cdmlib.git
5 years agofix regression in fieldUnitDTO with wrong collector+collectionNr
Katja Luther [Wed, 20 Mar 2019 10:12:36 +0000 (11:12 +0100)]
fix regression in fieldUnitDTO with wrong collector+collectionNr

5 years agoSet term type in constructor for term and voc DTO
Patrick Plitzner [Wed, 20 Mar 2019 07:01:36 +0000 (08:01 +0100)]
Set term type in constructor for term and voc DTO

5 years agoref #4545: add getUuidAndAbbrevTitleCache with class parameter
Katja Luther [Tue, 19 Mar 2019 12:15:24 +0000 (13:15 +0100)]
ref #4545: add getUuidAndAbbrevTitleCache with class parameter

5 years agoref #4545: add getUuidAndAbbrevTitleCache with class parameter
Katja Luther [Tue, 19 Mar 2019 11:57:11 +0000 (12:57 +0100)]
ref #4545: add getUuidAndAbbrevTitleCache with class parameter

5 years agominor
Andreas Müller [Mon, 18 Mar 2019 13:27:04 +0000 (14:27 +0100)]
minor

5 years agocleanup
Andreas Müller [Mon, 18 Mar 2019 13:25:12 +0000 (14:25 +0100)]
cleanup

5 years agoref #8178 Add vocabulary parameter to create child node service method
Patrick Plitzner [Mon, 18 Mar 2019 08:39:20 +0000 (09:39 +0100)]
ref #8178 Add vocabulary parameter to create child node service method

5 years agoref #8169 adding missing @Transactional to VersionableServiceBase.isDeletable()
Andreas Kohlbecker [Fri, 15 Mar 2019 14:30:21 +0000 (15:30 +0100)]
ref #8169 adding missing @Transactional to VersionableServiceBase.isDeletable()

5 years agoref #8162 update to model cache
Patrick Plitzner [Fri, 15 Mar 2019 07:35:30 +0000 (08:35 +0100)]
ref #8162 update to model cache

5 years agoref #6413 Throw exception for more than 1 or 0 FieldUnits
Patrick Plitzner [Thu, 14 Mar 2019 12:07:50 +0000 (13:07 +0100)]
ref #6413 Throw exception for more than 1 or 0 FieldUnits

5 years agoAdapt test to change in clone() method
Patrick Plitzner [Thu, 14 Mar 2019 12:05:53 +0000 (13:05 +0100)]
Adapt test to change in clone() method

5 years agoref #6413 Add service method for duplicating type specimen
Patrick Plitzner [Thu, 14 Mar 2019 10:29:38 +0000 (11:29 +0100)]
ref #6413 Add service method for duplicating type specimen

5 years agoFix clone() method of SpecimenOrObservationBase
Patrick Plitzner [Thu, 14 Mar 2019 09:43:48 +0000 (10:43 +0100)]
Fix clone() method of SpecimenOrObservationBase

5 years agoref #8175: name facts in a separate table
Katja Luther [Wed, 13 Mar 2019 11:50:19 +0000 (12:50 +0100)]
ref #8175: name facts in a separate table

5 years agoRevert "ref #8173 removing 'remoting' profile activation from ide launchers"
Andreas Kohlbecker [Wed, 13 Mar 2019 11:17:12 +0000 (12:17 +0100)]
Revert "ref #8173 removing 'remoting' profile activation from ide launchers"

This reverts commit 027eaf7c3181f62d725e7b5a677284f07cd5b43b.

5 years agoRevert "ref #8173 activation of profile remoting in the web.xml"
Andreas Kohlbecker [Wed, 13 Mar 2019 11:16:47 +0000 (12:16 +0100)]
Revert "ref #8173 activation of profile remoting in the web.xml"

This reverts commit f2d3f4d37174244ca577203d1228256c6f787a29.

