Andreas Kohlbecker [Thu, 11 Jul 2019 16:11:44 +0000 (18:11 +0200)]
ref #8365 removing parentheses from code + accession number
Andreas Kohlbecker [Thu, 11 Jul 2019 16:01:55 +0000 (18:01 +0200)]
ref #8365 stripping collection code from accession number in DerivedUnitFacadeCacheStrategy
Andreas Kohlbecker [Thu, 11 Jul 2019 16:00:56 +0000 (18:00 +0200)]
avoiding NPE
Patrick Plitzner [Thu, 11 Jul 2019 06:09:09 +0000 (08:09 +0200)]
ref #8283 Add media uuids to term dto
- fix HQL response handling for left outer joins
Katja Luther [Fri, 5 Jul 2019 21:04:50 +0000 (23:04 +0200)]
minor in cdm light export
Katja Luther [Fri, 5 Jul 2019 20:14:17 +0000 (22:14 +0200)]
revert condensed distribution string and some performance issues in cdm light
Katja Luther [Fri, 5 Jul 2019 11:23:47 +0000 (13:23 +0200)]
add condensed distribution string to cdm light export
Katja Luther [Fri, 5 Jul 2019 12:06:19 +0000 (14:06 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Fri, 5 Jul 2019 12:05:45 +0000 (14:05 +0200)]
smaller changes in abcd import
Patrick Plitzner [Fri, 5 Jul 2019 09:09:08 +0000 (11:09 +0200)]
ref #8248, #6774 Add top level term evaluation to test
Katja Luther [Fri, 5 Jul 2019 07:13:42 +0000 (09:13 +0200)]
fix dummy line in cdmlight export simple facts table
Andreas Kohlbecker [Thu, 4 Jul 2019 22:24:55 +0000 (00:24 +0200)]
addinional RegistrationService test and a bit of cleaning up
Andreas Kohlbecker [Thu, 4 Jul 2019 20:38:21 +0000 (22:38 +0200)]
ref #8352 controller and service to find registrations by name
Andreas Kohlbecker [Thu, 4 Jul 2019 19:50:22 +0000 (21:50 +0200)]
ref #8354 implenting registration serch by taxonUUIDs which also covers typedesignations
Andreas Kohlbecker [Thu, 4 Jul 2019 18:39:15 +0000 (20:39 +0200)]
RestrictionConverter converts uuid strings to UUID objetcs which have beed passed as json value
Andreas Kohlbecker [Thu, 4 Jul 2019 17:08:26 +0000 (19:08 +0200)]
cleaning up controller code
Patrick Plitzner [Thu, 4 Jul 2019 15:40:10 +0000 (17:40 +0200)]
ref #8248, #6774 Adapt tests
Patrick Plitzner [Thu, 4 Jul 2019 15:39:56 +0000 (17:39 +0200)]
ref #6774 Export reference uuid
Patrick Plitzner [Thu, 4 Jul 2019 12:18:30 +0000 (14:18 +0200)]
ref #8248 Check for existing media and references
Patrick Plitzner [Thu, 4 Jul 2019 11:29:31 +0000 (13:29 +0200)]
ref #8248, #6774 Fix order of term import
- add top level term property to import/export
Patrick Plitzner [Wed, 3 Jul 2019 13:44:22 +0000 (15:44 +0200)]
ref #8248 Fix possible NPE
Patrick Plitzner [Wed, 3 Jul 2019 13:44:04 +0000 (15:44 +0200)]
ref #6774 Move recursive model export to util class
Andreas Kohlbecker [Thu, 4 Jul 2019 11:27:25 +0000 (13:27 +0200)]
adding AnnotationType to getEmptyDefinedTermBase()
Katja Luther [Wed, 3 Jul 2019 10:48:04 +0000 (12:48 +0200)]
code cleaning
Andreas Kohlbecker [Tue, 2 Jul 2019 14:51:53 +0000 (16:51 +0200)]
using CleanSweepInsertLoadStrategy in SecurityTest
Andreas Kohlbecker [Tue, 2 Jul 2019 14:42:15 +0000 (16:42 +0200)]
adding missing REGISTRATION* tables to the ClearDBDataSet.xml
Andreas Kohlbecker [Tue, 2 Jul 2019 14:17:36 +0000 (16:17 +0200)]
using CleanSweepInsertLoadStrategy in DerivedUnitConverterIntegrationTest
Andreas Kohlbecker [Tue, 2 Jul 2019 13:10:44 +0000 (15:10 +0200)]
fix #8287 implementing support for null type status as filter value in Registration service
Andreas Kohlbecker [Tue, 2 Jul 2019 12:31:33 +0000 (14:31 +0200)]
Revert "adding missing MatchMode in createRestriction()"
This reverts commit
1eca13fafa584494a9300c1a6844d435ca5ae897.
