cdmlib.git
3 years agoref #9595 add SampleDesignation uuid to DefinedTerm
Andreas Müller [Fri, 30 Apr 2021 05:42:14 +0000 (07:42 +0200)]
ref #9595 add SampleDesignation uuid to DefinedTerm

3 years agominor
Andreas Müller [Fri, 30 Apr 2021 05:17:50 +0000 (07:17 +0200)]
minor

3 years agoref #9595 move xxxPreferredDetermination from facade to SpecimenOrObservationBase
Andreas Müller [Fri, 30 Apr 2021 05:17:31 +0000 (07:17 +0200)]
ref #9595 move xxxPreferredDetermination from facade to SpecimenOrObservationBase

3 years agoref #5573, ref #7612 some doc
Andreas Müller [Fri, 30 Apr 2021 05:15:53 +0000 (07:15 +0200)]
ref #5573, ref #7612 some doc

3 years agocleanup
Andreas Müller [Thu, 29 Apr 2021 21:05:55 +0000 (23:05 +0200)]
cleanup

3 years agoremove generics from Identifier class
Andreas Müller [Thu, 29 Apr 2021 21:04:16 +0000 (23:04 +0200)]
remove generics from Identifier class

3 years agoref #9593: revert some changes in taxonDao not belonging to this ticket
Katja Luther [Thu, 29 Apr 2021 13:30:10 +0000 (15:30 +0200)]
ref #9593: revert some changes in taxonDao not belonging to this ticket

3 years agoref #9329 adapting json configuration to new sec reference structure and fields
Andreas Kohlbecker [Thu, 29 Apr 2021 09:59:04 +0000 (11:59 +0200)]
ref #9329 adapting json configuration to new sec reference structure and fields

3 years agoref #9575: test adaption
Katja Luther [Thu, 29 Apr 2021 06:43:29 +0000 (08:43 +0200)]
ref #9575: test adaption

3 years agoref #9575: revert test adaption
Katja Luther [Wed, 28 Apr 2021 15:31:14 +0000 (17:31 +0200)]
ref #9575: revert test adaption

3 years agocleanup
Andreas Müller [Wed, 28 Apr 2021 18:28:54 +0000 (20:28 +0200)]
cleanup

3 years agoref #9575 adapt tests for editor search with authors
Andreas Müller [Wed, 28 Apr 2021 18:28:32 +0000 (20:28 +0200)]
ref #9575 adapt tests for editor search with authors

3 years agoref #1602, ref #5573, ref #7612 Include artist in MediaDefaultCacheStrategy
Andreas Müller [Wed, 28 Apr 2021 17:02:54 +0000 (19:02 +0200)]
ref #1602, ref #5573, ref #7612 Include artist in MediaDefaultCacheStrategy

3 years agocleanup
Andreas Müller [Wed, 28 Apr 2021 17:01:50 +0000 (19:01 +0200)]
cleanup

3 years agoref #7612, ref #5573 adapt MediaSpecimenDefaultCacheStrategy to show file name only...
Andreas Müller [Wed, 28 Apr 2021 15:05:46 +0000 (17:05 +0200)]
ref #7612, ref #5573 adapt MediaSpecimenDefaultCacheStrategy to show file name only if no other information exists

3 years agocleanup
Andreas Müller [Wed, 28 Apr 2021 14:52:53 +0000 (16:52 +0200)]
cleanup

3 years agoref #9591 defined order of item in FieldUnitDTO.TreeLabels
Andreas Kohlbecker [Wed, 28 Apr 2021 14:06:00 +0000 (16:06 +0200)]
ref #9591 defined order of item in FieldUnitDTO.TreeLabels

3 years agoref #9575: adapt findTaxaAndNames for doAuthors, add test case
Katja Luther [Wed, 28 Apr 2021 11:50:06 +0000 (13:50 +0200)]
ref #9575: adapt findTaxaAndNames for doAuthors, add test case

3 years agoref #9593: add polytomouskey handling in PostMergeEntityListener to avoid NULL values...
Katja Luther [Wed, 28 Apr 2021 10:58:09 +0000 (12:58 +0200)]
ref #9593: add polytomouskey handling in PostMergeEntityListener to avoid NULL values - avoid NPE

3 years agoref #9593: add polytomouskey handling in PostMergeEntityListener to avoid NULL values
Katja Luther [Wed, 28 Apr 2021 10:02:19 +0000 (12:02 +0200)]
ref #9593: add polytomouskey handling in PostMergeEntityListener to avoid NULL values

