cdmlib.git
8 years agoShorten metaValues for @AnyMetaDef CdmBase #3701
Andreas Müller [Mon, 25 Apr 2016 20:57:08 +0000 (22:57 +0200)]
Shorten metaValues for @AnyMetaDef CdmBase  #3701

8 years agoUpdate script for upading xxxObj_type #3701
Andreas Müller [Mon, 25 Apr 2016 20:51:12 +0000 (22:51 +0200)]
Update script for upading xxxObj_type  #3701

8 years agojavadoc
Andreas Müller [Mon, 25 Apr 2016 20:50:06 +0000 (22:50 +0200)]
javadoc

8 years agoAdd TypeDesignations to @AnyMetaData #3701
Andreas Müller [Mon, 25 Apr 2016 20:29:20 +0000 (22:29 +0200)]
Add TypeDesignations to @AnyMetaData  #3701

8 years agoClean up DescriptionElementSource.java
Andreas Müller [Mon, 25 Apr 2016 14:06:47 +0000 (16:06 +0200)]
Clean up DescriptionElementSource.java

8 years agoClean up IdentifiableSource java file
Andreas Müller [Mon, 25 Apr 2016 14:05:40 +0000 (16:05 +0200)]
Clean up IdentifiableSource java file

8 years agoAdd missing @AnyMetaDef metaValues #3701
Andreas Müller [Mon, 25 Apr 2016 14:03:17 +0000 (16:03 +0200)]
Add missing @AnyMetaDef metaValues  #3701

8 years agoAdd symbol and reverseSymbol do DefinedTermBase #5734
Andreas Müller [Fri, 22 Apr 2016 15:11:04 +0000 (17:11 +0200)]
Add symbol and reverseSymbol do DefinedTermBase  #5734

8 years agoAdapt table and column names to hibernate 5 naming strategy #5369
Andreas Müller [Tue, 19 Apr 2016 09:44:10 +0000 (11:44 +0200)]
Adapt table and column names to hibernate 5 naming strategy #5369

... and some other changes to table/attribute names

8 years agoRemove Autoincrement on AuditEvent.revisionnumber on MySQL #5718
Andreas Müller [Mon, 18 Apr 2016 12:10:50 +0000 (14:10 +0200)]
Remove Autoincrement on AuditEvent.revisionnumber on MySQL #5718

 * Not yet tested for H2 and PostGreSQL

8 years agoFix Jaxb for SpecimenOrObservationBase #5606
Andreas Müller [Mon, 18 Apr 2016 10:41:49 +0000 (12:41 +0200)]
Fix Jaxb for SpecimenOrObservationBase #5606

8 years agoAdd secundum micro reference to TaxonBase #5717
Andreas Müller [Mon, 18 Apr 2016 10:41:33 +0000 (12:41 +0200)]
Add secundum micro reference to TaxonBase #5717

8 years agoAdd secMicroReference #5717
Andreas Müller [Sat, 16 Apr 2016 00:36:59 +0000 (02:36 +0200)]
Add secMicroReference  #5717

8 years agoAdd preferred stable URI to SpecimenOrObservation #5606
Andreas Müller [Sat, 16 Apr 2016 00:13:31 +0000 (02:13 +0200)]
Add preferred stable URI to SpecimenOrObservation  #5606

8 years agoAdd base structure for model update to 4.0
Andreas Müller [Sat, 16 Apr 2016 00:04:52 +0000 (02:04 +0200)]
Add base structure for model update to 4.0

8 years agoFix sort order for nom illeg with date #3338
Andreas Müller [Tue, 26 Apr 2016 20:49:00 +0000 (22:49 +0200)]
Fix sort order for nom illeg with date #3338

8 years agoUnignore IPNI Service
Andreas Müller [Fri, 22 Apr 2016 11:43:03 +0000 (13:43 +0200)]
Unignore IPNI Service

8 years agoInclude nom. illeg. in homotypic group ordering #3338
Andreas Müller [Fri, 22 Apr 2016 11:34:24 +0000 (13:34 +0200)]
Include nom. illeg. in homotypic group ordering #3338

8 years agosmall changes for moving taxonnodes
Katja Luther [Fri, 22 Apr 2016 09:51:54 +0000 (11:51 +0200)]
small changes for moving taxonnodes

