Cherian Mathew [Fri, 15 Jun 2012 10:13:29 +0000 (10:13 +0000)]
removed @Override since it is incompatible with Java 7
Cherian Mathew [Fri, 15 Jun 2012 09:46:22 +0000 (09:46 +0000)]
add 1 method to be compliant with Java 7
Cherian Mathew [Fri, 15 Jun 2012 09:41:46 +0000 (09:41 +0000)]
Corrected mistake in END wildcard option
Katja Luther [Fri, 15 Jun 2012 09:40:00 +0000 (09:40 +0000)]
bugfixes in security interceptor
Katja Luther [Fri, 15 Jun 2012 09:39:09 +0000 (09:39 +0000)]
add the cascading from TaxonDescription to its taxon again
Katja Luther [Fri, 15 Jun 2012 09:37:46 +0000 (09:37 +0000)]
Cherian Mathew [Fri, 15 Jun 2012 09:30:05 +0000 (09:30 +0000)]
add 2 methods to ResultSetProxy to be compliant with Java 7
Andreas Kohlbecker [Thu, 14 Jun 2012 11:44:45 +0000 (11:44 +0000)]
adding debug logging
Andreas Müller [Thu, 14 Jun 2012 11:15:40 +0000 (11:15 +0000)]
make update title cache writable
Andreas Müller [Thu, 14 Jun 2012 11:12:54 +0000 (11:12 +0000)]
make update title cache writable
Andreas Müller [Thu, 14 Jun 2012 10:10:24 +0000 (10:10 +0000)]
minor doc
Andreas Müller [Thu, 14 Jun 2012 09:46:19 +0000 (09:46 +0000)]
minor
Andreas Müller [Wed, 13 Jun 2012 15:04:21 +0000 (15:04 +0000)]
useSourceRefAsSec for Dwc-A in
Andreas Müller [Wed, 13 Jun 2012 15:03:32 +0000 (15:03 +0000)]
refactor markup import, separate classes
Katja Luther [Wed, 13 Jun 2012 14:23:43 +0000 (14:23 +0000)]
rechanged the pom
Katja Luther [Wed, 13 Jun 2012 13:51:49 +0000 (13:51 +0000)]
Andreas Müller [Tue, 12 Jun 2012 15:06:19 +0000 (15:06 +0000)]
fix for NPE in TaxonNodeByNameComparator, #2912
Andreas Müller [Mon, 11 Jun 2012 09:54:30 +0000 (09:54 +0000)]
make source reference title configurable
Andreas Müller [Mon, 11 Jun 2012 08:53:04 +0000 (08:53 +0000)]
fixing NPE in Dwc-A import
Andreas Müller [Mon, 11 Jun 2012 08:44:03 +0000 (08:44 +0000)]
minor debugging
Andreas Kohlbecker [Mon, 11 Jun 2012 07:51:33 +0000 (07:51 +0000)]
changing server ip to server name in pom
Andreas Müller [Fri, 8 Jun 2012 11:31:28 +0000 (11:31 +0000)]
minor
Andreas Müller [Thu, 7 Jun 2012 17:11:46 +0000 (17:11 +0000)]
bugfix for wrong http anchor replacement
Andreas Kohlbecker [Thu, 7 Jun 2012 14:11:39 +0000 (14:11 +0000)]
fixing minor bug
Andreas Kohlbecker [Thu, 7 Jun 2012 13:54:09 +0000 (13:54 +0000)]
fixing test data
Andreas Müller [Thu, 7 Jun 2012 10:14:01 +0000 (10:14 +0000)]
remove commented code
Andreas Müller [Thu, 7 Jun 2012 10:08:54 +0000 (10:08 +0000)]
minor
Andreas Kohlbecker [Thu, 7 Jun 2012 09:59:34 +0000 (09:59 +0000)]
findByDescriptionElementFullText implemented an hibernate search related tests fixed
Andreas Müller [Thu, 7 Jun 2012 09:30:50 +0000 (09:30 +0000)]
ObjectChange mapper depending on input class
Andreas Müller [Thu, 7 Jun 2012 09:29:43 +0000 (09:29 +0000)]
add additional features for EM to BM import
Andreas Müller [Thu, 7 Jun 2012 09:20:10 +0000 (09:20 +0000)]
bugfix for features with missing uuid in BM import
Andreas Müller [Wed, 6 Jun 2012 13:24:55 +0000 (13:24 +0000)]
fixed uuid for E+M maps feature
Katja Luther [Wed, 6 Jun 2012 11:30:37 +0000 (11:30 +0000)]
SecurityInterceptor added
Andreas Müller [Wed, 6 Jun 2012 11:20:52 +0000 (11:20 +0000)]
handle links to maps as facts in BM correctly during export to CDM
Katja Luther [Wed, 6 Jun 2012 11:16:42 +0000 (11:16 +0000)]
Adding PermissionEvaluator and helper classes
Andreas Müller [Mon, 4 Jun 2012 13:36:51 +0000 (13:36 +0000)]
bugfix for missing facts in BM import and refactoring in BM facts import
Andreas Müller [Fri, 1 Jun 2012 16:00:36 +0000 (16:00 +0000)]
implement sublusus and some remaining issues from taxon status change for PESI export
Andreas Müller [Fri, 1 Jun 2012 12:32:33 +0000 (12:32 +0000)]
bugfix for problems with emCommonName import unmatched areas
Andreas Müller [Fri, 1 Jun 2012 11:43:23 +0000 (11:43 +0000)]
implement alternative rank labels for BM, #2811
Andreas Müller [Fri, 1 Jun 2012 11:24:05 +0000 (11:24 +0000)]