5 years agoref #8173 activation of profile remoting in the web.xml
Andreas Kohlbecker [Tue, 12 Mar 2019 14:48:35 +0000 (15:48 +0100)]
ref #8173 activation of profile remoting in the web.xml

5 years agofix #8175: name facts should be exported by cdm light export
Katja Luther [Tue, 12 Mar 2019 12:06:07 +0000 (13:06 +0100)]
fix #8175: name facts should be exported by cdm light export

5 years agoref #8115: fix move elements for not persisted target description
Katja Luther [Tue, 12 Mar 2019 10:22:28 +0000 (11:22 +0100)]
ref #8115: fix move elements for not persisted target description

5 years agoref #8173 removing 'remoting' profile activation from ide launchers
Andreas Kohlbecker [Tue, 12 Mar 2019 08:09:07 +0000 (09:09 +0100)]
ref #8173 removing 'remoting' profile activation from ide launchers

5 years agofix #8173 spring profile 'remoting' activated by default
Andreas Kohlbecker [Mon, 11 Mar 2019 11:55:34 +0000 (12:55 +0100)]
fix #8173 spring profile 'remoting' activated by default

5 years agofix #8171 internally caching new connection in WrappedCdmDataSource to avoid connecti...
Andreas Kohlbecker [Fri, 8 Mar 2019 16:22:26 +0000 (17:22 +0100)]
fix #8171 internally caching new connection in WrappedCdmDataSource to avoid connection leaks

5 years agoref #7106 proper transaction management in turn of solving the problem in CdmReposito...
Andreas Kohlbecker [Fri, 8 Mar 2019 16:20:49 +0000 (17:20 +0100)]
ref #7106 proper transaction management in turn of solving the problem in CdmRepository.getSession()

5 years agolog level for cdm caches to WARN to avoid constant noise from the TransientCdmCacher
Andreas Kohlbecker [Fri, 8 Mar 2019 16:16:43 +0000 (17:16 +0100)]
log level for cdm caches to WARN to avoid constant noise from the TransientCdmCacher

5 years agofix #7874: updateCaches always returns true
Katja Luther [Mon, 11 Mar 2019 11:12:15 +0000 (12:12 +0100)]
fix #7874: updateCaches always returns true

5 years agoref #7106 logging unintentially creation of unmanaged new session in DaoBase with...
Andreas Kohlbecker [Thu, 7 Mar 2019 13:54:03 +0000 (14:54 +0100)]
ref #7106 logging unintentially creation of unmanaged new session in DaoBase with stacktrace

5 years agoref #7106 throwing Exception instead of unintentially creating unmanaged new session
Andreas Kohlbecker [Thu, 7 Mar 2019 13:36:16 +0000 (14:36 +0100)]
ref #7106 throwing Exception instead of unintentially creating unmanaged new session

5 years agoref #8096: use subprogressmonitor for cache updater
Katja Luther [Thu, 7 Mar 2019 09:08:32 +0000 (10:08 +0100)]
ref #8096: use subprogressmonitor for cache updater

5 years agoref #7106 logging stacktrace with 'Opening new session in turn of a HibernateException'
Andreas Kohlbecker [Wed, 6 Mar 2019 16:42:56 +0000 (17:42 +0100)]
ref #7106 logging stacktrace with 'Opening new session in turn of a HibernateException'

5 years agominor
Andreas Müller [Wed, 6 Mar 2019 14:36:30 +0000 (15:36 +0100)]
minor

5 years agocleanup
Andreas Müller [Wed, 6 Mar 2019 13:38:07 +0000 (14:38 +0100)]
cleanup

5 years agoFix default term move position
Patrick Plitzner [Wed, 6 Mar 2019 13:54:07 +0000 (14:54 +0100)]
Fix default term move position

5 years agoset FeatureTest preliminary to ignore
Andreas Müller [Wed, 6 Mar 2019 13:05:10 +0000 (14:05 +0100)]
set FeatureTest preliminary to ignore

5 years agoref #8162 move FeatureTree and FeatureNode to term package
Andreas Müller [Wed, 6 Mar 2019 12:16:20 +0000 (13:16 +0100)]
ref #8162 move FeatureTree and FeatureNode to term package

5 years agoref #8162 missing adaption for moving of OriginalSourceBase
Andreas Müller [Wed, 6 Mar 2019 11:57:47 +0000 (12:57 +0100)]
ref #8162 missing adaption for moving of OriginalSourceBase

5 years agoref #8162 move OriginalSourceXXX to reference package
Andreas Müller [Tue, 5 Mar 2019 23:35:44 +0000 (00:35 +0100)]
ref #8162 move OriginalSourceXXX to reference package

5 years agoref #8162 move OriginalSourceXXX to reference package
Andreas Müller [Tue, 5 Mar 2019 23:28:56 +0000 (00:28 +0100)]
ref #8162 move OriginalSourceXXX to reference package

5 years agoref #8162 move term related classes from persistence(.dao.)common to .term
Andreas Müller [Tue, 5 Mar 2019 16:16:26 +0000 (17:16 +0100)]
ref #8162 move term related classes from persistence(.dao.)common to .term