8 years agoRename TaxonNodeDao to TaxonNodeDto
Andreas Müller [Fri, 22 Apr 2016 08:36:34 +0000 (10:36 +0200)]
Rename TaxonNodeDao to TaxonNodeDto

8 years agoharmonizing OrderHintPresets
Andreas Kohlbecker [Thu, 21 Apr 2016 15:26:57 +0000 (17:26 +0200)]
harmonizing OrderHintPresets

8 years agoremoving unused old swagger-ui files
Andreas Kohlbecker [Thu, 21 Apr 2016 15:23:43 +0000 (17:23 +0200)]
removing unused old swagger-ui files

8 years ago#5730 base url detection fixed
Andreas Kohlbecker [Thu, 21 Apr 2016 13:44:10 +0000 (15:44 +0200)]
#5730 base url detection fixed

8 years ago#5482 web services now support different orderBy modes
Andreas Kohlbecker [Tue, 19 Apr 2016 10:49:39 +0000 (12:49 +0200)]
#5482 web services now support different orderBy modes

8 years agorevert a small change in taxonservice
Katja Luther [Tue, 19 Apr 2016 10:06:28 +0000 (12:06 +0200)]
revert a small change in taxonservice

8 years agoimprove delete configurator for taxa and synonyms
Katja Luther [Tue, 19 Apr 2016 10:03:42 +0000 (12:03 +0200)]
improve delete configurator for taxa and synonyms

8 years agofix CoordinateConverterTest #5716
Andreas Müller [Sat, 16 Apr 2016 00:51:43 +0000 (02:51 +0200)]
fix CoordinateConverterTest #5716

8 years agoLatest changes to CubaDistributionComposer
Andreas Müller [Fri, 15 Apr 2016 23:21:24 +0000 (01:21 +0200)]
Latest changes to CubaDistributionComposer

8 years agoAllow parsing of accent acute for coordinates #5716
Andreas Müller [Fri, 15 Apr 2016 23:09:03 +0000 (01:09 +0200)]
Allow parsing of accent acute for coordinates  #5716

8 years agominor
Katja Luther [Wed, 13 Apr 2016 12:12:59 +0000 (14:12 +0200)]
minor

8 years agominor
Katja Luther [Wed, 13 Apr 2016 12:08:57 +0000 (14:08 +0200)]
minor

8 years agoAdd missing type information to UuidAndTitleCache object for search
Patrick Plitzner [Wed, 13 Apr 2016 12:04:26 +0000 (14:04 +0200)]
Add missing type information to UuidAndTitleCache object for search
results #5700
 - fixes NPE

8 years agofix #5672
Katja Luther [Wed, 13 Apr 2016 11:42:50 +0000 (13:42 +0200)]
fix #5672

8 years agofix #5669
Katja Luther [Tue, 12 Apr 2016 08:51:22 +0000 (10:51 +0200)]
fix #5669

8 years agoAdd test for condensed distribution string #5682
Andreas Müller [Thu, 7 Apr 2016 11:24:44 +0000 (13:24 +0200)]
Add test for condensed distribution string  #5682

8 years agoDeproxy status in Condensed String #5682
Andreas Müller [Thu, 7 Apr 2016 11:21:18 +0000 (13:21 +0200)]
Deproxy status in Condensed String #5682

8 years agoRemove compile error
Andreas Müller [Thu, 7 Apr 2016 08:51:58 +0000 (10:51 +0200)]
Remove compile error

8 years agoImprove condensed string for Cuba (still not yet ready) #5682
Andreas Müller [Thu, 7 Apr 2016 08:49:05 +0000 (10:49 +0200)]
Improve condensed string for Cuba (still not yet ready) #5682

8 years agominor
Katja Luther [Thu, 7 Apr 2016 08:00:23 +0000 (10:00 +0200)]
minor

8 years agominot
Katja Luther [Thu, 7 Apr 2016 07:45:24 +0000 (09:45 +0200)]
minot

8 years agoMerge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Thu, 7 Apr 2016 07:12:28 +0000 (09:12 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