3 years agoref #9590: fix test
Katja Luther [Tue, 27 Apr 2021 13:32:59 +0000 (15:32 +0200)]
ref #9590: fix test

3 years agoref #9590: fix test
Katja Luther [Tue, 27 Apr 2021 13:06:12 +0000 (15:06 +0200)]
ref #9590: fix test

3 years agoref #9590: adapt business test
Katja Luther [Tue, 27 Apr 2021 12:43:44 +0000 (14:43 +0200)]
ref #9590: adapt business test

3 years agoref #9591 reaming dto field specimenIdentifier -> shortTitle & adding media title...
Andreas Kohlbecker [Tue, 27 Apr 2021 12:33:46 +0000 (14:33 +0200)]
ref #9591 reaming dto field specimenIdentifier -> shortTitle & adding media title to media specimens

3 years agoref #9590: add synonym with secundum reference to swap test
Katja Luther [Tue, 27 Apr 2021 11:14:18 +0000 (13:14 +0200)]
ref #9590: add synonym with secundum reference to swap test

3 years agoref #9590: fix, only swap the names swapSynonymAndAccepted
Katja Luther [Tue, 27 Apr 2021 11:11:54 +0000 (13:11 +0200)]
ref #9590: fix, only swap the names swapSynonymAndAccepted

3 years agoref #9590: fix ObjectDeletedException in swapSynonymAndAccepted
Katja Luther [Tue, 27 Apr 2021 07:19:33 +0000 (09:19 +0200)]
ref #9590: fix ObjectDeletedException in swapSynonymAndAccepted

3 years agoref #9589: adapt test
Katja Luther [Mon, 26 Apr 2021 19:31:03 +0000 (21:31 +0200)]
ref #9589: adapt test

3 years agodoc
Andreas Kohlbecker [Mon, 26 Apr 2021 15:04:21 +0000 (17:04 +0200)]
doc

3 years agoref #9588 more reliable derivate tree dependant data aggregation - renaming field
Andreas Kohlbecker [Mon, 26 Apr 2021 14:44:31 +0000 (16:44 +0200)]
ref #9588 more reliable derivate tree dependant data aggregation - renaming field

3 years agoref #9588 more reliable derivate tree dependant data aggregation
Andreas Kohlbecker [Mon, 26 Apr 2021 14:35:59 +0000 (16:35 +0200)]
ref #9588 more reliable derivate tree dependant data aggregation

3 years agosecundum reference argument as uuid for moveSynonymToAnotherAccppted
Katja Luther [Mon, 26 Apr 2021 14:44:53 +0000 (16:44 +0200)]
secundum reference argument as uuid for moveSynonymToAnotherAccppted

3 years agocleanup
Andreas Müller [Thu, 22 Apr 2021 19:33:40 +0000 (21:33 +0200)]
cleanup

3 years agoadd SchemaUpdater for 5.23.0 and fix #9536 (remove old columns and tables)
Andreas Müller [Thu, 22 Apr 2021 19:33:20 +0000 (21:33 +0200)]
add SchemaUpdater for 5.23.0 and fix #9536 (remove old columns and tables)

3 years agoref #9586 fixing wrong total count in pager
Andreas Kohlbecker [Wed, 21 Apr 2021 12:44:14 +0000 (14:44 +0200)]
ref #9586 fixing wrong total count in pager

3 years agocleanup
Andreas Müller [Tue, 20 Apr 2021 14:16:50 +0000 (16:16 +0200)]
cleanup

3 years agofix NPE and handle not existing targetEntity
Andreas Müller [Tue, 20 Apr 2021 14:16:31 +0000 (16:16 +0200)]
fix NPE and handle not existing targetEntity

3 years agoref #6542 add warnAndDoNotOverrideIfExists to identifier import
Andreas Müller [Wed, 24 Mar 2021 11:35:23 +0000 (12:35 +0100)]
ref #6542 add warnAndDoNotOverrideIfExists to identifier import

3 years agoref #6542 update Identifier import to support value update and more logging
Andreas Müller [Tue, 23 Mar 2021 10:39:18 +0000 (11:39 +0100)]
ref #6542 update Identifier import to support value update and more logging

3 years agocleanup
Andreas Müller [Mon, 22 Mar 2021 16:32:36 +0000 (17:32 +0100)]
cleanup

