cdmlib.git
6 years agoref #7109 update test data for nom. val. and in parser
Andreas Müller [Mon, 14 May 2018 11:47:38 +0000 (13:47 +0200)]
ref #7109 update test data for nom. val. and in parser

6 years agoadd service for creation of synonyms (fixing saving of hybrids)
Katja Luther [Mon, 14 May 2018 11:06:53 +0000 (13:06 +0200)]
add service for creation of synonyms (fixing saving of hybrids)

6 years agoworkaround for very strange max(id) behavior in remote-webapp H2 test database
Andreas Müller [Mon, 14 May 2018 08:31:03 +0000 (10:31 +0200)]
workaround for very strange max(id) behavior in remote-webapp H2 test database

6 years agocleanup
Andreas Müller [Mon, 14 May 2018 08:29:48 +0000 (10:29 +0200)]
cleanup

6 years agoupdate CDM model cache (cdm.map.ser) to 5.0
Andreas Müller [Mon, 14 May 2018 08:29:11 +0000 (10:29 +0200)]
update CDM model cache (cdm.map.ser) to 5.0

6 years agoupdate H2 Test DB in remote webapp
Andreas Müller [Sat, 12 May 2018 10:39:37 +0000 (12:39 +0200)]
update H2 Test DB in remote webapp

6 years agoref #6588 adapt fix test schema
Andreas Müller [Sat, 12 May 2018 03:05:54 +0000 (05:05 +0200)]
ref #6588 adapt fix test schema

6 years agoref #6588 adapt test schema to originalsource.links and externallink.linktype
Andreas Müller [Sat, 12 May 2018 02:36:11 +0000 (04:36 +0200)]
ref #6588 adapt test schema to originalsource.links and externallink.linktype

6 years agoref #6588 fix OriginalSourceBase.clone
Andreas Müller [Sat, 12 May 2018 02:16:03 +0000 (04:16 +0200)]
ref #6588 fix OriginalSourceBase.clone

6 years agoref #7074 fix tests failing due to stricter format checking in Partial UserType
Andreas Müller [Sat, 12 May 2018 02:05:33 +0000 (04:05 +0200)]
ref #7074 fix tests failing due to stricter format checking in Partial UserType

6 years agoref #6588 add jaxb mapping to ExternalLink related
Andreas Müller [Sat, 12 May 2018 01:45:32 +0000 (03:45 +0200)]
ref #6588 add jaxb mapping to ExternalLink related

6 years agorevert SetSubtreePartitioner
Andreas Müller [Sat, 12 May 2018 01:40:32 +0000 (03:40 +0200)]
revert SetSubtreePartitioner

6 years agopartly revert TestModelUpdate changes
Andreas Müller [Sat, 12 May 2018 01:38:52 +0000 (03:38 +0200)]
partly revert TestModelUpdate changes

6 years agoref #7074 fix mediaCreated test data schema
Andreas Müller [Sat, 12 May 2018 01:32:54 +0000 (03:32 +0200)]
ref #7074 fix mediaCreated test data schema

6 years agoref #2335 fix table name for rights MN
Andreas Müller [Sat, 12 May 2018 01:05:03 +0000 (03:05 +0200)]
ref #2335 fix table name for rights MN

6 years agoref #6361 try to fix LSIDAuthority_namespaces for TaxonName
Andreas Müller [Sat, 12 May 2018 00:49:24 +0000 (02:49 +0200)]
ref #6361 try to fix LSIDAuthority_namespaces for TaxonName

6 years agominor
Andreas Müller [Sat, 12 May 2018 00:06:29 +0000 (02:06 +0200)]
minor

6 years agoadd TermRepresentationAdder (not needed yet, untested) implemented for #7334
Andreas Müller [Sat, 12 May 2018 00:04:31 +0000 (02:04 +0200)]
add TermRepresentationAdder (not needed yet, untested) implemented for #7334

6 years agofix #7334 update script for pro parte synonyms to concept relationships
Andreas Müller [Sat, 12 May 2018 00:03:20 +0000 (02:03 +0200)]
fix #7334 update script for pro parte synonyms to concept relationships

6 years agocleanup
Andreas Müller [Sat, 12 May 2018 00:01:02 +0000 (02:01 +0200)]
cleanup

6 years agofix empty values in csvLine reading
Andreas Müller [Fri, 11 May 2018 23:58:42 +0000 (01:58 +0200)]
fix empty values in csvLine reading

