jenkins [Thu, 15 Jul 2021 14:26:55 +0000 (16:26 +0200)]
updating poms for branch'release/5.25.0' with non-snapshot versions
Andreas Müller [Thu, 15 Jul 2021 14:13:21 +0000 (16:13 +0200)]
ref #4311 fix single quote escape in collectorTitle updater (cont.)
Andreas Müller [Thu, 15 Jul 2021 14:09:10 +0000 (16:09 +0200)]
ref #4311 fix single quote escape in collectorTitle updater
jenkins [Thu, 15 Jul 2021 13:52:44 +0000 (15:52 +0200)]
updating poms for 5.25.0 branch with snapshot versions
Andreas Müller [Thu, 15 Jul 2021 13:23:50 +0000 (15:23 +0200)]
ref #9657 cleanup and make Partial comparator configurable for null handling
Andreas Müller [Thu, 15 Jul 2021 12:47:29 +0000 (14:47 +0200)]
ref #9657 fully implement compare method for partials used in CDM
Andreas Müller [Thu, 15 Jul 2021 09:52:56 +0000 (11:52 +0200)]
ref #9657 fix gatheringDate compare for empty dates (e.g. freetext dates)
Andreas Müller [Tue, 13 Jul 2021 11:57:24 +0000 (13:57 +0200)]
fix #9705 fix case with empty reference having only protected titleCache
Andreas Müller [Tue, 13 Jul 2021 08:54:33 +0000 (10:54 +0200)]
fix #9705 remove nomRef token and fix nomRef formatting for references without title
Andreas Müller [Mon, 12 Jul 2021 15:18:22 +0000 (17:18 +0200)]
adapt setter for CdmLightExportConfigurator.condensedDistributionConfiguration
Andreas Müller [Mon, 12 Jul 2021 14:12:54 +0000 (16:12 +0200)]
cleanup
Andreas Müller [Mon, 12 Jul 2021 14:12:24 +0000 (16:12 +0200)]
improve logging for existing identifiers in IdentifierImport
Andreas Müller [Mon, 12 Jul 2021 14:11:58 +0000 (16:11 +0200)]
add factory method to CdmLightExportConfigurator
Andreas Müller [Mon, 12 Jul 2021 14:10:49 +0000 (16:10 +0200)]
cleanup
Andreas Müller [Fri, 9 Jul 2021 13:06:58 +0000 (15:06 +0200)]
fix #8140 #note-5 removed paralectotype from list of sourcable type designation status
Katja Luther [Thu, 8 Jul 2021 18:42:02 +0000 (20:42 +0200)]
fix null check
Andreas Müller [Thu, 8 Jul 2021 18:11:49 +0000 (20:11 +0200)]
cleanup CdmLightClassificationExport
Andreas Müller [Thu, 8 Jul 2021 17:19:42 +0000 (19:19 +0200)]
cleanup (cont.)
Andreas Müller [Thu, 8 Jul 2021 16:52:18 +0000 (18:52 +0200)]
cleanup
Andreas Müller [Thu, 8 Jul 2021 16:49:23 +0000 (18:49 +0200)]
ref #9703 Improve handling of type designations with no status in TypeDesignationSetManager
Andreas Müller [Thu, 8 Jul 2021 16:43:00 +0000 (18:43 +0200)]
cleanup
Katja Luther [Thu, 8 Jul 2021 11:58:40 +0000 (13:58 +0200)]
adapt cdmLight export test to synonym symbols
Katja Luther [Thu, 8 Jul 2021 11:01:46 +0000 (13:01 +0200)]
fix typedesignation String with citation
Andreas Müller [Thu, 8 Jul 2021 10:49:19 +0000 (12:49 +0200)]
fix #9702 handle specimen without field unit correctly in TypeDesignationSetManager
Andreas Müller [Thu, 8 Jul 2021 10:47:02 +0000 (12:47 +0200)]
ref #9702 add factory method for Collection
Andreas Müller [Wed, 7 Jul 2021 16:08:09 +0000 (18:08 +0200)]
fix #9237 fix incorrect sortIndex updating (use existing sortindex, not id order)
Andreas Müller [Wed, 7 Jul 2021 16:06:29 +0000 (18:06 +0200)]
cleanup
Andreas Müller [Wed, 7 Jul 2021 15:17:39 +0000 (17:17 +0200)]
cleanup
Andreas Müller [Wed, 7 Jul 2021 15:17:06 +0000 (17:17 +0200)]
remove unused methods in AgentDao and AgentService (cont.)