5 years agoref #6794 adapt FeatureTreeController property path to new FeatureNode structure
Andreas Müller [Tue, 5 Mar 2019 15:54:49 +0000 (16:54 +0100)]
ref #6794 adapt FeatureTreeController property path to new FeatureNode structure

5 years agoref #8096: termservice adapted
Katja Luther [Tue, 5 Mar 2019 13:41:42 +0000 (14:41 +0100)]
ref #8096: termservice adapted

5 years agoref #8096: delete old cache updater and adapt cache updater to moved terms
Katja Luther [Tue, 5 Mar 2019 13:26:11 +0000 (14:26 +0100)]
ref #8096: delete old cache updater and adapt cache updater to moved terms

5 years agoref #8096: move cache updater and service methods return updateResult -continue
Katja Luther [Tue, 5 Mar 2019 12:59:44 +0000 (13:59 +0100)]
ref #8096: move cache updater and service methods return updateResult -continue

5 years agoref #8096: move cache updater and service methods return updateResult
Katja Luther [Tue, 5 Mar 2019 12:52:35 +0000 (13:52 +0100)]
ref #8096: move cache updater and service methods return updateResult

5 years agoref #8162 update to model cache
Andreas Müller [Tue, 5 Mar 2019 10:25:30 +0000 (11:25 +0100)]
ref #8162 update to model cache

5 years agoref #8162 updates to test data in further metadata
Andreas Müller [Tue, 5 Mar 2019 10:25:09 +0000 (11:25 +0100)]
ref #8162 updates to test data in further metadata

5 years agoref #8162 updates to hibernate.cfg.xml
Andreas Müller [Tue, 5 Mar 2019 10:21:57 +0000 (11:21 +0100)]
ref #8162 updates to hibernate.cfg.xml

5 years agominor changes in CdmModelCacher
Andreas Müller [Tue, 5 Mar 2019 10:20:49 +0000 (11:20 +0100)]
minor changes in CdmModelCacher

5 years agoref #8162 adapt cdmlip to new term package structure
Andreas Müller [Mon, 4 Mar 2019 23:19:37 +0000 (00:19 +0100)]
ref #8162 adapt cdmlip to new term package structure

5 years agoref #6794 deproxy term of feature node
Patrick Plitzner [Mon, 4 Mar 2019 14:33:51 +0000 (15:33 +0100)]
ref #6794 deproxy term of feature node

5 years agoref #6794 fix termType settings in deleteTerms test and clean it up
Andreas Müller [Mon, 4 Mar 2019 12:50:30 +0000 (13:50 +0100)]
ref #6794   fix termType settings in deleteTerms test and clean it up

5 years agoref #6794 fix early setting of termType during term loading
Andreas Müller [Mon, 4 Mar 2019 12:21:25 +0000 (13:21 +0100)]
ref #6794   fix early setting of termType during term loading

5 years agofix CategoricalDataTest
Andreas Müller [Mon, 4 Mar 2019 12:19:37 +0000 (13:19 +0100)]
fix CategoricalDataTest

5 years agocleanup
Andreas Müller [Mon, 4 Mar 2019 12:19:10 +0000 (13:19 +0100)]
cleanup

5 years agoref #6794 Add termType check to DefinedTermBase and TermVocabulary
Patrick Plitzner [Mon, 4 Mar 2019 07:49:27 +0000 (08:49 +0100)]
ref #6794 Add termType check to DefinedTermBase and TermVocabulary

5 years agofixing strange error logging in TestingTermInitializer and throwing RuntineException...
Andreas Kohlbecker [Fri, 1 Mar 2019 19:29:12 +0000 (20:29 +0100)]
fixing strange error logging in TestingTermInitializer and throwing RuntineException since error is unrecoverable

5 years agomoving kindOfUnitTerms from cdm-vaadin:TermsDataSet-ui-registration-with_auditing_inf...
Andreas Kohlbecker [Fri, 1 Mar 2019 19:27:18 +0000 (20:27 +0100)]
moving kindOfUnitTerms from cdm-vaadin:TermsDataSet-ui-registration-with_auditing_info.xml to edit-test:TermsDataSet-with_auditing_info.xml

5 years agoref #6794 Add generics to FeatureNode and FeatureTree
Patrick Plitzner [Fri, 1 Mar 2019 15:15:02 +0000 (16:15 +0100)]
ref #6794 Add generics to FeatureNode and FeatureTree

5 years agominor
Patrick Plitzner [Fri, 1 Mar 2019 12:43:28 +0000 (13:43 +0100)]
minor