8 years agosmaller changes for fauna europaea import and csvNameExport
Katja Luther [Thu, 7 Apr 2016 07:11:51 +0000 (09:11 +0200)]
smaller changes for fauna europaea import and csvNameExport

8 years agoFix NPE in FloraCubaCondensedDistributionComposer #5682
Andreas Müller [Wed, 6 Apr 2016 12:59:35 +0000 (14:59 +0200)]
Fix NPE in FloraCubaCondensedDistributionComposer #5682

8 years agofix possibility to connect with mgd server
Katja Luther [Wed, 6 Apr 2016 12:17:50 +0000 (14:17 +0200)]
fix possibility to connect with mgd server

8 years agoAdd status for doubtfully native: reported in error #5682
Andreas Müller [Tue, 5 Apr 2016 11:26:00 +0000 (13:26 +0200)]
Add status for doubtfully native: reported in error #5682

8 years agoFirst implementatio for Cuban Condensed Distribution String #5682
Andreas Müller [Tue, 5 Apr 2016 10:32:16 +0000 (12:32 +0200)]
First implementatio for Cuban Condensed Distribution String  #5682

8 years agoSymbols for Cuba Condensed Distribution String added
Andreas Müller [Tue, 5 Apr 2016 09:49:03 +0000 (11:49 +0200)]
Symbols for Cuba Condensed Distribution String added

8 years agoCondensedDistributionCompose for FloraCuba
Andreas Kohlbecker [Tue, 5 Apr 2016 08:55:50 +0000 (10:55 +0200)]
CondensedDistributionCompose for FloraCuba

8 years agoCondensedDistributionCompose for FloraCuba
Andreas Kohlbecker [Tue, 5 Apr 2016 08:55:42 +0000 (10:55 +0200)]
CondensedDistributionCompose for FloraCuba

8 years agoFix order for areas #5677
Andreas Müller [Tue, 5 Apr 2016 08:53:06 +0000 (10:53 +0200)]
Fix order for areas #5677

8 years agoFix potential NPE
Patrick Plitzner [Tue, 5 Apr 2016 08:22:24 +0000 (10:22 +0200)]
Fix potential NPE

8 years agoFix failing test
Patrick Plitzner [Tue, 5 Apr 2016 08:19:05 +0000 (10:19 +0200)]
Fix failing test

8 years agoFix test for factual data cache strategy #5547
Andreas Müller [Tue, 5 Apr 2016 08:06:18 +0000 (10:06 +0200)]
Fix test for factual data cache strategy #5547

8 years agoFix label for taxon description #5547
Patrick Plitzner [Mon, 4 Apr 2016 15:21:50 +0000 (17:21 +0200)]
Fix label for taxon description #5547

8 years agoReload type designation before deleting it to avoid caching conflicts.
Patrick Plitzner [Mon, 4 Apr 2016 04:27:22 +0000 (06:27 +0200)]
Reload type designation before deleting it to avoid caching conflicts.

8 years ago#5679 catching and ignoring LIEs during the attempt to clean up NULL items in sets
Andreas Kohlbecker [Tue, 5 Apr 2016 06:13:50 +0000 (08:13 +0200)]
#5679 catching and ignoring LIEs during the attempt to clean up NULL items in sets

8 years agofixing LIE in webservice: taxonNode.sortIndex needs to be @Transient
Andreas Kohlbecker [Mon, 4 Apr 2016 14:04:34 +0000 (16:04 +0200)]
fixing LIE in webservice: taxonNode.sortIndex needs to be @Transient

8 years agoremoving deprecated test class
Andreas Kohlbecker [Mon, 4 Apr 2016 12:34:08 +0000 (14:34 +0200)]
removing deprecated test class

8 years agoPreliminary ignore IPNI tests
Andreas Müller [Mon, 4 Apr 2016 12:14:48 +0000 (14:14 +0200)]
Preliminary ignore IPNI tests

8 years ago#5677 adding request paramter for DistributionOrder
Andreas Kohlbecker [Mon, 4 Apr 2016 11:53:20 +0000 (13:53 +0200)]
#5677 adding request paramter for DistributionOrder

8 years agoremoving depreceted controller methods
Andreas Kohlbecker [Mon, 4 Apr 2016 11:52:42 +0000 (13:52 +0200)]
removing depreceted controller methods

