cdmlib.git
3 months agoref #10322 handle annotation type filter correctly
Andreas Müller [Thu, 18 Apr 2024 09:21:16 +0000 (11:21 +0200)]
ref #10322 handle annotation type filter correctly

3 months agoref #10322 remove "-" for empty common name language
Andreas Müller [Thu, 18 Apr 2024 08:48:45 +0000 (10:48 +0200)]
ref #10322 remove "-" for empty common name language

3 months agoref #10322 handle annotationTypes
Andreas Müller [Wed, 17 Apr 2024 15:40:21 +0000 (17:40 +0200)]
ref #10322 handle annotationTypes

3 months agoref #10322 add nomenclatural status to taxon/name dto
Andreas Müller [Wed, 17 Apr 2024 15:27:59 +0000 (17:27 +0200)]
ref #10322 add nomenclatural status to taxon/name dto

3 months agoref #10322 add annotation types and marker types to the configurator and handle omit...
Andreas Müller [Tue, 16 Apr 2024 15:15:56 +0000 (17:15 +0200)]
ref #10322 add annotation types and marker types to the configurator and handle omit levels correctly

3 months agoref #10322 add annotation types and marker types to the ws parameters (cont.)
Andreas Müller [Tue, 16 Apr 2024 13:07:34 +0000 (15:07 +0200)]
ref #10322 add annotation types and marker types to the ws parameters (cont.)

3 months agoref #10322, ref #9524 use UUIDs for omit levels (cont.)
Andreas Müller [Tue, 16 Apr 2024 13:07:13 +0000 (15:07 +0200)]
ref #10322, ref #9524 use UUIDs for omit levels (cont.)

3 months agoref #10322, ref #9524 use UUIDs for omit levels
Andreas Müller [Tue, 16 Apr 2024 12:52:26 +0000 (14:52 +0200)]
ref #10322, ref #9524 use UUIDs for omit levels

3 months agoref #10322 add annotation types and marker types to the ws parameters
Andreas Müller [Tue, 16 Apr 2024 12:37:07 +0000 (14:37 +0200)]
ref #10322 add annotation types and marker types to the ws parameters

3 months agoref #10178 implement search with authors
Belen Escobari [Mon, 15 Apr 2024 15:05:49 +0000 (17:05 +0200)]
ref #10178 implement search with authors

3 months agoref #10492
Andreas Müller [Mon, 15 Apr 2024 12:11:02 +0000 (14:11 +0200)]
ref #10492

3 months agoref #10322 update facts dto loader
Andreas Müller [Fri, 12 Apr 2024 14:26:17 +0000 (16:26 +0200)]
ref #10322 update facts dto loader

3 months agoref #10322 fix media handling for facts
Andreas Müller [Fri, 12 Apr 2024 13:44:45 +0000 (15:44 +0200)]
ref #10322 fix media handling for facts

3 months agoref #10322 fix test
Andreas Müller [Fri, 12 Apr 2024 12:43:48 +0000 (14:43 +0200)]
ref #10322 fix test

3 months agoref #10322 add isInvalid attribute to names
Andreas Müller [Fri, 12 Apr 2024 12:32:09 +0000 (14:32 +0200)]
ref #10322 add isInvalid attribute to names

3 months agomake MediaDtoLoader not static
Andreas Müller [Fri, 12 Apr 2024 11:30:35 +0000 (13:30 +0200)]
make MediaDtoLoader not static

3 months agojavadoc
Andreas Müller [Fri, 12 Apr 2024 10:53:35 +0000 (12:53 +0200)]
javadoc

3 months agoref #10322 fix synonym ordering
Andreas Müller [Fri, 12 Apr 2024 10:47:41 +0000 (12:47 +0200)]
ref #10322 fix synonym ordering

3 months agoref #10322 add second ind. ass. and tax. interaction and add first cat. data and...
Andreas Müller [Fri, 12 Apr 2024 10:47:01 +0000 (12:47 +0200)]
ref #10322 add second ind. ass. and tax. interaction and add first cat. data and quant. data

3 months agoref #10322 add CondensedDistribution test for TaxonPageDtoLoaderTest
Andreas Müller [Fri, 12 Apr 2024 08:36:14 +0000 (10:36 +0200)]
ref #10322 add CondensedDistribution test for TaxonPageDtoLoaderTest