Patrick Plitzner [Tue, 2 Jul 2019 12:06:59 +0000 (14:06 +0200)]
ref #8248 Add character to export (partially)
Andreas Kohlbecker [Tue, 2 Jul 2019 11:37:18 +0000 (13:37 +0200)]
ignoring RedmineRegistrationMessageServiceTest since RedmineRegistrationMessageService is going to be removed
Andreas Kohlbecker [Tue, 2 Jul 2019 11:33:58 +0000 (13:33 +0200)]
adding missing MatchMode in createRestriction()
Katja Luther [Tue, 2 Jul 2019 08:41:23 +0000 (10:41 +0200)]
fix failing test (add anywher to createRestrictions)
Andreas Kohlbecker [Mon, 1 Jul 2019 16:52:32 +0000 (18:52 +0200)]
ref #8330 removing unused and obsolete service methods which are replaces by the new one
Andreas Kohlbecker [Mon, 1 Jul 2019 16:34:48 +0000 (18:34 +0200)]
ref #7620 rest service /registrationDTO/find with filter string for references
Andreas Kohlbecker [Mon, 1 Jul 2019 16:32:58 +0000 (18:32 +0200)]
ref #7620 filtered registration search implemented with filter string for references
Andreas Kohlbecker [Mon, 1 Jul 2019 15:07:25 +0000 (17:07 +0200)]
ref #8330 ref #7885 removing confusing typo in test data
Andreas Kohlbecker [Mon, 1 Jul 2019 14:31:43 +0000 (16:31 +0200)]
ref #7885 tests for registration search by typified name and implementing order by
Andreas Kohlbecker [Mon, 1 Jul 2019 13:28:00 +0000 (15:28 +0200)]
ref #8330 dao method for filtered registration search implemented: reprocduces existing functionality plus extended name search ref #7885
Andreas Kohlbecker [Sun, 30 Jun 2019 15:35:37 +0000 (17:35 +0200)]
ref #8330 completing documentation regarding wildcards and fixing bug with MatchMode LIKE when using Restrictions
Andreas Kohlbecker [Sun, 30 Jun 2019 14:22:42 +0000 (16:22 +0200)]
ref #8330 documentation for RegistrationService.page and RegistrationWorkingsetService.pageDTO
Andreas Kohlbecker [Sun, 30 Jun 2019 14:10:09 +0000 (16:10 +0200)]
ref #8330 implementing tests for RegsitrationService.page and RegistrationWorkingsetService.pageDTO
Katja Luther [Mon, 1 Jul 2019 11:43:14 +0000 (13:43 +0200)]
ref #8344: add dummy line in empty simple facts table
Andreas Kohlbecker [Thu, 27 Jun 2019 12:25:53 +0000 (14:25 +0200)]
ref #7296 removing all config files related to the RemineMessagingService since this has been dropped completely
Andreas Kohlbecker [Thu, 6 Jun 2019 11:08:44 +0000 (13:08 +0200)]
ref #8321 cleaning up cotroller code
Katja Luther [Thu, 27 Jun 2019 12:11:38 +0000 (14:11 +0200)]
smaller changes in ABCD import - continue
Katja Luther [Thu, 27 Jun 2019 12:10:29 +0000 (14:10 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Thu, 27 Jun 2019 12:09:49 +0000 (14:09 +0200)]
smaller changes in ABCD import
Katja Luther [Thu, 27 Jun 2019 07:08:24 +0000 (09:08 +0200)]
ref #8182: minor
Katja Luther [Wed, 26 Jun 2019 12:13:32 +0000 (14:13 +0200)]
ref #8182: accession number is required in webservice
Katja Luther [Wed, 26 Jun 2019 11:56:23 +0000 (13:56 +0200)]
ref #8182: add header to failed response