3 years agoadd updateIdentifier to IdentifierImport
Andreas Müller [Mon, 22 Mar 2021 16:32:17 +0000 (17:32 +0100)]
add updateIdentifier to IdentifierImport

3 years agoadd test for tribe parsing which has a suborder ending
Andreas Müller [Fri, 16 Apr 2021 17:47:04 +0000 (19:47 +0200)]
add test for tribe parsing which has a suborder ending

3 years agocleanup
Andreas Müller [Fri, 16 Apr 2021 17:46:30 +0000 (19:46 +0200)]
cleanup

3 years agofix #9583 bold formatting for main areas with at least 1 native sub-area
Andreas Müller [Fri, 16 Apr 2021 17:45:40 +0000 (19:45 +0200)]
fix #9583 bold formatting for main areas with at least 1 native sub-area

3 years agoUpdating develop poms back to pre merge state
jenkins [Thu, 15 Apr 2021 14:55:45 +0000 (16:55 +0200)]
Updating develop poms back to pre merge state

3 years agoMerge branch 'master' into develop
jenkins [Thu, 15 Apr 2021 14:55:43 +0000 (16:55 +0200)]
Merge branch 'master' into develop

3 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 15 Apr 2021 14:55:42 +0000 (16:55 +0200)]
updating develop poms to master versions to avoid merge conflicts

3 years agoMerge branch 'release/5.22.0' 5.22.0
jenkins [Thu, 15 Apr 2021 14:55:37 +0000 (16:55 +0200)]
Merge branch 'release/5.22.0'

3 years agoupdating poms for branch'release/5.22.0' with non-snapshot versions origin/release/5.22.0
jenkins [Thu, 15 Apr 2021 14:35:23 +0000 (16:35 +0200)]
updating poms for branch'release/5.22.0' with non-snapshot versions

3 years agoupdating poms for 5.23.0-SNAPSHOT development
jenkins [Thu, 15 Apr 2021 14:08:52 +0000 (16:08 +0200)]
updating poms for 5.23.0-SNAPSHOT development

3 years agocleanup
Andreas Müller [Wed, 14 Apr 2021 16:57:22 +0000 (18:57 +0200)]
cleanup

3 years agoref #9578 , ref #8889 fix duplicate handling in getTaxonDistributionDTO
Andreas Müller [Wed, 14 Apr 2021 16:57:09 +0000 (18:57 +0200)]
ref #9578 , ref #8889 fix duplicate handling in getTaxonDistributionDTO

3 years agocleanup
Andreas Müller [Wed, 14 Apr 2021 16:17:46 +0000 (18:17 +0200)]
cleanup

3 years agoref #9578 , ref #8889 add parentNode in getTaxonDistributionDTO() instead and handle...
Andreas Müller [Wed, 14 Apr 2021 16:17:21 +0000 (18:17 +0200)]
ref #9578 , ref #8889 add parentNode in getTaxonDistributionDTO() instead and handle openChildren correctly there

3 years agohandle UTF8 correctly in HGTaxonComparatorTest
Andreas Müller [Wed, 14 Apr 2021 15:43:29 +0000 (17:43 +0200)]
handle UTF8 correctly in HGTaxonComparatorTest

3 years agoref #9578 , ref #8889 switch on sorting for recursive=false in TaxonNodeServiceImpl...
Andreas Müller [Wed, 14 Apr 2021 15:40:26 +0000 (17:40 +0200)]
ref #9578 , ref #8889 switch on sorting for recursive=false in TaxonNodeServiceImpl.loadChildNodesOfTaxonNode()

3 years agocleanup
Andreas Müller [Wed, 14 Apr 2021 15:37:54 +0000 (17:37 +0200)]
cleanup

3 years agoref #9578 , ref #8889 fix behavior of TaxonNodeDaoHibernateImpl.listChildrenOf()...
Andreas Müller [Wed, 14 Apr 2021 15:35:57 +0000 (17:35 +0200)]
ref #9578 , ref #8889 fix behavior of TaxonNodeDaoHibernateImpl.listChildrenOf() with recursive=true and comparator

* current implementation also returns the parent which is semantically not correct and differs from implementation without comparator

3 years agoref #9556 avoiding collection of full derivatives tree in DTOs - using maxdepth parameter
Andreas Kohlbecker [Wed, 14 Apr 2021 15:04:21 +0000 (17:04 +0200)]
ref #9556 avoiding collection of full derivatives tree in DTOs - using maxdepth parameter