6 years agofix #7074 Change Media.mediaCreated to TimePeriod and make let PartialUserType suppor...
Andreas Müller [Fri, 11 May 2018 17:40:03 +0000 (19:40 +0200)]
fix #7074 Change Media.mediaCreated to TimePeriod and make let PartialUserType support hour and minute

6 years agoAdapt FullCoverageDataGenerator to model 4.7 updates
Andreas Müller [Fri, 11 May 2018 14:29:18 +0000 (16:29 +0200)]
Adapt FullCoverageDataGenerator to model 4.7 updates

6 years agoref 6588 update script for originalSource.links
Andreas Müller [Fri, 11 May 2018 14:28:36 +0000 (16:28 +0200)]
ref 6588 update script for originalSource.links

6 years agorename model version 4.9 to 5.0
Andreas Müller [Fri, 11 May 2018 14:25:37 +0000 (16:25 +0200)]
rename model version 4.9 to 5.0

6 years agofix ExternalLinkType xmlenumvalue for website
Andreas Müller [Fri, 11 May 2018 14:10:20 +0000 (16:10 +0200)]
fix ExternalLinkType xmlenumvalue for website

6 years agocleanup
Andreas Müller [Fri, 11 May 2018 14:09:45 +0000 (16:09 +0200)]
cleanup

6 years agoref #6588 add externalLink to OriginalSource
Andreas Müller [Fri, 11 May 2018 14:09:18 +0000 (16:09 +0200)]
ref #6588 add externalLink to OriginalSource

6 years agoref #6752 update script for Reference.datepublished_verbatimDate
Andreas Müller [Fri, 11 May 2018 13:52:19 +0000 (15:52 +0200)]
ref #6752 update script for Reference.datepublished_verbatimDate

6 years agoref #7405 javadoc
Andreas Müller [Fri, 11 May 2018 13:42:52 +0000 (15:42 +0200)]
ref #7405 javadoc

6 years agoref #2335 fix rights handling in TableCreator
Andreas Müller [Fri, 11 May 2018 13:42:09 +0000 (15:42 +0200)]
ref #2335 fix rights handling in TableCreator

6 years agofix protectedTitleCache type in ClassBaseTypeUpdater
Andreas Müller [Fri, 11 May 2018 13:40:49 +0000 (15:40 +0200)]
fix protectedTitleCache type in ClassBaseTypeUpdater

6 years agoref #6588 update script for ExternalLink
Andreas Müller [Fri, 11 May 2018 13:40:16 +0000 (15:40 +0200)]
ref #6588 update script for ExternalLink

6 years agoref #7276 revert "make User.email a unique field"
Andreas Müller [Fri, 11 May 2018 12:00:28 +0000 (14:00 +0200)]
ref #7276 revert "make User.email a unique field"

6 years agoRevert "ref #7276 revert "make User.email a unique field""
Andreas Müller [Fri, 11 May 2018 11:57:37 +0000 (13:57 +0200)]
Revert "ref #7276 revert "make User.email a unique field""

This reverts commit 80cbc74164e5b37dbaa8e64d90126e745a9a05e3.

6 years agoref #7276 revert "make User.email a unique field"
Andreas Müller [Fri, 11 May 2018 11:55:41 +0000 (13:55 +0200)]
ref #7276 revert "make User.email a unique field"

6 years agoref #7238 fix datatype for renaming Person.lastname and firstname
Andreas Müller [Fri, 11 May 2018 11:47:47 +0000 (13:47 +0200)]
ref #7238 fix datatype for renaming Person.lastname and firstname

6 years agoref #7405 remove hibernate sequence update as it is already included in table rename
Andreas Müller [Fri, 11 May 2018 11:45:52 +0000 (13:45 +0200)]
ref #7405 remove hibernate sequence update as it is already included in table rename

6 years agoref #7144 fix update script for country levels
Andreas Müller [Fri, 11 May 2018 11:44:23 +0000 (13:44 +0200)]
ref #7144 fix update script for country levels

6 years agoReduce IndexSize for IndexAdder if requried
Andreas Müller [Fri, 11 May 2018 11:41:50 +0000 (13:41 +0200)]
Reduce IndexSize for IndexAdder if requried

