Patric Plitzner [Wed, 4 Mar 2015 15:35:06 +0000 (15:35 +0000)]
- added removeCountryFromLocalityText option to configurator (basically implementing the hack #4677)
Patric Plitzner [Wed, 4 Mar 2015 13:51:11 +0000 (13:51 +0000)]
- shortened regex
Patric Plitzner [Wed, 4 Mar 2015 13:34:32 +0000 (13:34 +0000)]
- fixed temporary geolocation hack
Patric Plitzner [Wed, 4 Mar 2015 13:00:16 +0000 (13:00 +0000)]
- fixed java doc
Patric Plitzner [Wed, 4 Mar 2015 11:30:18 +0000 (11:30 +0000)]
- fixed name matching when ignoring author
Patric Plitzner [Wed, 4 Mar 2015 10:36:51 +0000 (10:36 +0000)]
- re-added temporary hack
Patric Plitzner [Wed, 4 Mar 2015 09:45:01 +0000 (09:45 +0000)]
- removed temporary hack
Patric Plitzner [Wed, 4 Mar 2015 09:44:25 +0000 (09:44 +0000)]
- fixed mapUnitIdToBarcode
- fixed NPE for name parsing
Patric Plitzner [Wed, 4 Mar 2015 07:46:33 +0000 (07:46 +0000)]
- added config option to choose mapping of ABCD UnitID
- added config option to ignore authorship when matching taxa
- added first draft of ggbn extension parsing
Patric Plitzner [Tue, 3 Mar 2015 14:18:19 +0000 (14:18 +0000)]
- added ignoreAuthorship flag to ABCD import
- when set to true taxon name matching will be done without the the authorship just on the nameCache of the NonViralName
Patric Plitzner [Tue, 3 Mar 2015 13:31:13 +0000 (13:31 +0000)]
- reset all relevant dataholder fields for every unit
Patric Plitzner [Tue, 3 Mar 2015 13:28:45 +0000 (13:28 +0000)]
- added methods to handle identifiers
Patric Plitzner [Tue, 3 Mar 2015 11:46:54 +0000 (11:46 +0000)]
- fixed java doc
Andreas Müller [Mon, 2 Mar 2015 13:47:44 +0000 (13:47 +0000)]
latest changes for Markup import
Andreas Müller [Mon, 2 Mar 2015 12:38:22 +0000 (12:38 +0000)]
latest changes for Markup import
Andreas Müller [Mon, 2 Mar 2015 12:37:15 +0000 (12:37 +0000)]
add NewInstance for Names in Determination Event
Andreas Müller [Fri, 27 Feb 2015 12:50:29 +0000 (12:50 +0000)]
adadpt TimePeriodParser to include lifespan
Andreas Müller [Fri, 27 Feb 2015 10:40:26 +0000 (10:40 +0000)]
minor
Andreas Müller [Wed, 25 Feb 2015 22:11:37 +0000 (22:11 +0000)]
add some doubtful taxon relationships tom BM transformer
Katja Luther [Mon, 23 Feb 2015 09:24:48 +0000 (09:24 +0000)]
Patric Plitzner [Tue, 17 Feb 2015 11:43:30 +0000 (11:43 +0000)]
- fixed paging for compressed specimen table
Patric Plitzner [Tue, 17 Feb 2015 10:20:21 +0000 (10:20 +0000)]
- added pager to associated field units service method