Andreas Müller [Wed, 7 Jul 2021 15:06:16 +0000 (17:06 +0200)]
remove unused methods in AgentDao and AgentService
Andreas Müller [Tue, 6 Jul 2021 13:02:29 +0000 (15:02 +0200)]
cleanup
Andreas Müller [Tue, 6 Jul 2021 12:46:02 +0000 (14:46 +0200)]
adapt generics in TeamOrPersonUuidAndTitleCache (cont. 2)
Andreas Müller [Tue, 6 Jul 2021 12:03:57 +0000 (14:03 +0200)]
adapt generics in TeamOrPersonUuidAndTitleCache (cont.)
Andreas Müller [Tue, 6 Jul 2021 11:56:28 +0000 (13:56 +0200)]
adapt generics in TeamOrPersonUuidAndTitleCache
Andreas Müller [Tue, 6 Jul 2021 11:55:59 +0000 (13:55 +0200)]
cleanup
Katja Luther [Tue, 6 Jul 2021 08:51:50 +0000 (10:51 +0200)]
ref #9646: add unspecific non reflations
Andreas Müller [Tue, 6 Jul 2021 08:34:30 +0000 (10:34 +0200)]
ref #5655, ref #5640 unspecific 'non' NameRelationshipType added
Andreas Müller [Tue, 6 Jul 2021 08:30:33 +0000 (10:30 +0200)]
cleanup
Andreas Müller [Mon, 5 Jul 2021 17:44:05 +0000 (19:44 +0200)]
fix #9695 a predicate for supportsTaxonConcepts
Andreas Müller [Mon, 5 Jul 2021 13:48:04 +0000 (15:48 +0200)]
cleanup
Andreas Müller [Mon, 5 Jul 2021 11:14:49 +0000 (13:14 +0200)]
adapt test H2 in cached model to v5.25.1 in cdmlib
Andreas Müller [Mon, 5 Jul 2021 11:09:09 +0000 (13:09 +0200)]
adapt correct model schema number
Andreas Müller [Fri, 2 Jul 2021 12:31:47 +0000 (14:31 +0200)]
ref #9692 add operation class and link from TaxonRelationship
Andreas Müller [Fri, 2 Jul 2021 11:05:06 +0000 (13:05 +0200)]
ref #4311 move update script for collector title to 5.25.1
Andreas Müller [Fri, 2 Jul 2021 11:03:05 +0000 (13:03 +0200)]
add schemaversion 5.25.1
Andreas Müller [Mon, 5 Jul 2021 08:43:13 +0000 (10:43 +0200)]
ref #6714 always remove ddl file before creating new one (for mvn without clean)
Katja Luther [Mon, 5 Jul 2021 07:57:58 +0000 (09:57 +0200)]
ref #9680: adapt agent search methods to fill teamOrPersonUuidAndTitlecache dto
Andreas Müller [Fri, 2 Jul 2021 22:02:17 +0000 (00:02 +0200)]
cleanup
Andreas Müller [Fri, 2 Jul 2021 17:44:43 +0000 (19:44 +0200)]
fix #2653 remove the last countAllRelationships method from persistence as it is not used and somehow against api conventions
Andreas Müller [Fri, 2 Jul 2021 16:08:50 +0000 (18:08 +0200)]
cleanup
Andreas Müller [Fri, 2 Jul 2021 15:10:10 +0000 (17:10 +0200)]
cleanup
Andreas Müller [Fri, 2 Jul 2021 11:54:24 +0000 (13:54 +0200)]
ref #9599 fix taggedFullTitle test
Andreas Müller [Fri, 2 Jul 2021 11:00:37 +0000 (13:00 +0200)]
minor
Andreas Müller [Fri, 2 Jul 2021 10:01:12 +0000 (12:01 +0200)]
ref #9678 improve titleGeneration for derived units with empty field units
Katja Luther [Fri, 2 Jul 2021 08:45:02 +0000 (10:45 +0200)]
adapt tests for cdmLightExport
Andreas Müller [Fri, 2 Jul 2021 08:30:56 +0000 (10:30 +0200)]
ref #4311 improve collectorTitle update script
Andreas Müller [Fri, 2 Jul 2021 08:29:46 +0000 (10:29 +0200)]
cleanup
Andreas Müller [Fri, 2 Jul 2021 08:29:25 +0000 (10:29 +0200)]
ref #9664, ref #4311 improve cache update for teams
Katja Luther [Fri, 2 Jul 2021 07:56:44 +0000 (09:56 +0200)]
adapt tests for cdmLightExport
Katja Luther [Thu, 1 Jul 2021 15:41:08 +0000 (17:41 +0200)]
ref #9680: adapt searches to search also for collector title cache - continue
Katja Luther [Thu, 1 Jul 2021 14:09:59 +0000 (16:09 +0200)]