3 months agoref #10322 fix CCE in fact comparison
Andreas Müller [Fri, 12 Apr 2024 08:34:16 +0000 (10:34 +0200)]
ref #10322 fix CCE in fact comparison

3 months agocleanup
Andreas Müller [Thu, 11 Apr 2024 18:25:00 +0000 (20:25 +0200)]
cleanup

3 months agoref #10322 add tests for temporal data, individualsAssociations and taxonInteractions
Andreas Müller [Thu, 11 Apr 2024 18:21:37 +0000 (20:21 +0200)]
ref #10322 add tests for temporal data, individualsAssociations and taxonInteractions

3 months agoref #10322 fix test
Andreas Müller [Thu, 11 Apr 2024 16:49:27 +0000 (18:49 +0200)]
ref #10322 fix test

3 months agocleanup
Andreas Müller [Thu, 11 Apr 2024 16:06:00 +0000 (18:06 +0200)]
cleanup

3 months agoref #10322 handle fact media
Andreas Müller [Thu, 11 Apr 2024 14:28:32 +0000 (16:28 +0200)]
ref #10322 handle fact media

3 months agoref #10322 load CommonTaxonName as DTO, support plural for features, base class for...
Andreas Müller [Thu, 11 Apr 2024 13:37:21 +0000 (15:37 +0200)]
ref #10322 load CommonTaxonName as DTO, support plural for features, base class for fact loaders

3 months agoref #10322 load TextData as DTO and cleanup
Andreas Müller [Thu, 11 Apr 2024 11:36:10 +0000 (13:36 +0200)]
ref #10322 load TextData as DTO and cleanup

3 months agoref #9524, ref #10322 some renaming and cleanup and prepared support for marker loadi...
Andreas Müller [Thu, 11 Apr 2024 08:30:41 +0000 (10:30 +0200)]
ref #9524, ref #10322 some renaming and cleanup and prepared support for marker loading (continue)

3 months agoref #9524, ref #10322 some renaming and cleanup and prepared support for marker loading
Andreas Müller [Thu, 11 Apr 2024 08:22:20 +0000 (10:22 +0200)]
ref #9524, ref #10322 some renaming and cleanup and prepared support for marker loading

3 months agoref #9524, ref #10322 improve non-model objects loading (not yet ready)
Andreas Müller [Wed, 10 Apr 2024 20:52:16 +0000 (22:52 +0200)]
ref #9524, ref #10322 improve non-model objects loading (not yet ready)

3 months agoref #10322 add year to name relationship dto (cont.)
Andreas Müller [Wed, 10 Apr 2024 13:09:37 +0000 (15:09 +0200)]
ref #10322 add year to name relationship dto (cont.)

3 months agocleanup
Andreas Müller [Wed, 10 Apr 2024 12:39:26 +0000 (14:39 +0200)]
cleanup

3 months agoref #10322 adapt public source types
Andreas Müller [Wed, 10 Apr 2024 12:38:50 +0000 (14:38 +0200)]
ref #10322 adapt public source types

3 months agoref #10322 add year to name relationship dto
Andreas Müller [Wed, 10 Apr 2024 11:14:34 +0000 (13:14 +0200)]
ref #10322 add year to name relationship dto

3 months agocleanup
Andreas Müller [Wed, 10 Apr 2024 10:48:18 +0000 (12:48 +0200)]
cleanup

3 months agoref #10322 add sort order for default term tree
Andreas Müller [Wed, 10 Apr 2024 10:47:44 +0000 (12:47 +0200)]
ref #10322 add sort order for default term tree

3 months agoref #10322 add sortIndex for ordering facts and order by id if it does not exist
Andreas Müller [Wed, 10 Apr 2024 10:13:29 +0000 (12:13 +0200)]
ref #10322 add sortIndex for ordering facts and order by id if it does not exist

3 months agocleanup
Andreas Müller [Wed, 10 Apr 2024 07:24:10 +0000 (09:24 +0200)]
cleanup

3 months agocleanup
Andreas Müller [Wed, 10 Apr 2024 07:12:45 +0000 (09:12 +0200)]
cleanup

3 months agoref #10178 remove NameMatchingBeanProcessor
Andreas Müller [Wed, 10 Apr 2024 07:12:32 +0000 (09:12 +0200)]
ref #10178 remove NameMatchingBeanProcessor