3 years ago ref #9556 avoiding collection of full derivatives tree in DTOs - bugfix
Andreas Kohlbecker [Wed, 14 Apr 2021 11:28:33 +0000 (13:28 +0200)]
 ref #9556 avoiding collection of full derivatives tree in DTOs - bugfix

3 years agoref #9578: avoid duplicates for parent and child selection
Katja Luther [Wed, 14 Apr 2021 07:51:43 +0000 (09:51 +0200)]
ref #9578: avoid duplicates for parent and child selection

3 years agoref #9332 adapting init strategy to renamed field source -> designationSource
Andreas Kohlbecker [Tue, 13 Apr 2021 14:11:23 +0000 (16:11 +0200)]
ref #9332 adapting init strategy to renamed field source -> designationSource

3 years agoref #9556 avoiding collection of full derivatives tree in DTOs
Andreas Kohlbecker [Tue, 13 Apr 2021 11:53:42 +0000 (13:53 +0200)]
ref #9556 avoiding collection of full derivatives tree in DTOs

3 years agoref #8233: add pref stable identifier to cloneTypedesignation method
Katja Luther [Tue, 13 Apr 2021 11:27:14 +0000 (13:27 +0200)]
ref #8233: add pref stable identifier to cloneTypedesignation method

3 years agofix ClassNotFoundException
Katja Luther [Mon, 12 Apr 2021 07:49:36 +0000 (09:49 +0200)]
fix ClassNotFoundException

3 years agoref #9541 improve label for taxon nodes in ReferencingObjectFormatter
Andreas Müller [Fri, 2 Apr 2021 18:19:48 +0000 (20:19 +0200)]
ref #9541 improve label for taxon nodes in ReferencingObjectFormatter

3 years agoref #9541 fix potential NPE in distributionDto loading
Andreas Müller [Fri, 2 Apr 2021 16:21:25 +0000 (18:21 +0200)]
ref #9541 fix potential NPE in distributionDto loading

3 years agocleanup
Andreas Müller [Fri, 2 Apr 2021 16:20:47 +0000 (18:20 +0200)]
cleanup

3 years agoref #9541 q&d add target description for untargeted sources
Andreas Müller [Thu, 1 Apr 2021 23:42:12 +0000 (01:42 +0200)]
ref #9541 q&d add target description for untargeted sources

3 years agocleanup
Andreas Müller [Thu, 1 Apr 2021 23:18:20 +0000 (01:18 +0200)]
cleanup

3 years agofix #9578 remove duplicates from distributionDto service (complete test)
Andreas Müller [Thu, 1 Apr 2021 23:18:07 +0000 (01:18 +0200)]
fix #9578 remove duplicates from distributionDto service (complete test)

3 years agofix #9578 remove duplicates from distributionDto service
Andreas Müller [Thu, 1 Apr 2021 23:08:06 +0000 (01:08 +0200)]
fix #9578 remove duplicates from distributionDto service

3 years agocleanup
Andreas Müller [Thu, 1 Apr 2021 22:58:16 +0000 (00:58 +0200)]
cleanup

3 years agoref #9541 add getBestOpenInTargetType to ReferencingObjectDto
Andreas Müller [Thu, 1 Apr 2021 22:08:35 +0000 (00:08 +0200)]
ref #9541 add getBestOpenInTargetType to ReferencingObjectDto

3 years agoref #9541 fix query on IdentifiableSource and SingleSource
Andreas Müller [Thu, 1 Apr 2021 01:06:48 +0000 (03:06 +0200)]
ref #9541 fix query on IdentifiableSource and SingleSource

3 years agoref #9541 Source for => for
Andreas Müller [Wed, 31 Mar 2021 23:55:13 +0000 (01:55 +0200)]
ref #9541 Source for => for

3 years agoref #9541 further improve referencing object handling
Andreas Müller [Wed, 31 Mar 2021 22:46:11 +0000 (00:46 +0200)]
ref #9541 further improve referencing object handling

3 years agoref #9541 deproxy target entity and referencing entity
Andreas Müller [Wed, 31 Mar 2021 20:35:20 +0000 (22:35 +0200)]
ref #9541 deproxy target entity and referencing entity