5 years agofix #615 removing unused sun maven repo
Andreas Kohlbecker [Fri, 1 Mar 2019 10:11:04 +0000 (11:11 +0100)]
fix #615 removing unused sun maven repo

5 years agoref #6794 Fix termType comparison
Patrick Plitzner [Fri, 1 Mar 2019 09:26:40 +0000 (10:26 +0100)]
ref #6794 Fix termType comparison

5 years agoFix potential NPE
Patrick Plitzner [Thu, 28 Feb 2019 15:56:15 +0000 (16:56 +0100)]
Fix potential NPE

5 years agoref #8153 Fix feature tree type check for distinct features
Patrick Plitzner [Thu, 28 Feb 2019 15:47:13 +0000 (16:47 +0100)]
ref #8153 Fix feature tree type check for distinct features

5 years agoref #8153 Further adapt cdmlib to model changes
Patrick Plitzner [Thu, 28 Feb 2019 15:09:19 +0000 (16:09 +0100)]
ref #8153 Further adapt cdmlib to model changes

  - Adjust feature node service to model changes

5 years agoref #8153 Adapt cdmlib to model changes
Patrick Plitzner [Thu, 28 Feb 2019 12:34:55 +0000 (13:34 +0100)]
ref #8153 Adapt cdmlib to model changes

  - Add constructor for creating a FeatureNode for a given termType
  - Adjust feature node service to model changes

5 years agoref #8017 cleanup
Andreas Müller [Thu, 28 Feb 2019 12:22:56 +0000 (13:22 +0100)]
ref #8017 cleanup

5 years agoRevert "ref #8124: adapt NaturalLanguageGenerator to usage in nameFacts"
Katja Luther [Thu, 28 Feb 2019 11:54:12 +0000 (12:54 +0100)]
Revert "ref #8124: adapt NaturalLanguageGenerator to usage in nameFacts"

This reverts commit c495b39b090fa3af00d870a8ba8171d7300e66a4.

5 years agoref #8124: add new TaxonNameDescriptionDefaultCacheStrategy
Katja Luther [Thu, 28 Feb 2019 11:43:53 +0000 (12:43 +0100)]
ref #8124: add new TaxonNameDescriptionDefaultCacheStrategy

5 years agoref #8124: adapt NaturalLanguageGenerator to usage in nameFacts
Katja Luther [Thu, 28 Feb 2019 10:49:47 +0000 (11:49 +0100)]
ref #8124: adapt NaturalLanguageGenerator to usage in nameFacts

5 years agoref #7514 adapt MAN symbol to portal tests (cont.)
Andreas Müller [Thu, 28 Feb 2019 08:18:15 +0000 (09:18 +0100)]
ref #7514 adapt MAN symbol to portal tests (cont.)

5 years agoref #7514 adapt MAN symbol to portal tests
Andreas Müller [Thu, 28 Feb 2019 08:13:19 +0000 (09:13 +0100)]
ref #7514 adapt MAN symbol to portal tests

5 years agoref #6618 , ref #8012, ref #3853 add TermType.Character
Andreas Müller [Wed, 27 Feb 2019 15:31:33 +0000 (16:31 +0100)]
ref #6618 , ref #8012, ref #3853 add TermType.Character

5 years agocleanup and MultilanguageText.add(Language, String) added
Andreas Müller [Wed, 27 Feb 2019 14:23:38 +0000 (15:23 +0100)]
cleanup and MultilanguageText.add(Language, String) added

5 years agoref #8146 Add service method for UuidAndTitleCache by termType for trees
Patrick Plitzner [Wed, 27 Feb 2019 13:46:12 +0000 (14:46 +0100)]
ref #8146 Add service method for UuidAndTitleCache by termType for trees

5 years agoref #8146 Refactor service method
Patrick Plitzner [Wed, 27 Feb 2019 13:44:47 +0000 (14:44 +0100)]
ref #8146 Refactor service method

5 years agoref #8146 Adapt getEmptyDefinedTermBase() for new term types
Patrick Plitzner [Wed, 27 Feb 2019 13:21:45 +0000 (14:21 +0100)]
ref #8146 Adapt getEmptyDefinedTermBase() for new term types

5 years agoref #8142 Add getter/setter for plural
Patrick Plitzner [Wed, 27 Feb 2019 08:04:58 +0000 (09:04 +0100)]
ref #8142 Add getter/setter for plural