3 months agoref #10178 infraspecific names not returned when searching for a species
Belen Escobari [Tue, 9 Apr 2024 15:19:58 +0000 (17:19 +0200)]
ref #10178 infraspecific names not returned when searching for a species

3 months agoadapt gbifJson parser
Katja [Fri, 5 Apr 2024 15:32:06 +0000 (17:32 +0200)]
adapt gbifJson parser

3 months agoadapt tests
Katja [Fri, 5 Apr 2024 15:20:13 +0000 (17:20 +0200)]
adapt tests

3 months agoref #10322: use UUIDs for omit levels
Katja [Fri, 5 Apr 2024 13:31:19 +0000 (15:31 +0200)]
ref #10322: use UUIDs for omit levels

3 months agoRevert "ref #9610: MediaInfoFileReader should create inputStream only once"
Katja [Tue, 2 Apr 2024 11:29:26 +0000 (13:29 +0200)]
Revert "ref #9610: MediaInfoFileReader should create inputStream only once"

This reverts commit 76d156c3c8fd2dd3630370708b2ff839b6f3b32d.

3 months agoref #10178 extract adapter methods into own class
Andreas Müller [Wed, 3 Apr 2024 18:33:45 +0000 (20:33 +0200)]
ref #10178 extract adapter methods into own class

3 months agoref #10178 fix jsonConfigurations, introduce api data objects with adapter and cleanup
Andreas Müller [Wed, 3 Apr 2024 17:32:41 +0000 (19:32 +0200)]
ref #10178 fix jsonConfigurations, introduce api data objects with adapter and cleanup

3 months agoref #10178 fix IOOB in replaceGenderEnding
Andreas Müller [Wed, 3 Apr 2024 15:27:21 +0000 (17:27 +0200)]
ref #10178 fix IOOB in replaceGenderEnding

3 months agocleanup
Andreas Müller [Wed, 3 Apr 2024 15:26:23 +0000 (17:26 +0200)]
cleanup

3 months agocleanup
Andreas Müller [Wed, 3 Apr 2024 14:51:16 +0000 (16:51 +0200)]
cleanup

3 months agoref #10322 try to handle omitLevels same as fallbackAreaMarkerTypes
Andreas Müller [Wed, 3 Apr 2024 14:50:26 +0000 (16:50 +0200)]
ref #10322 try to handle omitLevels same as fallbackAreaMarkerTypes

3 months agoref #10178 fix equals for genusOrUninomialWithDistance
Andreas Müller [Wed, 3 Apr 2024 11:02:37 +0000 (13:02 +0200)]
ref #10178  fix equals for genusOrUninomialWithDistance

3 months agoref #10178 remove inline call for taxonNamePartsFromDb
Andreas Müller [Wed, 3 Apr 2024 10:37:08 +0000 (12:37 +0200)]
ref #10178  remove inline call for taxonNamePartsFromDb

3 months agoref #10178 adapt nameMatching controller path and request param
Andreas Müller [Wed, 3 Apr 2024 10:35:34 +0000 (12:35 +0200)]
ref #10178 adapt nameMatching controller path and request param

3 months agocleanup
Andreas Müller [Wed, 3 Apr 2024 10:33:41 +0000 (12:33 +0200)]
cleanup

3 months agoref #10322 make DistributionDtoLoader load annotations and use generic loading for...
Andreas Müller [Tue, 2 Apr 2024 17:27:36 +0000 (19:27 +0200)]
ref #10322 make DistributionDtoLoader load annotations and use generic loading for sources

3 months agoref #10322 handle features with subfeatures correctly
Andreas Müller [Tue, 2 Apr 2024 15:36:08 +0000 (17:36 +0200)]
ref #10322 handle features with subfeatures correctly

4 months agoref #461, ref 10322, ref #7695 do not handle >1 typified names as error in typeDesign...
Andreas Müller [Thu, 28 Mar 2024 21:58:10 +0000 (22:58 +0100)]
ref #461, ref 10322, ref #7695 do not handle >1 typified names as error in typeDesignationSetContainer

4 months agocleanup
Andreas Müller [Thu, 28 Mar 2024 21:55:19 +0000 (22:55 +0100)]
cleanup

