Andreas Kohlbecker [Thu, 22 Oct 2020 14:07:03 +0000 (16:07 +0200)]
fixing compilation problem stemming from outdated javadoc @link references
Andreas Kohlbecker [Thu, 22 Oct 2020 14:05:42 +0000 (16:05 +0200)]
updating maven-antrun-plugin configuration to conform to version 3.0.0
Andreas Müller [Thu, 22 Oct 2020 12:31:55 +0000 (14:31 +0200)]
cleanup
Andreas Müller [Thu, 22 Oct 2020 11:40:30 +0000 (13:40 +0200)]
improve generics for TypeDesignationSetManager TypedEntityReference
Andreas Müller [Thu, 22 Oct 2020 11:39:43 +0000 (13:39 +0200)]
cleanup
Andreas Kohlbecker [Thu, 22 Oct 2020 10:14:24 +0000 (12:14 +0200)]
fix #9261 extending init strategy to avoid LIEs in TaxonController
Andreas Müller [Tue, 20 Oct 2020 16:24:08 +0000 (18:24 +0200)]
remove redmine-java-api version from parent pom
Andreas Müller [Tue, 20 Oct 2020 16:20:05 +0000 (18:20 +0200)]
remove 2 deprecated methods from ImagesUtility
Andreas Müller [Tue, 20 Oct 2020 16:19:36 +0000 (18:19 +0200)]
cleanup
Andreas Kohlbecker [Tue, 20 Oct 2020 11:08:31 +0000 (13:08 +0200)]
ref #7936 removing redmine-api dependency and unused ExternalServiceException
Andreas Kohlbecker [Tue, 20 Oct 2020 10:49:47 +0000 (12:49 +0200)]
ref #7936 full removal of redmine communication hub code
Andreas Müller [Tue, 20 Oct 2020 09:37:24 +0000 (11:37 +0200)]
archive old schema updaters (combine packages)
Andreas Kohlbecker [Mon, 19 Oct 2020 19:56:45 +0000 (21:56 +0200)]
ref #9252 adding mostSignificantIdentifier to DerivedUnitDTO
Andreas Kohlbecker [Mon, 19 Oct 2020 19:41:20 +0000 (21:41 +0200)]
ref #9252 using TypedEntityReference for DerivedUnitDTO.associatedTaxa
Andreas Müller [Mon, 19 Oct 2020 14:28:54 +0000 (16:28 +0200)]
try to remove direct dependencies (junit and log4j) from cdmlib-parent (cont.)
Andreas Müller [Mon, 19 Oct 2020 14:20:28 +0000 (16:20 +0200)]
ref #9204 update junit to 4.13.1 in cdmlib
Andreas Kohlbecker [Mon, 19 Oct 2020 14:08:15 +0000 (16:08 +0200)]
ref #9252 adding id as propery to recover lost UuidAndTitleCache property for the taxeditor
Andreas Müller [Mon, 19 Oct 2020 14:06:30 +0000 (16:06 +0200)]
try to remove direct dependencies (junit and log4j) from cdmlib-parent
Andreas Kohlbecker [Mon, 19 Oct 2020 12:09:56 +0000 (14:09 +0200)]
ref #9252 maving fieldUnitDTO creation into transactional context - fixing careless mistake
Andreas Kohlbecker [Mon, 19 Oct 2020 12:03:58 +0000 (14:03 +0200)]
ref #9252 maving fieldUnitDTO creation into transactional context
Andreas Müller [Mon, 19 Oct 2020 11:55:20 +0000 (13:55 +0200)]
try to fix failing (in suite) test (cont.)
Andreas Müller [Mon, 19 Oct 2020 11:49:33 +0000 (13:49 +0200)]
try to fix failing (in suite) test (cont.)