5 years agoremoving unused private fiels in H2DatabaseType
Andreas Kohlbecker [Tue, 26 Feb 2019 18:45:53 +0000 (19:45 +0100)]
removing unused private fiels in H2DatabaseType

5 years agocleanup
Andreas Müller [Tue, 26 Feb 2019 15:59:39 +0000 (16:59 +0100)]
cleanup

5 years agoref #7514 update misapplied name symbols & add tests
Andreas Müller [Tue, 26 Feb 2019 15:56:49 +0000 (16:56 +0100)]
ref #7514 update misapplied name symbols & add tests

5 years agoMerge branch 'develop' into termSearch origin/termSearch
Patrick Plitzner [Tue, 26 Feb 2019 13:57:01 +0000 (14:57 +0100)]
Merge branch 'develop' into termSearch

5 years agoupdated model cache
Katja Luther [Tue, 26 Feb 2019 12:25:47 +0000 (13:25 +0100)]
updated model cache

5 years agominor
Andreas Müller [Mon, 25 Feb 2019 23:32:42 +0000 (00:32 +0100)]
minor

5 years agofix some compilation issues with generics
Andreas Müller [Mon, 25 Feb 2019 23:22:00 +0000 (00:22 +0100)]
fix some compilation issues with generics

5 years agocleanup
Andreas Müller [Mon, 25 Feb 2019 23:13:22 +0000 (00:13 +0100)]
cleanup

5 years agocleanup
Andreas Müller [Mon, 25 Feb 2019 23:08:11 +0000 (00:08 +0100)]
cleanup

5 years agodoc
Andreas Müller [Mon, 25 Feb 2019 21:54:37 +0000 (22:54 +0100)]
doc

5 years agocleanup
Andreas Müller [Mon, 25 Feb 2019 20:13:18 +0000 (21:13 +0100)]
cleanup

5 years agoref #8118 update mysql driver path in code and tests
Andreas Müller [Mon, 25 Feb 2019 20:12:55 +0000 (21:12 +0100)]
ref #8118 update mysql driver path in code and tests

5 years agorename cdm 5.5 update script package
Andreas Müller [Mon, 25 Feb 2019 19:42:53 +0000 (20:42 +0100)]
rename cdm 5.5 update script package

5 years agoupdate remote-web-app test DB to 5.0
Andreas Müller [Mon, 25 Feb 2019 19:41:06 +0000 (20:41 +0100)]
update remote-web-app test DB to 5.0

5 years agoref #8128 first implementation to support EnumSet hibernate user types (not yet ready)
Andreas Müller [Mon, 25 Feb 2019 19:39:56 +0000 (20:39 +0100)]
ref #8128 first implementation to support EnumSet hibernate user types (not yet ready)

5 years agoref #8017 add isLectotype to helper class
Andreas Müller [Mon, 25 Feb 2019 19:38:30 +0000 (20:38 +0100)]
ref #8017 add isLectotype to helper class

5 years agoref #8120 add structure- and property modifier
Andreas Müller [Mon, 25 Feb 2019 19:37:06 +0000 (20:37 +0100)]
ref #8120 add structure- and property modifier

5 years agocleanup
Andreas Müller [Mon, 25 Feb 2019 19:35:59 +0000 (20:35 +0100)]
cleanup

5 years agoref #8142 update script for Representation.plural and ref #8017 TypeDesignation.sources
Andreas Müller [Mon, 25 Feb 2019 19:33:46 +0000 (20:33 +0100)]
ref #8142 update script for Representation.plural and ref #8017 TypeDesignation.sources

5 years agoref #8142 add plural to representations
Andreas Müller [Mon, 25 Feb 2019 19:31:37 +0000 (20:31 +0100)]
ref #8142 add plural to representations

5 years agoref #8019 add orthography and etymology as name features
Andreas Müller [Mon, 25 Feb 2019 13:39:54 +0000 (14:39 +0100)]
ref #8019 add orthography and etymology as name features

5 years agofix #8140 update "lectotype" type designation status
Andreas Müller [Mon, 25 Feb 2019 13:39:03 +0000 (14:39 +0100)]
fix #8140 update "lectotype" type designation status

5 years agofix #8139 add test for valid lectotype source
Andreas Müller [Mon, 25 Feb 2019 13:14:42 +0000 (14:14 +0100)]
fix #8139 add test for valid lectotype source

5 years agoref #7470 some javadoc
Andreas Müller [Fri, 22 Feb 2019 16:35:25 +0000 (17:35 +0100)]
ref #7470 some javadoc