müller [Mon, 14 May 2018 15:25:42 +0000 (17:25 +0200)]
cleanup

6 years agoAdd SchemaUpdater_50_51 and remove mediaCreatedOld (ref #7414)
Andreas Müller [Mon, 14 May 2018 13:53:28 +0000 (15:53 +0200)]
Add SchemaUpdater_50_51 and remove mediaCreatedOld (ref #7414)

6 years agoref #6699 update script for delete term version
Andreas Müller [Mon, 14 May 2018 13:11:30 +0000 (15:11 +0200)]
ref #6699 update script for delete term version

6 years agoref #2335 add DTYPE update to DescriptiveDataSet renaming
Andreas Müller [Mon, 14 May 2018 12:35:21 +0000 (14:35 +0200)]
ref #2335  add DTYPE update to DescriptiveDataSet renaming

6 years agoadd createsynonym method to service
Katja Luther [Mon, 14 May 2018 12:09:18 +0000 (14:09 +0200)]
add createsynonym method to service

6 years agofix typo in uuidAndTitleCacheTaxonComparator
Katja Luther [Mon, 14 May 2018 11:58:13 +0000 (13:58 +0200)]
fix typo in uuidAndTitleCacheTaxonComparator

6 years agominor changes for CdmModelCacher
Andreas Müller [Mon, 14 May 2018 11:51:19 +0000 (13:51 +0200)]
minor changes for CdmModelCacher

6 years agoref #7109 update test data for nom. val. and in parser
Andreas Müller [Mon, 14 May 2018 11:47:38 +0000 (13:47 +0200)]
ref #7109 update test data for nom. val. and in parser

6 years agoadd service for creation of synonyms (fixing saving of hybrids)
Katja Luther [Mon, 14 May 2018 11:06:53 +0000 (13:06 +0200)]
add service for creation of synonyms (fixing saving of hybrids)

6 years agoworkaround for very strange max(id) behavior in remote-webapp H2 test database
Andreas Müller [Mon, 14 May 2018 08:31:03 +0000 (10:31 +0200)]
workaround for very strange max(id) behavior in remote-webapp H2 test database

6 years agocleanup
Andreas Müller [Mon, 14 May 2018 08:29:48 +0000 (10:29 +0200)]
cleanup

6 years agoupdate CDM model cache (cdm.map.ser) to 5.0
Andreas Müller [Mon, 14 May 2018 08:29:11 +0000 (10:29 +0200)]
update CDM model cache (cdm.map.ser) to 5.0

6 years agoupdate H2 Test DB in remote webapp
Andreas Müller [Sat, 12 May 2018 10:39:37 +0000 (12:39 +0200)]
update H2 Test DB in remote webapp

6 years agoref #6588 adapt fix test schema
Andreas Müller [Sat, 12 May 2018 03:05:54 +0000 (05:05 +0200)]
ref #6588 adapt fix test schema

6 years agoref #6588 adapt test schema to originalsource.links and externallink.linktype
Andreas Müller [Sat, 12 May 2018 02:36:11 +0000 (04:36 +0200)]
ref #6588 adapt test schema to originalsource.links and externallink.linktype

6 years agoref #6588 fix OriginalSourceBase.clone
Andreas Müller [Sat, 12 May 2018 02:16:03 +0000 (04:16 +0200)]
ref #6588 fix OriginalSourceBase.clone

6 years agoref #7074 fix tests failing due to stricter format checking in Partial UserType
Andreas Müller [Sat, 12 May 2018 02:05:33 +0000 (04:05 +0200)]
ref #7074 fix tests failing due to stricter format checking in Partial UserType

6 years agoref #6588 add jaxb mapping to ExternalLink related
Andreas Müller [Sat, 12 May 2018 01:45:32 +0000 (03:45 +0200)]
ref #6588 add jaxb mapping to ExternalLink related

6 years agorevert SetSubtreePartitioner
Andreas Müller [Sat, 12 May 2018 01:40:32 +0000 (03:40 +0200)]
revert SetSubtreePartitioner