Andreas Müller [Mon, 19 Oct 2020 11:49:12 +0000 (13:49 +0200)]
cleanup
Andreas Müller [Mon, 19 Oct 2020 11:33:45 +0000 (13:33 +0200)]
try to fix failing (in suite) test
Andreas Müller [Mon, 19 Oct 2020 11:33:20 +0000 (13:33 +0200)]
remove some further null values from test data
Andreas Müller [Mon, 19 Oct 2020 11:32:34 +0000 (13:32 +0200)]
cleanup
Andreas Müller [Mon, 19 Oct 2020 11:15:38 +0000 (13:15 +0200)]
cleanup
Andreas Müller [Mon, 19 Oct 2020 11:13:27 +0000 (13:13 +0200)]
remove some null values from test data
Andreas Kohlbecker [Mon, 19 Oct 2020 07:55:22 +0000 (09:55 +0200)]
fix #9259 reducing fields in TermBase json serializations
Andreas Kohlbecker [Mon, 19 Oct 2020 06:27:31 +0000 (08:27 +0200)]
ref #9252 using DefinedTermBase for term fields in DTOs and TypedEdityRefernce for indentifications
Andreas Kohlbecker [Fri, 16 Oct 2020 16:01:40 +0000 (18:01 +0200)]
ref #9252 localizing kind of unit in SpecimenOrObservationBaseDTO
Andreas Kohlbecker [Fri, 16 Oct 2020 11:50:09 +0000 (13:50 +0200)]
fix #9258 using Partial for date field in FieldUnitDTO
Andreas Kohlbecker [Fri, 16 Oct 2020 10:04:31 +0000 (12:04 +0200)]
ref #8419 ref #9252 introducing specimenIdentifier field in DTO and experimental accessionNumber cleanup
Andreas Kohlbecker [Fri, 16 Oct 2020 06:58:18 +0000 (08:58 +0200)]
ref #8423 OccurrenceServiceImpl.findFieldUnitDTO() : fixing merge problem of derivate paths
Andreas Kohlbecker [Thu, 15 Oct 2020 19:34:27 +0000 (21:34 +0200)]
ref #9253 cleaning up caller of OccurrenceServiceImpl.findFieldUnitDTO(..)
Andreas Kohlbecker [Thu, 15 Oct 2020 19:26:34 +0000 (21:26 +0200)]
ref #8423 raising log level of problematic situation and code cleaning
Andreas Kohlbecker [Thu, 15 Oct 2020 15:40:04 +0000 (17:40 +0200)]
ref #8423 ref #9253, ref #9252 fixing duplicate addition of DerivedUnitDTOs
Andreas Kohlbecker [Thu, 15 Oct 2020 15:28:09 +0000 (17:28 +0200)]
ref #9252 basing SpecimenOrObservationBaseDTO on TypedEntityReference
Andreas Kohlbecker [Thu, 15 Oct 2020 13:35:02 +0000 (15:35 +0200)]
ref #9252 determinig hasTypes from actual data and fixing type probelms in methods
Andreas Kohlbecker [Thu, 15 Oct 2020 10:46:14 +0000 (12:46 +0200)]
ref #9257 comments including questions on missing filtering in the DrivedUnitDTO construction
Andreas Kohlbecker [Thu, 15 Oct 2020 10:26:12 +0000 (12:26 +0200)]
ref #9252 ref #9257 exposing SpecimenOrObservationType filter to factory method and better flag handling
Katja Luther [Thu, 15 Oct 2020 09:59:31 +0000 (11:59 +0200)]
ref #9256: fix bug in nametypedesignation string
Andreas Kohlbecker [Thu, 15 Oct 2020 09:40:17 +0000 (11:40 +0200)]
fix #9254 removing restriction to DerivedUnit in conmroller method
Andreas Kohlbecker [Thu, 15 Oct 2020 09:25:35 +0000 (11:25 +0200)]
ref #9253 todo comment
Andreas Kohlbecker [Thu, 15 Oct 2020 06:52:47 +0000 (08:52 +0200)]
ref #9252 adapting service method no new DTO name
Andreas Kohlbecker [Wed, 14 Oct 2020 12:46:09 +0000 (14:46 +0200)]
ref #9252 harmonizing SpecimenOrOberservationBase related DTOs - renaming classes
Andreas Kohlbecker [Wed, 14 Oct 2020 12:14:09 +0000 (14:14 +0200)]