4 months agoref #10273 adapt WfoContentExportTransformer
Andreas Müller [Thu, 28 Mar 2024 11:31:06 +0000 (12:31 +0100)]
ref #10273 adapt WfoContentExportTransformer

4 months agoref #10488 add unique citation string and long citation to cdmlight
Andreas Müller [Mon, 25 Mar 2024 21:33:38 +0000 (22:33 +0100)]
ref #10488 add unique citation string and long citation to cdmlight

4 months agoref #10487 rename nameUseInSource to original spelling in CDM light name table
Andreas Müller [Mon, 25 Mar 2024 15:14:58 +0000 (16:14 +0100)]
ref #10487 rename nameUseInSource to original spelling in CDM light name table

4 months agocleanup
Andreas Müller [Fri, 22 Mar 2024 17:49:15 +0000 (18:49 +0100)]
cleanup

4 months agoref #10322, ref #9524, ref #4911 fix omit level handling in computed area trees ...
Andreas Müller [Fri, 22 Mar 2024 17:48:26 +0000 (18:48 +0100)]
ref #10322, ref #9524, ref #4911 fix omit level handling in computed area trees (cont.)

4 months agoref #10322, ref #9524, ref #4911 fix omit level handling in computed area trees
Andreas Müller [Fri, 22 Mar 2024 16:59:10 +0000 (17:59 +0100)]
ref #10322, ref #9524, ref #4911 fix omit level handling in computed area trees

4 months agoref #10322, ref #9524, ref #4911 fix source loading for distribution tree
Andreas Müller [Fri, 22 Mar 2024 11:43:39 +0000 (12:43 +0100)]
ref #10322, ref #9524, ref #4911 fix source loading for distribution tree

4 months agocleanup
Andreas Müller [Fri, 22 Mar 2024 11:43:00 +0000 (12:43 +0100)]
cleanup

4 months agoref #10322, ref #9524, ref #4911 add switch to allow loading the old way until new...
Andreas Müller [Fri, 22 Mar 2024 08:59:00 +0000 (09:59 +0100)]
ref #10322, ref #9524, ref #4911 add switch to allow loading the old way until new is ready

4 months agoref #10322, ref #9524, ref #4911 fix distributionInfoConfig handling in distribution...
Andreas Müller [Fri, 22 Mar 2024 08:01:47 +0000 (09:01 +0100)]
ref #10322, ref #9524, ref #4911 fix distributionInfoConfig handling in distribution service

4 months agocleanup
Andreas Müller [Fri, 22 Mar 2024 07:07:42 +0000 (08:07 +0100)]
cleanup

4 months agoref #9524 fix compile errors
Andreas Müller [Fri, 22 Mar 2024 05:30:13 +0000 (06:30 +0100)]
ref #9524 fix compile errors

4 months agoref #9524 improve non-dto object loading
Andreas Müller [Thu, 21 Mar 2024 22:04:32 +0000 (23:04 +0100)]
ref #9524 improve non-dto object loading

4 months agorename TaggedCacheHelper ->TaggedTextFormatter (cont.)
Andreas Müller [Thu, 21 Mar 2024 21:45:42 +0000 (22:45 +0100)]
rename TaggedCacheHelper ->TaggedTextFormatter (cont.)

4 months agoref #10322 move source type filter to base class (in develop)
Andreas Müller [Thu, 21 Mar 2024 21:45:12 +0000 (22:45 +0100)]
ref #10322 move source type filter to base class (in develop)

4 months agoref #10273 add description types (cont.)
Andreas Müller [Thu, 21 Mar 2024 21:44:08 +0000 (22:44 +0100)]
ref #10273 add description types (cont.)

4 months agorename TaggedCacheHelper ->TaggedTextFormatter
Andreas Müller [Thu, 21 Mar 2024 21:09:01 +0000 (22:09 +0100)]
rename TaggedCacheHelper ->TaggedTextFormatter

4 months agoref #10322 move source type filter to base class
Andreas Müller [Fri, 1 Mar 2024 15:31:44 +0000 (16:31 +0100)]
ref #10322 move source type filter to base class

4 months agoref #10273 add description types
Andreas Müller [Thu, 21 Mar 2024 19:43:53 +0000 (20:43 +0100)]
ref #10273 add description types

4 months agocleanup
Andreas Müller [Thu, 21 Mar 2024 19:43:08 +0000 (20:43 +0100)]
cleanup