Katja Luther [Wed, 26 Jun 2019 08:05:09 +0000 (10:05 +0200)]
ref #8182: handle not existing dna for accession number
Katja Luther [Tue, 25 Jun 2019 12:33:46 +0000 (14:33 +0200)]
cdmlight: change area category to the area level
Patrick Plitzner [Tue, 25 Jun 2019 11:39:37 +0000 (13:39 +0200)]
ref #8248 Add feature to export (partially)
Patrick Plitzner [Tue, 25 Jun 2019 08:24:43 +0000 (10:24 +0200)]
ref #8248, #6774 Add character to export
- adapt test
Patrick Plitzner [Fri, 21 Jun 2019 15:59:05 +0000 (17:59 +0200)]
ref #8248, #6774 Add sources to import/export
Patrick Plitzner [Fri, 21 Jun 2019 12:18:35 +0000 (14:18 +0200)]
ref #8248, #6774 Improve import/export performance
Patrick Plitzner [Wed, 19 Jun 2019 15:04:01 +0000 (17:04 +0200)]
ref #8335 Add character matrix table state DB preference
Andreas Müller [Mon, 17 Jun 2019 10:08:02 +0000 (12:08 +0200)]
add hybrid name save to import base class
Andreas Müller [Mon, 17 Jun 2019 10:07:19 +0000 (12:07 +0200)]
add E+M rank uuids to rank class
Katja Luther [Mon, 17 Jun 2019 09:48:07 +0000 (11:48 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Mon, 17 Jun 2019 09:47:40 +0000 (11:47 +0200)]
set dnaSource to null in test
Patrick Plitzner [Mon, 17 Jun 2019 09:47:13 +0000 (11:47 +0200)]
ref #8248, #6774 Add progress monitor to import/export
Katja Luther [Mon, 17 Jun 2019 07:57:31 +0000 (09:57 +0200)]
smaller changes in abcd import and cdm light export
Patrick Plitzner [Mon, 17 Jun 2019 08:35:24 +0000 (10:35 +0200)]
ref #6774 Add progress monitor to owl export
Patrick Plitzner [Fri, 14 Jun 2019 11:51:36 +0000 (13:51 +0200)]
ref #8248, #6774 Add media to import/export
Patrick Plitzner [Fri, 14 Jun 2019 09:58:35 +0000 (11:58 +0200)]
ref #8248 Only add term to vocabulary if term is newly created
Patrick Plitzner [Fri, 14 Jun 2019 09:53:59 +0000 (11:53 +0200)]
ref #8248 Only add term to vocabulary if term is newly created
Patrick Plitzner [Thu, 13 Jun 2019 11:15:30 +0000 (13:15 +0200)]
ref #8248, #6774 Add plural to import/export
- add test for plural and abbrevLabel
Patrick Plitzner [Thu, 13 Jun 2019 07:48:24 +0000 (09:48 +0200)]
ref #8248, #6774 Add symbol, symbol2 and idInVocabulary to import/export
- change rdf identifier to lowercase
Andreas Müller [Wed, 5 Jun 2019 11:17:03 +0000 (13:17 +0200)]
fix #8257 remove remaining deprecated FeatureNode.NewInstance method
Katja Luther [Wed, 5 Jun 2019 07:34:09 +0000 (09:34 +0200)]
overwrite equals for taxonnodeDto
Katja Luther [Tue, 4 Jun 2019 20:21:01 +0000 (22:21 +0200)]
ref #8047: configurable display of status in drop down, new enum and predicate
Andreas Kohlbecker [Tue, 4 Jun 2019 10:39:13 +0000 (12:39 +0200)]
ref #8321 implementing page by restriction method to allow for flexible web service queries, also protecting unpublished taxa and names ref #3560
Andreas Müller [Tue, 4 Jun 2019 08:14:11 +0000 (10:14 +0200)]
add rollback check in ExcelImportBase