6 years agoref #6258 add Registration.blockedBy Adder and Remover
Andreas Müller [Fri, 11 May 2018 09:53:51 +0000 (11:53 +0200)]
ref #6258 add Registration.blockedBy Adder and Remover

6 years agofix #7144 fix update script for setting country area levels
Andreas Müller [Fri, 11 May 2018 09:50:58 +0000 (11:50 +0200)]
fix #7144 fix update script for setting country area levels

6 years agoref #7405 fix update script for renaming WorkingSet/DescriptiveDataSet
Andreas Müller [Fri, 11 May 2018 09:49:54 +0000 (11:49 +0200)]
ref #7405 fix update script for renaming WorkingSet/DescriptiveDataSet

6 years agoref #6879 fix update script for admin user group uuid
Andreas Müller [Fri, 11 May 2018 09:48:20 +0000 (11:48 +0200)]
ref #6879 fix update script for admin user group uuid

6 years agoFix TableCreator for Rights table name
Andreas Müller [Fri, 11 May 2018 09:46:23 +0000 (11:46 +0200)]
Fix TableCreator for Rights table name

6 years agoref #2335 fix preferredRepresentation for DescriptiveDataSet with no representation
Andreas Müller [Fri, 11 May 2018 09:45:39 +0000 (11:45 +0200)]
ref #2335 fix preferredRepresentation for DescriptiveDataSet with no representation

6 years agoref #7405 update httpInvokerServices id for httpDescriptiveDataSetService
Andreas Müller [Wed, 9 May 2018 13:08:06 +0000 (15:08 +0200)]
ref #7405  update httpInvokerServices id for httpDescriptiveDataSetService

6 years agofix #7144 Add area level to countries
Andreas Müller [Wed, 9 May 2018 11:13:29 +0000 (13:13 +0200)]
fix #7144 Add area level to countries

6 years agoref #7144, ref #7405 update test term datasets
Andreas Müller [Wed, 9 May 2018 11:10:09 +0000 (13:10 +0200)]
ref #7144, ref #7405 update test term datasets

6 years agoref #7384 Order SpecimenTypeDesignationStatus according to new order in vocabulary
Andreas Müller [Tue, 8 May 2018 23:25:40 +0000 (01:25 +0200)]
ref #7384 Order SpecimenTypeDesignationStatus according to new order in vocabulary

6 years agoref #6720 fix integer to string in occurrence search
Andreas Müller [Tue, 8 May 2018 22:23:27 +0000 (00:23 +0200)]
ref #6720 fix integer to string in occurrence search

6 years agoref #6752 implement verbatimDate for Reference (Parser and Formatter still missing)
Andreas Müller [Tue, 8 May 2018 16:02:33 +0000 (18:02 +0200)]
ref #6752 implement verbatimDate for Reference (Parser and Formatter still missing)

6 years agofix TimePeriod hashCode
Andreas Müller [Tue, 8 May 2018 16:00:29 +0000 (18:00 +0200)]
fix TimePeriod hashCode

6 years agocleanup
Andreas Müller [Tue, 8 May 2018 15:59:07 +0000 (17:59 +0200)]
cleanup

6 years agoref #6720 make individualCount a string
Andreas Müller [Tue, 8 May 2018 12:54:54 +0000 (14:54 +0200)]
ref #6720 make individualCount a string

6 years agocleanup
Andreas Müller [Tue, 8 May 2018 12:53:46 +0000 (14:53 +0200)]
cleanup

6 years agoref #7096 add symbol2 to xmltype
Andreas Müller [Tue, 8 May 2018 12:13:53 +0000 (14:13 +0200)]
ref #7096 add symbol2 to xmltype

6 years agoref #7238 adapt xmltype for familyName and givenName
Andreas Müller [Tue, 8 May 2018 12:13:18 +0000 (14:13 +0200)]
ref #7238 adapt xmltype for familyName and givenName

6 years agoref #7210 add salt to FirstDataInserterTest test data
Andreas Müller [Tue, 8 May 2018 11:55:30 +0000 (13:55 +0200)]
ref #7210 add salt to FirstDataInserterTest test data

6 years agoref #6699 remove term version from FirstDataInserterTest test data
Andreas Müller [Tue, 8 May 2018 11:54:53 +0000 (13:54 +0200)]
ref #6699 remove term version from FirstDataInserterTest test data

6 years agocleanup
Andreas Müller [Tue, 8 May 2018 11:54:11 +0000 (13:54 +0200)]
cleanup