6 years agopartly revert TestModelUpdate changes
Andreas Müller [Sat, 12 May 2018 01:38:52 +0000 (03:38 +0200)]
partly revert TestModelUpdate changes

6 years agoref #7074 fix mediaCreated test data schema
Andreas Müller [Sat, 12 May 2018 01:32:54 +0000 (03:32 +0200)]
ref #7074 fix mediaCreated test data schema

6 years agoref #2335 fix table name for rights MN
Andreas Müller [Sat, 12 May 2018 01:05:03 +0000 (03:05 +0200)]
ref #2335 fix table name for rights MN

6 years agoref #6361 try to fix LSIDAuthority_namespaces for TaxonName
Andreas Müller [Sat, 12 May 2018 00:49:24 +0000 (02:49 +0200)]
ref #6361 try to fix LSIDAuthority_namespaces for TaxonName

6 years agominor
Andreas Müller [Sat, 12 May 2018 00:06:29 +0000 (02:06 +0200)]
minor

6 years agoadd TermRepresentationAdder (not needed yet, untested) implemented for #7334
Andreas Müller [Sat, 12 May 2018 00:04:31 +0000 (02:04 +0200)]
add TermRepresentationAdder (not needed yet, untested) implemented for #7334

6 years agofix #7334 update script for pro parte synonyms to concept relationships
Andreas Müller [Sat, 12 May 2018 00:03:20 +0000 (02:03 +0200)]
fix #7334 update script for pro parte synonyms to concept relationships

6 years agocleanup
Andreas Müller [Sat, 12 May 2018 00:01:02 +0000 (02:01 +0200)]
cleanup

6 years agofix empty values in csvLine reading
Andreas Müller [Fri, 11 May 2018 23:58:42 +0000 (01:58 +0200)]
fix empty values in csvLine reading

6 years agofix #7074 Change Media.mediaCreated to TimePeriod and make let PartialUserType suppor...
Andreas Müller [Fri, 11 May 2018 17:40:03 +0000 (19:40 +0200)]
fix #7074 Change Media.mediaCreated to TimePeriod and make let PartialUserType support hour and minute

6 years agoAdapt FullCoverageDataGenerator to model 4.7 updates
Andreas Müller [Fri, 11 May 2018 14:29:18 +0000 (16:29 +0200)]
Adapt FullCoverageDataGenerator to model 4.7 updates

6 years agoref 6588 update script for originalSource.links
Andreas Müller [Fri, 11 May 2018 14:28:36 +0000 (16:28 +0200)]
ref 6588 update script for originalSource.links

6 years agorename model version 4.9 to 5.0
Andreas Müller [Fri, 11 May 2018 14:25:37 +0000 (16:25 +0200)]
rename model version 4.9 to 5.0

6 years agofix ExternalLinkType xmlenumvalue for website
Andreas Müller [Fri, 11 May 2018 14:10:20 +0000 (16:10 +0200)]
fix ExternalLinkType xmlenumvalue for website

6 years agocleanup
Andreas Müller [Fri, 11 May 2018 14:09:45 +0000 (16:09 +0200)]
cleanup

6 years agoref #6588 add externalLink to OriginalSource
Andreas Müller [Fri, 11 May 2018 14:09:18 +0000 (16:09 +0200)]
ref #6588 add externalLink to OriginalSource

6 years agoref #6752 update script for Reference.datepublished_verbatimDate
Andreas Müller [Fri, 11 May 2018 13:52:19 +0000 (15:52 +0200)]
ref #6752 update script for Reference.datepublished_verbatimDate

6 years agoref #7405 javadoc
Andreas Müller [Fri, 11 May 2018 13:42:52 +0000 (15:42 +0200)]
ref #7405 javadoc

6 years agoref #2335 fix rights handling in TableCreator
Andreas Müller [Fri, 11 May 2018 13:42:09 +0000 (15:42 +0200)]
ref #2335 fix rights handling in TableCreator