8 years agoFix compilation error for Distribution comparator #5677
Andreas Müller [Mon, 4 Apr 2016 11:47:51 +0000 (13:47 +0200)]
Fix compilation error for Distribution comparator #5677

8 years agoUpdate javadoc and illegitimate status for
Andreas Müller [Mon, 4 Apr 2016 11:42:25 +0000 (13:42 +0200)]
Update javadoc and illegitimate status for
NomenclaturalStatusType.CONS_DESIG #5662

8 years agoMinor change in order
Andreas Müller [Mon, 4 Apr 2016 11:40:32 +0000 (13:40 +0200)]
Minor change in order

8 years agoImplement natural ordering for distributions in data portal #5677
Andreas Müller [Mon, 4 Apr 2016 11:03:49 +0000 (13:03 +0200)]
Implement natural ordering for distributions in data portal #5677

8 years agoUnignore IPNI Service test again
Andreas Müller [Thu, 31 Mar 2016 14:46:34 +0000 (16:46 +0200)]
Unignore IPNI Service test again

8 years agofix move taxonnode and remove null values from childrenlists in several places
Katja Luther [Mon, 4 Apr 2016 08:12:05 +0000 (10:12 +0200)]
fix move taxonnode and remove null values from childrenlists in several places

8 years agoSet IPNI Service Test preliminary to ignore
Andreas Müller [Thu, 31 Mar 2016 14:45:24 +0000 (16:45 +0200)]
Set IPNI Service Test preliminary to ignore

8 years agoRemove nomenclatural status type ined. as it is a duplicate for nom.
Andreas Müller [Thu, 31 Mar 2016 09:40:34 +0000 (11:40 +0200)]
Remove nomenclatural status type ined. as it is a duplicate for nom.
provis.  (related to Cuba #5443)

8 years agoAdded nom. cons. des. status #5662
Andreas Müller [Thu, 31 Mar 2016 09:26:31 +0000 (11:26 +0200)]
Added nom. cons. des. status #5662

8 years agoAdd nom. cons. des. to parser #5662
Andreas Müller [Thu, 31 Mar 2016 09:23:25 +0000 (11:23 +0200)]
Add nom. cons. des. to parser #5662

8 years agoAdd orth. rej. to parsing #5649 and clean up test
Andreas Müller [Thu, 31 Mar 2016 09:13:49 +0000 (11:13 +0200)]
Add orth. rej. to parsing  #5649  and clean up test

8 years agoAdd IEventBaseService to application controller #5403
Patrick Plitzner [Wed, 30 Mar 2016 11:46:08 +0000 (13:46 +0200)]
Add IEventBaseService to application controller #5403

8 years agoAdapt test to service method changes
Patrick Plitzner [Wed, 30 Mar 2016 09:24:29 +0000 (11:24 +0200)]
Adapt test to service method changes

8 years agoAlso return all specimens belonging to sub classes when specifying
Patrick Plitzner [Wed, 30 Mar 2016 09:16:05 +0000 (11:16 +0200)]
Also return all specimens belonging to sub classes when specifying
SpecimenOrObservationBase as type

8 years agoadd query to ABCDImportConfigurator
Katja Luther [Wed, 30 Mar 2016 09:17:46 +0000 (11:17 +0200)]
add query to ABCDImportConfigurator

8 years ago#5659 fixing hibernate search indexing annotation
Andreas Kohlbecker [Thu, 24 Mar 2016 13:53:37 +0000 (14:53 +0100)]
#5659 fixing hibernate search indexing annotation

8 years ago#5593 springfox 2.4.0
Andreas Kohlbecker [Thu, 24 Mar 2016 11:12:08 +0000 (12:12 +0100)]
#5593 springfox 2.4.0

8 years agoun-ignoring spy.log
Andreas Kohlbecker [Thu, 24 Mar 2016 10:31:34 +0000 (11:31 +0100)]
un-ignoring spy.log

8 years agoSome additional tests for sorting homotypical groups #3338
Andreas Müller [Thu, 24 Mar 2016 10:21:08 +0000 (11:21 +0100)]
Some additional tests for sorting homotypical groups #3338