6 years agoref #6581 preliminary revert some changes for making nomenclaturalReference an Origin...
Andreas Müller [Tue, 8 May 2018 11:46:06 +0000 (13:46 +0200)]
ref #6581 preliminary revert some changes for making nomenclaturalReference an OriginalSource

6 years agoref #2335 adapt test data schema for identifiable DescriptiveDataSet
Andreas Müller [Tue, 8 May 2018 11:34:03 +0000 (13:34 +0200)]
ref #2335 adapt test data schema for identifiable DescriptiveDataSet

6 years agoref #6581 add TaxonName.nomenclaturalSource_id and adapt constructor visibility for...
Andreas Müller [Tue, 8 May 2018 11:24:52 +0000 (13:24 +0200)]
ref #6581 add TaxonName.nomenclaturalSource_id and adapt constructor visibility for DescriptionElementSource

6 years agoref #7238 fix givenname camelCase issue in AgentDaoImplTest
Andreas Müller [Tue, 8 May 2018 10:57:52 +0000 (12:57 +0200)]
ref #7238 fix givenname camelCase issue in AgentDaoImplTest

6 years agoref #7210 fix salt in dataset.dtd
Andreas Müller [Tue, 8 May 2018 10:37:07 +0000 (12:37 +0200)]
ref #7210 fix salt in dataset.dtd

6 years agoref #6588 add uuids to ExternalLinkType
Andreas Müller [Tue, 8 May 2018 10:36:21 +0000 (12:36 +0200)]
ref #6588 add uuids to ExternalLinkType

6 years agoref #6581 add uuid to OriginalSourceType.NomenclaturalReference
Andreas Müller [Tue, 8 May 2018 08:24:57 +0000 (10:24 +0200)]
ref #6581 add uuid to OriginalSourceType.NomenclaturalReference

6 years agoref #6916 add OriginalSourceBase to IntextReference
Andreas Müller [Tue, 8 May 2018 08:15:42 +0000 (10:15 +0200)]
ref #6916 add OriginalSourceBase to IntextReference

6 years agofix #6943 add zoological in-authors to TaxonName
Andreas Müller [Tue, 8 May 2018 07:02:34 +0000 (09:02 +0200)]
fix #6943 add zoological in-authors to TaxonName

6 years agofix #7210 Add salt for User
Andreas Müller [Tue, 8 May 2018 06:22:57 +0000 (08:22 +0200)]
fix #7210 Add salt for User

6 years agoref #7238 rename lastName and firstName
Andreas Müller [Mon, 7 May 2018 23:22:04 +0000 (01:22 +0200)]
ref #7238 rename lastName and firstName

6 years agofix #7276 Make User.emailAddress a unique field
Andreas Müller [Mon, 7 May 2018 21:19:53 +0000 (23:19 +0200)]
fix #7276  Make User.emailAddress a unique field

6 years agoref #6879 fix stepName
Andreas Müller [Mon, 7 May 2018 20:59:22 +0000 (22:59 +0200)]
ref #6879 fix stepName

6 years agofix #7405 Rename WorkingSet to DescriptiveDataSet
Andreas Müller [Mon, 7 May 2018 20:57:36 +0000 (22:57 +0200)]
fix #7405 Rename WorkingSet to DescriptiveDataSet

6 years agocleanup
Andreas Müller [Mon, 7 May 2018 19:26:09 +0000 (21:26 +0200)]
cleanup

6 years agofix #7374 Set titleCache of feature trees to protected
Andreas Müller [Mon, 7 May 2018 19:25:50 +0000 (21:25 +0200)]
fix #7374 Set titleCache of feature trees to protected

6 years agofix #2335 Make WorkingSet IdentifiableEntity
Andreas Müller [Mon, 7 May 2018 16:50:49 +0000 (18:50 +0200)]
fix #2335 Make WorkingSet IdentifiableEntity

6 years agofix #6879 Update uuid and name for admin user group
Andreas Müller [Mon, 7 May 2018 15:46:16 +0000 (17:46 +0200)]
fix #6879 Update uuid and name for admin user group

6 years agofix #7096 Add second symbol attribute to DefinedTermBase
Andreas Müller [Mon, 7 May 2018 15:38:52 +0000 (17:38 +0200)]
fix #7096 Add second symbol attribute to DefinedTermBase

6 years agoref #7109 Rename nom. valid to nom. val.
Andreas Müller [Mon, 7 May 2018 15:24:30 +0000 (17:24 +0200)]
ref #7109 Rename nom. valid to nom. val.