Andreas Müller [Thu, 12 Feb 2015 11:41:41 +0000 (11:41 +0000)]
minor
Andreas Müller [Thu, 12 Feb 2015 10:10:39 +0000 (10:10 +0000)]
latest changes to Markup import
Andreas Müller [Thu, 12 Feb 2015 10:07:07 +0000 (10:07 +0000)]
minor
Alexander Oppermann [Thu, 12 Feb 2015 09:28:34 +0000 (09:28 +0000)]
moved flockSearch from checklistDemoController to TaxonController and renamed it to inlucdedTaxa
Katja Luther [Wed, 11 Feb 2015 13:23:45 +0000 (13:23 +0000)]
add UpdateResult and make DeleteResult a subclass
Katja Luther [Wed, 11 Feb 2015 13:23:08 +0000 (13:23 +0000)]
Andreas Müller [Wed, 11 Feb 2015 12:40:15 +0000 (12:40 +0000)]
minor
Andreas Kohlbecker [Mon, 9 Feb 2015 16:05:11 +0000 (16:05 +0000)]
adding missing statisticalValues to init strategy, related to #4639 (Show quantitative data correctly in Data portal (for Cyprus portal))
Andreas Kohlbecker [Mon, 9 Feb 2015 16:05:08 +0000 (16:05 +0000)]
typo
Andreas Müller [Fri, 6 Feb 2015 22:29:00 +0000 (22:29 +0000)]
add amplification cache test
Andreas Müller [Fri, 6 Feb 2015 17:49:14 +0000 (17:49 +0000)]
change subtree param name
Andreas Müller [Fri, 6 Feb 2015 17:38:42 +0000 (17:38 +0000)]
Add correct paging to findByIdentifier
Andreas Müller [Fri, 6 Feb 2015 17:31:20 +0000 (17:31 +0000)]
allow streaming for PagerParams
Andreas Kohlbecker [Fri, 6 Feb 2015 14:02:16 +0000 (14:02 +0000)]
fixing ambigious mvc controller mapping
Andreas Kohlbecker [Tue, 3 Feb 2015 16:09:29 +0000 (16:09 +0000)]
fixing bug regarding taxon lsid in catalogue service
Andreas Kohlbecker [Tue, 3 Feb 2015 15:15:09 +0000 (15:15 +0000)]
adding lsid to TaxonInformation
Andreas Kohlbecker [Tue, 3 Feb 2015 15:15:06 +0000 (15:15 +0000)]
working on documentation and fixing include pattern for catalogue services
Alexander Oppermann [Mon, 2 Feb 2015 15:24:24 +0000 (15:24 +0000)]
extended controller to enable feature export
Cherian Mathew [Mon, 2 Feb 2015 13:35:24 +0000 (13:35 +0000)]
DeleteResult : made serializable
remote-security : added remoting url intercept
remoting-services : made user service public
web.xml : added filter chain for securing remoting services
Katja Luther [Thu, 29 Jan 2015 12:08:31 +0000 (12:08 +0000)]
Katja Luther [Thu, 29 Jan 2015 12:02:14 +0000 (12:02 +0000)]
Katja Luther [Thu, 29 Jan 2015 10:36:34 +0000 (10:36 +0000)]
fix #4613
Alexander Oppermann [Wed, 28 Jan 2015 16:42:45 +0000 (16:42 +0000)]
created new service in classificationService
it is a first draft of the createHierarchyService
based on taxonNames and until genus level.