make some uuids public
Andreas Müller [Wed, 30 May 2012 13:24:25 +0000 (13:24 +0000)]
fix tests for PolytomousKeyNodes, #2892
Andreas Müller [Wed, 30 May 2012 12:16:33 +0000 (12:16 +0000)]
bugfix for PolytomousKeyNode numbering, #2892
Andreas Müller [Wed, 30 May 2012 11:46:47 +0000 (11:46 +0000)]
update Markup import for F. Guianas
Andreas Müller [Fri, 25 May 2012 16:47:24 +0000 (16:47 +0000)]
minor
Katja Luther [Thu, 24 May 2012 11:18:40 +0000 (11:18 +0000)]
the exception because of the missing profiling agent is not propagated, only a logger message will be written
Andreas Müller [Thu, 24 May 2012 11:13:51 +0000 (11:13 +0000)]
bugfix for autonym authorship #2888
Andreas Müller [Thu, 24 May 2012 11:10:15 +0000 (11:10 +0000)]
bugfix for autonym authorship #2888
Andreas Müller [Wed, 23 May 2012 16:43:28 +0000 (16:43 +0000)]
Correct handling for multiple author teams (replace & by , )
l.morris [Wed, 23 May 2012 15:35:38 +0000 (15:35 +0000)]
Added property to associate the vibrant-name.xsl and vibrant-taxon.xsl to the name/taxon service so that the appropriate XSLT is applied to XML in the web browser.
Andreas Müller [Tue, 22 May 2012 15:52:52 +0000 (15:52 +0000)]
fix misspelling for warning
Andreas Müller [Tue, 22 May 2012 15:28:54 +0000 (15:28 +0000)]
latest updates to markup import for FdG
l.morris [Tue, 22 May 2012 13:26:30 +0000 (13:26 +0000)]
Added citation for homotypic synonyms. Modified citation to include only author surnames, rather than synonyms in the PDF print output.
Andreas Müller [Tue, 22 May 2012 11:54:24 +0000 (11:54 +0000)]
bugfix for protected name title caches in BM import
Andreas Müller [Tue, 22 May 2012 10:56:36 +0000 (10:56 +0000)]
minor
Andreas Müller [Mon, 21 May 2012 16:45:22 +0000 (16:45 +0000)]
remove deprecated method
Andreas Müller [Mon, 21 May 2012 14:40:06 +0000 (14:40 +0000)]
debugging for precision
edit-jenkins [Tue, 8 May 2012 10:02:32 +0000 (10:02 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Tue, 8 May 2012 10:02:30 +0000 (10:02 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.0.10
Andreas Kohlbecker [Mon, 7 May 2012 15:48:53 +0000 (15:48 +0000)]
fixing #2879 (Error when using the remote webservice function find NamebyNames)
Andreas Kohlbecker [Mon, 7 May 2012 12:38:20 +0000 (12:38 +0000)]
merging branches/cdmlib/Kew_Palm_Use_Data_Extension into trunk & cleaning up a bit
a.theys [Mon, 7 May 2012 11:09:25 +0000 (11:09 +0000)]
AT: Change to harmonize the Remote controllers
Andreas Kohlbecker [Mon, 7 May 2012 09:55:26 +0000 (09:55 +0000)]
marking methods for harmonization
Andreas Kohlbecker [Mon, 7 May 2012 09:44:21 +0000 (09:44 +0000)]
marking methods for harmonization
a.theys [Mon, 7 May 2012 08:44:59 +0000 (08:44 +0000)]
AT: Change to harmonize the Remote controllers
a.theys [Fri, 4 May 2012 17:33:20 +0000 (17:33 +0000)]
AT: Edited file to remove duplicated call to render
a.theys [Fri, 4 May 2012 17:18:17 +0000 (17:18 +0000)]
AT: committing CDMLIB to Branch post Merge
a.theys [Fri, 4 May 2012 16:57:46 +0000 (16:57 +0000)]
AT: committing latest changes to the CDMLib prior to merging
a.theys [Mon, 30 Apr 2012 16:13:39 +0000 (16:13 +0000)]
AT: committing latest changes to the CDMLib to try and fix issues with the function findByTitle
a.theys [Thu, 26 Apr 2012 16:22:32 +0000 (16:22 +0000)]
AT: change to fix a lazy initialization problem
Cherian Mathew [Thu, 26 Apr 2012 11:11:10 +0000 (11:11 +0000)]
Removed console outputs and added check for NameInformation response to add taxon lsids only in the case of accepted taxa
a.theys [Thu, 26 Apr 2012 10:06:45 +0000 (10:06 +0000)]
AT: change of method name and service path
a.theys [Wed, 25 Apr 2012 16:27:59 +0000 (16:27 +0000)]
AT: committing latest changes to the CDMLib to work from home and fix some outstanding issues
a.theys [Wed, 25 Apr 2012 12:03:02 +0000 (12:03 +0000)]
AT: committing latest changes to cdmlib to implement remote methods required by the dataportal.