ref #9252 harmonizing SpecimenOrOberservationBase related DTOs
Andreas Kohlbecker [Wed, 14 Oct 2020 12:04:48 +0000 (14:04 +0200)]
ref #9252 harmonizing SpecimenOrOberservationBase related DTOs
Andreas Kohlbecker [Tue, 13 Oct 2020 15:56:01 +0000 (17:56 +0200)]
ref #9249 ref #3978 harmonization of FieldUnit and Derivate DTOs:
- using pointDTO in all webservices
- cleaning up FieldUnitDTO and DerivateDTO
- using CollectionDTO on DerivateDTO
Katja Luther [Tue, 13 Oct 2020 12:16:01 +0000 (14:16 +0200)]
ref #8774: smaller changes in termDtos
Andreas Kohlbecker [Tue, 13 Oct 2020 10:32:50 +0000 (12:32 +0200)]
TypedEntityReference reducing factory methods to one
Andreas Kohlbecker [Tue, 13 Oct 2020 10:23:44 +0000 (12:23 +0200)]
ref #3978 PointBeanProcessor: sexagesimalstring without geospacial reference system
Katja Luther [Mon, 12 Oct 2020 13:18:16 +0000 (15:18 +0200)]
fix test - last commit
Katja Luther [Mon, 12 Oct 2020 13:02:13 +0000 (15:02 +0200)]
fix test - last commit
Katja Luther [Mon, 12 Oct 2020 12:40:41 +0000 (14:40 +0200)]
revert change in TermNode
Katja Luther [Mon, 12 Oct 2020 12:37:58 +0000 (14:37 +0200)]
fix test -continue
Katja Luther [Mon, 12 Oct 2020 12:21:32 +0000 (14:21 +0200)]
fix test -continue
Katja Luther [Mon, 12 Oct 2020 12:05:38 +0000 (14:05 +0200)]
fix test -continue
Katja Luther [Mon, 12 Oct 2020 11:46:48 +0000 (13:46 +0200)]
fix test -continue
Katja Luther [Mon, 12 Oct 2020 11:30:43 +0000 (13:30 +0200)]
fix test
Katja Luther [Mon, 12 Oct 2020 11:16:51 +0000 (13:16 +0200)]
fix test
Katja Luther [Mon, 12 Oct 2020 09:04:08 +0000 (11:04 +0200)]
ref #8774: dto and service adaptions to use dtos for term tree editors
Andreas Kohlbecker [Fri, 9 Oct 2020 07:47:45 +0000 (09:47 +0200)]
ref #9238 removing quick fix allied in
4d6b5667 and adapting config for json serialization
Andreas Kohlbecker [Thu, 8 Oct 2020 16:42:54 +0000 (18:42 +0200)]
ref #9238 extending SpecimenTypeDesignationDTO with more fields and associated DTOs, introducing ReferenceDTO, supressing unwanted and dangerous fields of RegistrationDTO
Andreas Kohlbecker [Wed, 7 Oct 2020 12:57:28 +0000 (14:57 +0200)]
ref #9238 replacing entitiy by SpecimenTypeDesignationDTO in DerivateDTO
Andreas Müller [Wed, 7 Oct 2020 09:32:50 +0000 (11:32 +0200)]
updated cdmTest.h2.db (not sure anymore why this was necessary)
Andreas Kohlbecker [Fri, 2 Oct 2020 13:27:37 +0000 (15:27 +0200)]
ref #9238 quick fix at least for the test data in reference_int Glenodinium apiculatum
Katja Luther [Fri, 25 Sep 2020 13:03:53 +0000 (15:03 +0200)]
cdmLight: fix missing name of toRelationships
Andreas Müller [Thu, 24 Sep 2020 13:01:37 +0000 (15:01 +0200)]
ref #9124 fix incorrect Altituded recommended measurement unit update script
Andreas Müller [Thu, 24 Sep 2020 11:54:25 +0000 (13:54 +0200)]
cleanup
Andreas Kohlbecker [Thu, 24 Sep 2020 10:33:39 +0000 (12:33 +0200)]
ref #9225 adapting TaxonGraphHibernateListener processor and test to changed mapping of TaxonName.nomenclaturalSource
Andreas Müller [Thu, 24 Sep 2020 08:28:44 +0000 (10:28 +0200)]
ref #9225 fix setNomenclaturalSource bidirectional setting
Andreas Kohlbecker [Tue, 22 Sep 2020 16:11:50 +0000 (18:11 +0200)]