6 years agofix protectedTitleCache type in ClassBaseTypeUpdater
Andreas Müller [Fri, 11 May 2018 13:40:49 +0000 (15:40 +0200)]
fix protectedTitleCache type in ClassBaseTypeUpdater

6 years agoref #6588 update script for ExternalLink
Andreas Müller [Fri, 11 May 2018 13:40:16 +0000 (15:40 +0200)]
ref #6588 update script for ExternalLink

6 years agoref #7276 revert "make User.email a unique field"
Andreas Müller [Fri, 11 May 2018 12:00:28 +0000 (14:00 +0200)]
ref #7276 revert "make User.email a unique field"

6 years agoRevert "ref #7276 revert "make User.email a unique field""
Andreas Müller [Fri, 11 May 2018 11:57:37 +0000 (13:57 +0200)]
Revert "ref #7276 revert "make User.email a unique field""

This reverts commit 80cbc74164e5b37dbaa8e64d90126e745a9a05e3.

6 years agoref #7276 revert "make User.email a unique field"
Andreas Müller [Fri, 11 May 2018 11:55:41 +0000 (13:55 +0200)]
ref #7276 revert "make User.email a unique field"

6 years agoref #7238 fix datatype for renaming Person.lastname and firstname
Andreas Müller [Fri, 11 May 2018 11:47:47 +0000 (13:47 +0200)]
ref #7238 fix datatype for renaming Person.lastname and firstname

6 years agoref #7405 remove hibernate sequence update as it is already included in table rename
Andreas Müller [Fri, 11 May 2018 11:45:52 +0000 (13:45 +0200)]
ref #7405 remove hibernate sequence update as it is already included in table rename

6 years agoref #7144 fix update script for country levels
Andreas Müller [Fri, 11 May 2018 11:44:23 +0000 (13:44 +0200)]
ref #7144 fix update script for country levels

6 years agoReduce IndexSize for IndexAdder if requried
Andreas Müller [Fri, 11 May 2018 11:41:50 +0000 (13:41 +0200)]
Reduce IndexSize for IndexAdder if requried

6 years agoref #6258 add Registration.blockedBy Adder and Remover
Andreas Müller [Fri, 11 May 2018 09:53:51 +0000 (11:53 +0200)]
ref #6258 add Registration.blockedBy Adder and Remover

6 years agofix #7144 fix update script for setting country area levels
Andreas Müller [Fri, 11 May 2018 09:50:58 +0000 (11:50 +0200)]
fix #7144 fix update script for setting country area levels

6 years agoref #7405 fix update script for renaming WorkingSet/DescriptiveDataSet
Andreas Müller [Fri, 11 May 2018 09:49:54 +0000 (11:49 +0200)]
ref #7405 fix update script for renaming WorkingSet/DescriptiveDataSet

6 years agoref #6879 fix update script for admin user group uuid
Andreas Müller [Fri, 11 May 2018 09:48:20 +0000 (11:48 +0200)]
ref #6879 fix update script for admin user group uuid

6 years agoFix TableCreator for Rights table name
Andreas Müller [Fri, 11 May 2018 09:46:23 +0000 (11:46 +0200)]
Fix TableCreator for Rights table name

6 years agoref #2335 fix preferredRepresentation for DescriptiveDataSet with no representation
Andreas Müller [Fri, 11 May 2018 09:45:39 +0000 (11:45 +0200)]
ref #2335 fix preferredRepresentation for DescriptiveDataSet with no representation

6 years agoref #7405 update httpInvokerServices id for httpDescriptiveDataSetService
Andreas Müller [Wed, 9 May 2018 13:08:06 +0000 (15:08 +0200)]
ref #7405  update httpInvokerServices id for httpDescriptiveDataSetService

6 years agofix #7144 Add area level to countries
Andreas Müller [Wed, 9 May 2018 11:13:29 +0000 (13:13 +0200)]
fix #7144 Add area level to countries