4 months agoref #10322 filter sources by type (primary sources only)
Andreas Müller [Thu, 21 Mar 2024 15:02:59 +0000 (16:02 +0100)]
ref #10322 filter sources by type (primary sources only)

4 months agoref #10273 add missing establishmentMeans column label
Andreas Müller [Thu, 21 Mar 2024 11:49:23 +0000 (12:49 +0100)]
ref #10273 add missing establishmentMeans column label

4 months agoref #10178 namematching Controller
Belen Escobari [Thu, 21 Mar 2024 08:33:15 +0000 (09:33 +0100)]
ref #10178 namematching Controller

4 months agoref #10273 add base classes for WFO exports
Andreas Müller [Wed, 20 Mar 2024 22:08:49 +0000 (23:08 +0100)]
ref #10273 add base classes for WFO exports

4 months agoref #10273 some first steps for the WFO content export
Andreas Müller [Wed, 20 Mar 2024 21:41:52 +0000 (22:41 +0100)]
ref #10273 some first steps for the WFO content export

4 months agoref #7771 always use defined order for names that are the same in the name- or titlec...
Andreas Müller [Wed, 20 Mar 2024 07:38:15 +0000 (08:38 +0100)]
ref #7771 always use defined order for names that are the same in the name- or titlecache (e.g. MAN) (cont. by adding authorshipCache as criteria)

4 months agoref #7771 always use defined order for names that are the same in the name- or titlec...
Andreas Müller [Tue, 19 Mar 2024 22:30:13 +0000 (23:30 +0100)]
ref #7771 always use defined order for names that are the same in the name- or titlecache (e.g. MAN) (cont. by adding also taxon uuid as criteria)

4 months agoref #7771 always use defined order for names that are the same in the name- or titlec...
Andreas Müller [Tue, 19 Mar 2024 22:28:27 +0000 (23:28 +0100)]
ref #7771 always use defined order for names that are the same in the name- or titlecache (e.g. MAN)

4 months agocleanup
Andreas Müller [Tue, 19 Mar 2024 22:25:07 +0000 (23:25 +0100)]
cleanup

4 months agominor
Andreas Müller [Tue, 19 Mar 2024 22:05:42 +0000 (23:05 +0100)]
minor

4 months agoRevert "ref #7771: test adaption"
Katja [Thu, 14 Mar 2024 11:53:03 +0000 (12:53 +0100)]
Revert "ref #7771: test adaption"

This reverts commit 9264d508afc6823675e7e541b3898ac9b795d9e0.

4 months agoRevert "ref #7771: use representation of taxon rel type for display"
Katja [Thu, 14 Mar 2024 11:51:38 +0000 (12:51 +0100)]
Revert "ref #7771: use representation of taxon rel type for display"

This reverts commit 89f511ab0ea7e38a282e9ff60f5e4ec0e460d40e.

4 months agoref #7771: test adaption
Katja [Thu, 14 Mar 2024 11:37:42 +0000 (12:37 +0100)]
ref #7771: test adaption

4 months agoref #7771: use representation of taxon rel type for display
Katja [Thu, 14 Mar 2024 11:24:41 +0000 (12:24 +0100)]
ref #7771: use representation of taxon rel type for display

4 months agoset the test to ignore again
Katja [Thu, 7 Mar 2024 08:18:38 +0000 (09:18 +0100)]
set the test to ignore again

4 months agoref #7771: adapt TaxonRelationshipFormatter
Katja [Wed, 6 Mar 2024 13:38:45 +0000 (14:38 +0100)]
ref #7771: adapt TaxonRelationshipFormatter

4 months agoref #10178 exact matches score corrected
Belen Escobari [Mon, 4 Mar 2024 15:29:24 +0000 (16:29 +0100)]
ref #10178 exact matches score corrected

4 months agoref #10178 list of names as input
Belen Escobari [Mon, 4 Mar 2024 15:04:51 +0000 (16:04 +0100)]
ref #10178 list of names as input

5 months agocleanup
Andreas Müller [Thu, 29 Feb 2024 08:23:43 +0000 (09:23 +0100)]
cleanup

5 months agouse StringResultDto for ws result
Katja [Thu, 29 Feb 2024 10:11:29 +0000 (11:11 +0100)]
use StringResultDto for ws result