Cherian Mathew [Tue, 24 Apr 2012 14:11:00 +0000 (14:11 +0000)]
Controller class which contains entry points for Name Search, Name Information and Taxon Information
Cherian Mathew [Tue, 24 Apr 2012 14:09:39 +0000 (14:09 +0000)]
Changed 'getRelatedFrom()' and 'getRelatedTo' from protected to public for controller access
Cherian Mathew [Tue, 24 Apr 2012 14:06:55 +0000 (14:06 +0000)]
updated import of RemoteResponse and ErrorResponse classes
Cherian Mathew [Tue, 24 Apr 2012 14:06:28 +0000 (14:06 +0000)]
RemoteResponse : Root interface for response model enities. This makes it possible to return a list of different objects (all implementing RemoteResponse)
ErrorResponse : Basic mode entity class which contains an error message
Cherian Mathew [Tue, 24 Apr 2012 13:59:14 +0000 (13:59 +0000)]
New package which contains dtos for name_catalogue queries
- NameSearch for basic name search using string pattern
- NameInformation for name search based on name uuids
- TaxonInformation for taxon search based on taxon uuids
Cherian Mathew [Tue, 24 Apr 2012 13:56:51 +0000 (13:56 +0000)]
Added json configuration for name_catalogue called 'nameCatalogueJsonConfig'
Cherian Mathew [Tue, 24 Apr 2012 13:55:57 +0000 (13:55 +0000)]
Implementations of functions which,
- find taxon names by title/uuid
- find taxons by uuid
Cherian Mathew [Tue, 24 Apr 2012 13:46:58 +0000 (13:46 +0000)]
Added 'findTaxonByUuid' for name_catalogue functionality
Cherian Mathew [Tue, 24 Apr 2012 13:45:58 +0000 (13:45 +0000)]
Added 'findNamesByTitleCache' and 'findNameByUuid' for name_catalogue functionality
Cherian Mathew [Tue, 24 Apr 2012 13:31:37 +0000 (13:31 +0000)]
Added views for namespace 'name_catalogue'
a.theys [Mon, 23 Apr 2012 13:15:04 +0000 (13:15 +0000)]
AT: committing latest changes to the CDMLib during first round of Code review
a.theys [Mon, 23 Apr 2012 09:05:28 +0000 (09:05 +0000)]
AT: committing latest changes to the CDMLib (to be used by TaxonCache Strategy) during first round of Code review
a.theys [Mon, 23 Apr 2012 08:32:04 +0000 (08:32 +0000)]
AT: committing latest changes to the CDMLib during first round of Code review
a.theys [Mon, 23 Apr 2012 07:50:40 +0000 (07:50 +0000)]
AT: committing latest changes to cdmlib to fix an issue with mediaTitle
Andreas Kohlbecker [Mon, 16 Apr 2012 12:56:23 +0000 (12:56 +0000)]
fixing localhost issue
Andreas Kohlbecker [Mon, 16 Apr 2012 12:53:23 +0000 (12:53 +0000)]
deleting obsolte file
Andreas Kohlbecker [Mon, 16 Apr 2012 12:47:37 +0000 (12:47 +0000)]
fixing NPE
a.theys [Fri, 13 Apr 2012 15:05:01 +0000 (15:05 +0000)]
AT: committing Palm extension changes to the CDM Libraries
Andreas Müller [Fri, 13 Apr 2012 14:05:52 +0000 (14:05 +0000)]
bugfix for TextDataCreation Mapper (mismatch namespace and dbAttribute
Andreas Müller [Fri, 13 Apr 2012 10:48:51 +0000 (10:48 +0000)]
add supplement types to according mappers
Andreas Müller [Thu, 12 Apr 2012 14:42:58 +0000 (14:42 +0000)]
include user defined TaxonRelationship types
Andreas Müller [Thu, 12 Apr 2012 12:16:49 +0000 (12:16 +0000)]
slightly better handling of precision
Andreas Müller [Thu, 12 Apr 2012 08:08:35 +0000 (08:08 +0000)]
changed BacterialName warning to info
l.morris [Wed, 11 Apr 2012 17:24:55 +0000 (17:24 +0000)]
minor
Andreas Müller [Wed, 11 Apr 2012 16:55:29 +0000 (16:55 +0000)]
remove imports, change return value and some generics
Andreas Müller [Wed, 11 Apr 2012 16:54:05 +0000 (16:54 +0000)]
change MultiLanguageTextMapper to works with TextData.put.Use only 1 language.
Andreas Müller [Wed, 11 Apr 2012 16:52:39 +0000 (16:52 +0000)]
add putter method to ImportHelper