8 years agoAdd circular check for homotypicgouptaxon comparator #3338
Andreas Müller [Wed, 23 Mar 2016 16:35:13 +0000 (17:35 +0100)]
Add circular check for homotypicgouptaxon comparator #3338

8 years ago#4634 cleaning strings from image EXIF IPTC TIFF metadata
Andreas Kohlbecker [Thu, 24 Mar 2016 09:53:56 +0000 (10:53 +0100)]
#4634 cleaning strings from image EXIF IPTC TIFF metadata

8 years ago#5017 update mailinglists information
Andreas Kohlbecker [Thu, 24 Mar 2016 07:47:58 +0000 (08:47 +0100)]
#5017 update mailinglists information

8 years agoUnignore IPNI Test
Andreas Müller [Wed, 23 Mar 2016 15:38:50 +0000 (16:38 +0100)]
Unignore IPNI Test

8 years ago#5635 indexing : skipping MultilanguageText entities with text == null
Andreas Kohlbecker [Wed, 23 Mar 2016 15:29:02 +0000 (16:29 +0100)]
#5635 indexing : skipping MultilanguageText entities with text == null

8 years agoInclude rank comparison in HomotypicGroupTaxonComparator #3338
Andreas Müller [Wed, 23 Mar 2016 15:19:14 +0000 (16:19 +0100)]
Include rank comparison in HomotypicGroupTaxonComparator #3338

8 years agoPreliminary set IPNI tests to ignore
Andreas Müller [Wed, 23 Mar 2016 14:23:03 +0000 (15:23 +0100)]
Preliminary set IPNI tests to ignore

8 years agominor
Andreas Müller [Wed, 23 Mar 2016 14:08:55 +0000 (15:08 +0100)]
minor

8 years agominor
Katja Luther [Wed, 23 Mar 2016 13:05:57 +0000 (14:05 +0100)]
minor

8 years agoFix bug in HomotypicGroupTaxonComparator #3338
Andreas Müller [Wed, 23 Mar 2016 12:25:34 +0000 (13:25 +0100)]
Fix bug in HomotypicGroupTaxonComparator #3338

8 years agoAdd uuid based method for deleting type designations #5490
Patrick Plitzner [Wed, 23 Mar 2016 12:00:12 +0000 (13:00 +0100)]
Add uuid based method for deleting type designations #5490

8 years ago#5657 futher fixes for the static swagger doc
Andreas Kohlbecker [Tue, 22 Mar 2016 11:57:43 +0000 (12:57 +0100)]
#5657 futher fixes for the static swagger doc

8 years agoAdd method for getting nomenclatural status
Patrick Plitzner [Tue, 22 Mar 2016 11:50:01 +0000 (12:50 +0100)]
Add method for getting nomenclatural status

8 years ago#5657 incomplete static swagger documentation fixed
Andreas Kohlbecker [Mon, 21 Mar 2016 16:45:42 +0000 (17:45 +0100)]
#5657 incomplete static swagger documentation fixed

8 years agoMerge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Patrick Plitzner [Mon, 21 Mar 2016 09:44:37 +0000 (10:44 +0100)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

8 years agoOrdering of multiple Homotypic Groups #3338
Andreas Müller [Sat, 19 Mar 2016 23:30:25 +0000 (00:30 +0100)]
Ordering of multiple Homotypic Groups #3338

8 years agoSome cleanup for HGTaxonComparator #3338
Andreas Müller [Fri, 18 Mar 2016 16:36:10 +0000 (17:36 +0100)]
Some cleanup for HGTaxonComparator  #3338

8 years agoApply HomotypicGroupTaxonComparator to all existing uses of old
Andreas Müller [Fri, 18 Mar 2016 16:01:47 +0000 (17:01 +0100)]
Apply HomotypicGroupTaxonComparator to all existing uses of old
TaxonComparator  #3338

8 years agoCleanup
Andreas Müller [Fri, 18 Mar 2016 15:43:36 +0000 (16:43 +0100)]
Cleanup

8 years agoImprove sort order within a homotypic group (new Comparator) #3338
Andreas Müller [Fri, 18 Mar 2016 15:23:12 +0000 (16:23 +0100)]
Improve sort order within a homotypic group (new Comparator) #3338