Patric Plitzner [Wed, 28 Jan 2015 14:26:07 +0000 (14:26 +0000)]
- check related objects for DeterminationEvents
Patric Plitzner [Wed, 28 Jan 2015 07:54:01 +0000 (07:54 +0000)]
- fixed deletion result relates objects
- removed @Ignore from tests
Patric Plitzner [Tue, 27 Jan 2015 13:26:22 +0000 (13:26 +0000)]
- replaced instanceof with isInstanceOf()
- replaced class cast expressions with deproxy
Patric Plitzner [Tue, 27 Jan 2015 12:54:20 +0000 (12:54 +0000)]
- temporarily disabled tests to have jenkins compile
Patric Plitzner [Tue, 27 Jan 2015 12:44:03 +0000 (12:44 +0000)]
- temporarily disabled tests to have jenkins compile
Patric Plitzner [Tue, 27 Jan 2015 10:55:03 +0000 (10:55 +0000)]
- error handling for report file
Patric Plitzner [Tue, 27 Jan 2015 10:54:38 +0000 (10:54 +0000)]
- only add the conflicting related objects to the DeleteResults
Andreas Kohlbecker [Mon, 26 Jan 2015 14:37:39 +0000 (14:37 +0000)]
adding hand written documentation to the swagger ui and redirecting to doc/ automatically fromt the index page
Andreas Müller [Mon, 26 Jan 2015 14:36:35 +0000 (14:36 +0000)]
remove lucene-core exclusion as it is already versioned
Andreas Müller [Mon, 26 Jan 2015 14:32:47 +0000 (14:32 +0000)]
remove guava exclusion from swagger
Cherian Mathew [Mon, 26 Jan 2015 12:54:22 +0000 (12:54 +0000)]
PolytomousKey, PolytomousKeyNode : Added merge to cascade annotation
cdmlib-remote-servlet.xml, ConcurrentSessionTest.java : spelling checks
CdmCacher : made cache lement getter methods public
remoting-services.xml, httpInvokerServices : added new services
Andreas Kohlbecker [Mon, 26 Jan 2015 10:17:20 +0000 (10:17 +0000)]
fixing swagger api-docs url
Andreas Müller [Sat, 24 Jan 2015 09:05:55 +0000 (09:05 +0000)]
avoid LIE for subtree
Andreas Müller [Sat, 24 Jan 2015 06:38:46 +0000 (06:38 +0000)]
make matchmode case insensitive in controller
Andreas Müller [Sat, 24 Jan 2015 06:19:09 +0000 (06:19 +0000)]
for testing
Andreas Müller [Sat, 24 Jan 2015 05:32:23 +0000 (05:32 +0000)]
add taxonNode to session in countByIdentifier
Andreas Müller [Fri, 23 Jan 2015 22:03:44 +0000 (22:03 +0000)]
improve byIdentifer service
Andreas Müller [Fri, 23 Jan 2015 20:51:18 +0000 (20:51 +0000)]
Rename mapping endpoint for findByIdentifier with subtree
Andreas Müller [Fri, 23 Jan 2015 17:16:07 +0000 (17:16 +0000)]
change name of findByIdentifer in TaxonController
Patric Plitzner [Fri, 23 Jan 2015 15:12:53 +0000 (15:12 +0000)]
- added @Ignore to failing test -_-
Patric Plitzner [Fri, 23 Jan 2015 14:50:02 +0000 (14:50 +0000)]
fixed
Andreas Müller [Fri, 23 Jan 2015 14:33:37 +0000 (14:33 +0000)]
added excludes for swagger
Patric Plitzner [Fri, 23 Jan 2015 13:59:34 +0000 (13:59 +0000)]
- added ABCD import test for subspecies
Andreas Müller [Fri, 23 Jan 2015 12:30:59 +0000 (12:30 +0000)]
add findByIdentifer to TaxonListController for classification filter
Andreas Müller [Fri, 23 Jan 2015 12:20:27 +0000 (12:20 +0000)]
null handling for find(UUID) and load(UUID) methods
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:39 +0000 (11:40 +0000)]
first fully working swagger doc on the cdm remote api. Model scan ist still disabled to allow faster application startup. Remote api organized in multiple swagger groups. Adding support for swagger goups to the swagger-ui. Cuostomization of the swagger-ui: branding and adding a menu to link to the swagger groups.