ref #6356 using TaxonNodeSortMode.RankAndAlphabeticalOrder as default in all contollers
Andreas Kohlbecker [Tue, 22 Sep 2020 15:01:33 +0000 (17:01 +0200)]
AutoPropertyInitializer with more type savety
Andreas Müller [Tue, 22 Sep 2020 14:28:13 +0000 (16:28 +0200)]
cleanup and improve data and docu for BeanInitializerIntegrationTest.testInitializeManyToOneProperty
Andreas Müller [Tue, 22 Sep 2020 14:26:56 +0000 (16:26 +0200)]
cleanup
Andreas Müller [Tue, 22 Sep 2020 13:55:29 +0000 (15:55 +0200)]
ref #9225 fix AdvancedBeanInitializer test
Andreas Müller [Tue, 22 Sep 2020 10:35:24 +0000 (12:35 +0200)]
ref #6581 , ref #9225 cleanup TaxonName from nomenclaturalSource handling
Andreas Müller [Tue, 22 Sep 2020 10:33:55 +0000 (12:33 +0200)]
cleanup
Andreas Müller [Tue, 22 Sep 2020 10:33:10 +0000 (12:33 +0200)]
ref #9225 fix ValidationTest / 3rd Level duplicate validation for taxon names
Andreas Müller [Mon, 21 Sep 2020 14:58:59 +0000 (16:58 +0200)]
ref #9225 !! PRELIMINARY also ValidationTest
Andreas Müller [Mon, 21 Sep 2020 14:46:19 +0000 (16:46 +0200)]
ref #9225 !! PRELIMINARY ignore failing tests
Andreas Müller [Mon, 21 Sep 2020 14:18:44 +0000 (16:18 +0200)]
cleanup
Andreas Müller [Mon, 21 Sep 2020 14:17:36 +0000 (16:17 +0200)]
ref #9225 revert direction of TaxonName.nomenclaturalSource -> NomenclaturalSource.sourcedName mapping and some related issues
Andreas Müller [Thu, 17 Sep 2020 13:11:21 +0000 (15:11 +0200)]
ref #6589 add ProtologMover (not yet ready)
Andreas Müller [Wed, 16 Sep 2020 12:13:31 +0000 (14:13 +0200)]
cleanup
Andreas Müller [Wed, 16 Sep 2020 09:19:04 +0000 (11:19 +0200)]
fix logging in StructuredDescriptionAggregationTest
Andreas Kohlbecker [Wed, 16 Sep 2020 13:09:43 +0000 (15:09 +0200)]
adding more explanation to test assertion
Andreas Müller [Wed, 16 Sep 2020 07:58:47 +0000 (09:58 +0200)]
ref #9225 update cached model
Andreas Kohlbecker [Tue, 15 Sep 2020 20:20:09 +0000 (22:20 +0200)]
fix #9223 TaxonGraphBeforeTransactionCompleteProcess using NoemclaturalSource to detect nomRef changes
Andreas Müller [Tue, 15 Sep 2020 09:03:46 +0000 (11:03 +0200)]
Revert "temporarily unignore failing test"
This reverts commit
e488332815bad4f7e3de2844f22cf8e36b82314c.
Andreas Müller [Tue, 15 Sep 2020 09:02:48 +0000 (11:02 +0200)]
temporarily unignore failing test
Andreas Müller [Tue, 15 Sep 2020 07:33:35 +0000 (09:33 +0200)]
ref #9225 implement NomenclaturalSource (cleanup and update script)
Andreas Müller [Tue, 15 Sep 2020 07:25:22 +0000 (09:25 +0200)]
cleanup
Andreas Müller [Tue, 15 Sep 2020 07:23:41 +0000 (09:23 +0200)]
deprecate printDataSetWithNull
Andreas Müller [Mon, 14 Sep 2020 21:02:24 +0000 (23:02 +0200)]
cleanup
Andreas Müller [Mon, 14 Sep 2020 20:42:36 +0000 (22:42 +0200)]
ref #9225 implement NomenclaturalSource
Andreas Müller [Mon, 14 Sep 2020 12:26:05 +0000 (14:26 +0200)]
cleanup
Andreas Müller [Thu, 10 Sep 2020 15:23:48 +0000 (17:23 +0200)]
ref #6581 add listener to TaxonName.nomenclaturalSource (cont.)
Andreas Müller [Thu, 10 Sep 2020 15:23:16 +0000 (17:23 +0200)]
ref #3547 remove created and updated in CdmEntityDaoBaseTest