Andreas Müller [Tue, 4 Jun 2019 08:10:49 +0000 (10:10 +0200)]
fix compilation error in BaseListController
Katja Luther [Tue, 4 Jun 2019 06:58:09 +0000 (08:58 +0200)]
fix test as cdm light creates all tables now
Andreas Kohlbecker [Mon, 3 Jun 2019 15:25:17 +0000 (17:25 +0200)]
generic webservice method for all cdm entitiy list controllers to search by Restriction
Katja Luther [Mon, 3 Jun 2019 11:01:18 +0000 (13:01 +0200)]
ref #8322: adapt TaxonNodeDtoComparator to compare the names by taggedTitle
Andreas Kohlbecker [Fri, 31 May 2019 07:22:48 +0000 (09:22 +0200)]
ref #5857, ref #8319 adding TypedEntityRefernces to nom status TaggedText and fixing json serialization for EntitiyReferences in taxon.taggedTitle processing
Andreas Kohlbecker [Fri, 31 May 2019 07:15:52 +0000 (09:15 +0200)]
fix #8319 NomenclaturalStatus webservice and according service methods implemented
Andreas Kohlbecker [Wed, 29 May 2019 17:47:56 +0000 (19:47 +0200)]
fix #8314 implementing taxonname.taggedFullTitle for model class and in web service controller
Katja Luther [Wed, 29 May 2019 11:04:08 +0000 (13:04 +0200)]
ref #8273: check for DNA data for provided biocase provider
Katja Luther [Wed, 29 May 2019 11:00:33 +0000 (13:00 +0200)]
minor
Katja Luther [Wed, 29 May 2019 10:59:54 +0000 (12:59 +0200)]
ref #8182: adapt occurrence DTOs to use them in details page of blast result
Katja Luther [Wed, 29 May 2019 10:52:08 +0000 (12:52 +0200)]
ref #8045: add toString() to the preference enums
Patrick Plitzner [Wed, 29 May 2019 09:51:00 +0000 (11:51 +0200)]
ref #8248 Add term vocbulary import test + code cleanup
Patrick Plitzner [Wed, 29 May 2019 08:37:55 +0000 (10:37 +0200)]
ref #8248 Fix property string access
Patrick Plitzner [Wed, 29 May 2019 07:41:35 +0000 (09:41 +0200)]
ref #6774 Init export configurator
Patrick Plitzner [Tue, 28 May 2019 15:51:08 +0000 (17:51 +0200)]
ref #8248 Adapt test to import
Patrick Plitzner [Tue, 28 May 2019 15:50:35 +0000 (17:50 +0200)]
ref #8248 Set UUID during import
Patrick Plitzner [Tue, 28 May 2019 13:02:24 +0000 (15:02 +0200)]
ref #6774 Adapt test to export format
Katja Luther [Mon, 27 May 2019 12:56:04 +0000 (14:56 +0200)]
fix tests for cdmlight
Katja Luther [Mon, 27 May 2019 12:13:39 +0000 (14:13 +0200)]
fix preference service
Patrick Plitzner [Mon, 27 May 2019 12:00:43 +0000 (14:00 +0200)]
ref #8248, #6774 Fix bean names
Katja Luther [Mon, 27 May 2019 10:48:41 +0000 (12:48 +0200)]
ref #8045: add remove to preference service and dao
Patrick Plitzner [Mon, 27 May 2019 07:58:17 +0000 (09:58 +0200)]
ref #8248 Implement termvocabulary import
Patrick Plitzner [Mon, 27 May 2019 07:39:17 +0000 (09:39 +0200)]
ref #6774 Set vocabulary for partOf and kindOf terms in export
Patrick Plitzner [Mon, 27 May 2019 07:15:33 +0000 (09:15 +0200)]
ref #6774 Fix node hierarchy in export
Patrick Plitzner [Mon, 27 May 2019 07:11:06 +0000 (09:11 +0200)]
ref #8248 Extract CDM entity creation to util