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:27 +0000 (11:40 +0000)]
removing duplicate link in index.html
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:25 +0000 (11:40 +0000)]
experimenting with multiple swager groups and fixing the bean loading order
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:23 +0000 (11:40 +0000)]
index.html links to swagger-ui
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:21 +0000 (11:40 +0000)]
removing obsolete dependencies and exclusions from pom.xml
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:19 +0000 (11:40 +0000)]
activating the swagger rest service documentation by reverting the revertion of the premature committed experimental branch (swagger) svn: r21387, git:
be528c1edf
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:04 +0000 (11:40 +0000)]
updating documnetation
Patric Plitzner [Fri, 23 Jan 2015 10:35:05 +0000 (10:35 +0000)]
- fixed potential NPE
Patric Plitzner [Fri, 23 Jan 2015 09:50:56 +0000 (09:50 +0000)]
- added option to specify a URI for the import report to write it to a file
Patric Plitzner [Fri, 23 Jan 2015 08:07:08 +0000 (08:07 +0000)]
- add taxon name instead of taxon for determination
- refactored taxon search
- 1. search for taxon name (create if not found)
- 2. search with taxon name for taxon (create if not found)
- added basic reporting functionality to import
Patric Plitzner [Fri, 23 Jan 2015 07:55:05 +0000 (07:55 +0000)]
- fixed typo
Andreas Müller [Fri, 23 Jan 2015 00:29:51 +0000 (00:29 +0000)]
fix NPE in findByIdentifier controller method
Andreas Müller [Thu, 22 Jan 2015 15:47:08 +0000 (15:47 +0000)]
missing persistence changes for findByIdentifier
Patric Plitzner [Thu, 22 Jan 2015 15:11:23 +0000 (15:11 +0000)]
- added two methods to find/create names and taxa
- fixed double creation of sub species
Patric Plitzner [Thu, 22 Jan 2015 15:05:54 +0000 (15:05 +0000)]
- added "else if" to avoid unnecessary checking
Andreas Müller [Thu, 22 Jan 2015 13:27:38 +0000 (13:27 +0000)]
fix findByIdentifier failing test
Andreas Müller [Thu, 22 Jan 2015 10:40:49 +0000 (10:40 +0000)]
latest changes for findByIdentifier service
Andreas Müller [Thu, 22 Jan 2015 10:27:44 +0000 (10:27 +0000)]
change methodName fix for findByIdentier service
Patric Plitzner [Thu, 22 Jan 2015 09:16:34 +0000 (09:16 +0000)]
- increased code readability
Andreas Müller [Wed, 21 Jan 2015 16:31:46 +0000 (16:31 +0000)]
improve and rename findByIdentifier service
Andreas Müller [Wed, 21 Jan 2015 15:50:52 +0000 (15:50 +0000)]
fix MatchMode.prepend bug
Patric Plitzner [Wed, 21 Jan 2015 13:12:21 +0000 (13:12 +0000)]
- added parameter for each deduplication (references, classifications)
Patric Plitzner [Wed, 21 Jan 2015 13:08:14 +0000 (13:08 +0000)]
- added ABCD import paramater "skipDeduplication"
Patric Plitzner [Wed, 21 Jan 2015 09:25:57 +0000 (09:25 +0000)]
- avoid duplicating the default "ABCD classic" reference for every single imported unit
Cherian Mathew [Mon, 19 Jan 2015 15:33:52 +0000 (15:33 +0000)]
removed vaadin webapp dirs
Cherian Mathew [Mon, 19 Jan 2015 15:29:19 +0000 (15:29 +0000)]
removed vaadin references
Cherian Mathew [Mon, 19 Jan 2015 15:23:16 +0000 (15:23 +0000)]
removed references to vaadin and updated servlet scope to provided
Cherian Mathew [Mon, 19 Jan 2015 15:19:34 +0000 (15:19 +0000)]
pom.xml : added maven dependency goal to unpack the corresponding cdm-vaadin war into a directory in the target dir and added this directory as a resource when building the cdmlib-remote-webapp war
pom.xml, applicationContext.xml, cdmlib-remote-servlet.xml, web.xml, SpringMVCConfig.java : removed references to Vaadin
jetty.xml : changed configuration to be compatible with jetty 9
cdmlib-remote-servlet : added profile to switch on / off remoting depending on vm argument
src/main/webapp/VAADIN : removed vaadin webapp dir
Cherian Mathew [Mon, 19 Jan 2015 14:49:47 +0000 (14:49 +0000)]
removed references to vaadin in pom file
removed vaadin classes as they have been migrated to cdm-vaadin project
Andreas Müller [Mon, 19 Jan 2015 13:24:05 +0000 (13:24 +0000)]
remove some javadocs