6 years agoref #7144, ref #7405 update test term datasets
Andreas Müller [Wed, 9 May 2018 11:10:09 +0000 (13:10 +0200)]
ref #7144, ref #7405 update test term datasets

6 years agoref #7384 Order SpecimenTypeDesignationStatus according to new order in vocabulary
Andreas Müller [Tue, 8 May 2018 23:25:40 +0000 (01:25 +0200)]
ref #7384 Order SpecimenTypeDesignationStatus according to new order in vocabulary

6 years agoref #6720 fix integer to string in occurrence search
Andreas Müller [Tue, 8 May 2018 22:23:27 +0000 (00:23 +0200)]
ref #6720 fix integer to string in occurrence search

6 years agoref #6752 implement verbatimDate for Reference (Parser and Formatter still missing)
Andreas Müller [Tue, 8 May 2018 16:02:33 +0000 (18:02 +0200)]
ref #6752 implement verbatimDate for Reference (Parser and Formatter still missing)

6 years agofix TimePeriod hashCode
Andreas Müller [Tue, 8 May 2018 16:00:29 +0000 (18:00 +0200)]
fix TimePeriod hashCode

6 years agocleanup
Andreas Müller [Tue, 8 May 2018 15:59:07 +0000 (17:59 +0200)]
cleanup

6 years agoref #6720 make individualCount a string
Andreas Müller [Tue, 8 May 2018 12:54:54 +0000 (14:54 +0200)]
ref #6720 make individualCount a string

6 years agocleanup
Andreas Müller [Tue, 8 May 2018 12:53:46 +0000 (14:53 +0200)]
cleanup

6 years agoref #7096 add symbol2 to xmltype
Andreas Müller [Tue, 8 May 2018 12:13:53 +0000 (14:13 +0200)]
ref #7096 add symbol2 to xmltype

6 years agoref #7238 adapt xmltype for familyName and givenName
Andreas Müller [Tue, 8 May 2018 12:13:18 +0000 (14:13 +0200)]
ref #7238 adapt xmltype for familyName and givenName

6 years agoref #7210 add salt to FirstDataInserterTest test data
Andreas Müller [Tue, 8 May 2018 11:55:30 +0000 (13:55 +0200)]
ref #7210 add salt to FirstDataInserterTest test data

6 years agoref #6699 remove term version from FirstDataInserterTest test data
Andreas Müller [Tue, 8 May 2018 11:54:53 +0000 (13:54 +0200)]
ref #6699 remove term version from FirstDataInserterTest test data

6 years agocleanup
Andreas Müller [Tue, 8 May 2018 11:54:11 +0000 (13:54 +0200)]
cleanup

6 years agoref #6581 preliminary revert some changes for making nomenclaturalReference an Origin...
Andreas Müller [Tue, 8 May 2018 11:46:06 +0000 (13:46 +0200)]
ref #6581 preliminary revert some changes for making nomenclaturalReference an OriginalSource

6 years agoref #2335 adapt test data schema for identifiable DescriptiveDataSet
Andreas Müller [Tue, 8 May 2018 11:34:03 +0000 (13:34 +0200)]
ref #2335 adapt test data schema for identifiable DescriptiveDataSet

6 years agoref #6581 add TaxonName.nomenclaturalSource_id and adapt constructor visibility for...
Andreas Müller [Tue, 8 May 2018 11:24:52 +0000 (13:24 +0200)]
ref #6581 add TaxonName.nomenclaturalSource_id and adapt constructor visibility for DescriptionElementSource

6 years agoref #7238 fix givenname camelCase issue in AgentDaoImplTest
Andreas Müller [Tue, 8 May 2018 10:57:52 +0000 (12:57 +0200)]
ref #7238 fix givenname camelCase issue in AgentDaoImplTest

6 years agoref #7210 fix salt in dataset.dtd
Andreas Müller [Tue, 8 May 2018 10:37:07 +0000 (12:37 +0200)]
ref #7210 fix salt in dataset.dtd