6 years agoref #6581 add DescriptionElementSource to TaxonName import
Andreas Müller [Mon, 7 May 2018 14:59:10 +0000 (16:59 +0200)]
ref #6581 add DescriptionElementSource to TaxonName import

6 years agoref #6581 nomRef to OriginalSource allow setNomRef by Interface for compiling
Andreas Müller [Fri, 9 Jun 2017 13:23:45 +0000 (15:23 +0200)]
ref #6581 nomRef to OriginalSource allow setNomRef by Interface for compiling

6 years agoref #6588 fist untested implementation of externalLink
Andreas Müller [Fri, 9 Jun 2017 09:51:50 +0000 (11:51 +0200)]
ref #6588 fist untested implementation of externalLink

6 years agocleanup
Andreas Müller [Fri, 9 Jun 2017 09:47:43 +0000 (11:47 +0200)]
cleanup

6 years agoref #6581 first incomplete version for making nomenclatural reference an orginal...
Andreas Müller [Fri, 9 Jun 2017 08:19:06 +0000 (10:19 +0200)]
ref #6581 first incomplete version for making nomenclatural reference an orginal source

6 years agoinitialize CDM 4.9 schema update
Andreas Müller [Fri, 9 Jun 2017 08:18:05 +0000 (10:18 +0200)]
initialize CDM 4.9 schema update

6 years agoadd the possibility to search for classifications in getTaxonNodeUuidAndTitleCacheOfA...
Katja Luther [Wed, 9 May 2018 10:57:03 +0000 (12:57 +0200)]
add the possibility to search for classifications in getTaxonNodeUuidAndTitleCacheOfAcceptedTaxaByClassification

6 years agominor
Katja Luther [Mon, 7 May 2018 11:58:35 +0000 (13:58 +0200)]
minor

6 years agosmaller changes in ABCD import
Katja Luther [Mon, 7 May 2018 10:18:06 +0000 (12:18 +0200)]
smaller changes in ABCD import

6 years agoFix BioCaseQuery test
Patrick Plitzner [Mon, 7 May 2018 11:32:52 +0000 (13:32 +0200)]
Fix BioCaseQuery test

6 years agoadd new longRunningTasksService for monitored operations
Katja Luther [Mon, 7 May 2018 09:23:54 +0000 (11:23 +0200)]
add new longRunningTasksService for monitored operations

6 years agocleanup
Andreas Müller [Sun, 6 May 2018 13:01:03 +0000 (15:01 +0200)]
cleanup

6 years agosome minor changes in CacheUpdater (also add PolytomousKey)
Andreas Müller [Fri, 4 May 2018 11:11:48 +0000 (13:11 +0200)]
some minor changes in CacheUpdater (also add PolytomousKey)

6 years agocleanup
Andreas Müller [Fri, 4 May 2018 11:11:09 +0000 (13:11 +0200)]
cleanup

6 years agoref #6526 extract comparator and add another for TypeDesignationBase
Patrick Plitzner [Thu, 3 May 2018 11:51:59 +0000 (13:51 +0200)]
ref #6526 extract comparator and add another for TypeDesignationBase

6 years agoref #6359, ref #3740 (setSubtree) some further improvements, mostly for publish
Andreas Müller [Thu, 3 May 2018 11:33:24 +0000 (13:33 +0200)]
ref #6359, ref #3740 (setSubtree) some further improvements, mostly for publish

6 years agoadd bean initializing to TaxonNodeServiceImpl.loadChildNodesOfTaxonNode again
Andreas Müller [Thu, 3 May 2018 10:31:35 +0000 (12:31 +0200)]
add bean initializing to TaxonNodeServiceImpl.loadChildNodesOfTaxonNode again

6 years agoref #6359, ref #3740 (setSubtree) add progress monitor progress computation, first...
Andreas Müller [Thu, 3 May 2018 10:02:55 +0000 (12:02 +0200)]
ref #6359, ref #3740 (setSubtree) add progress monitor progress computation, first version of partitioning

6 years agocleanup
Andreas Müller [Thu, 3 May 2018 09:55:12 +0000 (11:55 +0200)]
cleanup