3 years agoref #9541 DTOs for referencing objects and server side initialization
Andreas Müller [Wed, 31 Mar 2021 19:58:54 +0000 (21:58 +0200)]
ref #9541 DTOs for referencing objects and server side initialization

3 years agoref #9541 move distance formatting to own formatting class
Andreas Müller [Wed, 31 Mar 2021 19:28:22 +0000 (21:28 +0200)]
ref #9541 move distance formatting to own formatting class

3 years agocleanup
Andreas Müller [Wed, 31 Mar 2021 16:55:22 +0000 (18:55 +0200)]
cleanup

3 years agoref #9537: fix select for characterDto -continue
Katja Luther [Wed, 31 Mar 2021 16:49:45 +0000 (18:49 +0200)]
ref #9537: fix select for characterDto -continue

3 years agoref #9537: fix select for characterDto
Katja Luther [Wed, 31 Mar 2021 16:25:31 +0000 (18:25 +0200)]
ref #9537: fix select for characterDto

3 years agoref #9537: adapt CharacterDto to ratioTo - avoid NPE
Katja Luther [Wed, 31 Mar 2021 16:20:56 +0000 (18:20 +0200)]
ref #9537: adapt CharacterDto to ratioTo - avoid NPE

3 years agoref #9537: adapt CharacterDto to ratioTo
Katja Luther [Wed, 31 Mar 2021 16:19:21 +0000 (18:19 +0200)]
ref #9537: adapt CharacterDto to ratioTo

3 years agoref #9574: add html tags to nameTypeDesignation string
Katja Luther [Wed, 31 Mar 2021 10:14:05 +0000 (12:14 +0200)]
ref #9574: add html tags to nameTypeDesignation string

3 years agoref #9515: remove second call setIndividualsAssociationDescriptionPerTaxon
Katja Luther [Wed, 31 Mar 2021 08:37:11 +0000 (10:37 +0200)]
ref #9515: remove second call setIndividualsAssociationDescriptionPerTaxon

3 years agoref #9531: adapt error message for original spelling
Katja Luther [Wed, 31 Mar 2021 08:28:02 +0000 (10:28 +0200)]
ref  #9531: adapt error message for original spelling

3 years agofix #9571 some more documentation
Andreas Müller [Tue, 30 Mar 2021 21:54:19 +0000 (23:54 +0200)]
fix #9571 some more documentation

3 years agofix #9571 fix tests in persistence and service
Andreas Müller [Tue, 30 Mar 2021 21:47:58 +0000 (23:47 +0200)]
fix #9571 fix tests in persistence and service

3 years agofix tests for now more specific cache strategy
Andreas Müller [Tue, 30 Mar 2021 21:39:12 +0000 (23:39 +0200)]
fix tests for now more specific cache strategy

3 years agocleanup
Andreas Müller [Tue, 30 Mar 2021 21:38:50 +0000 (23:38 +0200)]
cleanup

3 years agofix #9571 also allow new formatting for databases and maps
Andreas Müller [Tue, 30 Mar 2021 21:38:30 +0000 (23:38 +0200)]
fix #9571 also allow new formatting for databases and maps

3 years agorename ref=>sec
Andreas Müller [Tue, 30 Mar 2021 21:01:35 +0000 (23:01 +0200)]
rename ref=>sec

3 years agoadd short specific test
Andreas Müller [Tue, 30 Mar 2021 21:00:45 +0000 (23:00 +0200)]
add short specific test

3 years agofix #9571 improve sec-formatting for taxa with webpage secundum
Andreas Müller [Tue, 30 Mar 2021 21:00:23 +0000 (23:00 +0200)]
fix #9571 improve sec-formatting for taxa with webpage secundum

3 years agocleanup
Andreas Müller [Tue, 30 Mar 2021 20:58:41 +0000 (22:58 +0200)]
cleanup

3 years agofix #9570 cleanup
Andreas Müller [Tue, 30 Mar 2021 19:25:15 +0000 (21:25 +0200)]
fix #9570 cleanup

3 years agofix #9570 use name cache strategy for tagged text creation
Andreas Müller [Tue, 30 Mar 2021 19:21:51 +0000 (21:21 +0200)]
fix #9570 use name cache strategy for tagged text creation

3 years agofix #9570 fix tagged text for NameTypeDesignation
Andreas Müller [Tue, 30 Mar 2021 19:02:23 +0000 (21:02 +0200)]
fix #9570 fix tagged text for NameTypeDesignation