ref #9646: second name of relation should be in italics, too
Andreas Müller [Thu, 1 Jul 2021 13:01:34 +0000 (15:01 +0200)]
ref #9683 adapt method name and javadoc
Andreas Müller [Thu, 1 Jul 2021 12:36:59 +0000 (14:36 +0200)]
ref #9663 adapt test to test for removing the suffix (jpg and &mo=file)
Katja Luther [Thu, 1 Jul 2021 07:52:18 +0000 (09:52 +0200)]
ref #9680: adapt searches to search also for collector title cache - add TeamOrPersonUuidAndTitleCache
Katja Luther [Thu, 1 Jul 2021 07:34:52 +0000 (09:34 +0200)]
ref #9680: adapt searches to search also for collector title cache
Katja Luther [Wed, 30 Jun 2021 08:59:39 +0000 (10:59 +0200)]
ref #9680:adapt seach methods to search for collectortitlecache, also for nomenclatural author search if pattern starts with *
Katja Luther [Wed, 30 Jun 2021 08:55:22 +0000 (10:55 +0200)]
ref #9680:adapt seach methods to search for collectortitlecache
Katja Luther [Wed, 30 Jun 2021 08:53:52 +0000 (10:53 +0200)]
smaller changes in CdmLIghtExport
Andreas Müller [Tue, 29 Jun 2021 21:04:16 +0000 (23:04 +0200)]
ref #4311 add initials + family default for collectorTitleCache
Andreas Müller [Tue, 29 Jun 2021 21:02:48 +0000 (23:02 +0200)]
cleanup
Andreas Müller [Tue, 29 Jun 2021 20:08:29 +0000 (22:08 +0200)]
ref #9664 , ref #4311 fix cache handling for collectorTitle and nomenclaturalTitle
Andreas Müller [Tue, 29 Jun 2021 19:21:25 +0000 (21:21 +0200)]
ref #9683. ref #9664 fix tests in AgentServiceImplTest
Andreas Müller [Tue, 29 Jun 2021 19:09:14 +0000 (21:09 +0200)]
ref #9664 , ref #4311 adapt autoInitializer
Andreas Müller [Tue, 29 Jun 2021 18:57:18 +0000 (20:57 +0200)]
cleanup
Andreas Müller [Tue, 29 Jun 2021 16:26:06 +0000 (18:26 +0200)]
ref #6714 fix ddl creation with template
Andreas Müller [Tue, 29 Jun 2021 10:22:47 +0000 (12:22 +0200)]
cleanup
Andreas Müller [Mon, 28 Jun 2021 15:31:07 +0000 (17:31 +0200)]
ref #9664 , ref #4311 fix updateCaches in Person
Katja Luther [Mon, 28 Jun 2021 14:07:58 +0000 (16:07 +0200)]
fix updateCaches - do not set nomenclaturalTitle but nomenclaturalTitleCache
Andreas Müller [Mon, 28 Jun 2021 13:55:46 +0000 (15:55 +0200)]
ref #9664 fix test data
Andreas Müller [Mon, 28 Jun 2021 13:45:58 +0000 (15:45 +0200)]
ref #4311 fix collectorTitleCache handling in Team an in person2Team
Andreas Müller [Mon, 28 Jun 2021 13:43:30 +0000 (15:43 +0200)]
ref #9664 fix nomTitleCache test for fully empty person2Team
Andreas Müller [Mon, 28 Jun 2021 13:40:22 +0000 (15:40 +0200)]
remove isGeneratingTitleCache which is not in use anymore
Andreas Müller [Mon, 28 Jun 2021 10:16:35 +0000 (12:16 +0200)]
cleanup
Andreas Kohlbecker [Mon, 28 Jun 2021 10:09:50 +0000 (12:09 +0200)]
ref #9684 updating CdmBaseType constant names to latest model
Andreas Kohlbecker [Mon, 28 Jun 2021 10:06:40 +0000 (12:06 +0200)]
ref #9684 adding more basetypes to CdmBaseType
Andreas Müller [Mon, 28 Jun 2021 09:28:30 +0000 (11:28 +0200)]
ref #9683 add loadProxy method to services and adapt test to work with current auto initialize settings
Andreas Müller [Mon, 28 Jun 2021 09:23:44 +0000 (11:23 +0200)]
ref #9664 remove setting person setNomenclaturalTitle during cache update and avoid recomputing nomTitleCache and collectorTitleCache (not sure what this is needed for)
Andreas Müller [Mon, 28 Jun 2021 08:35:32 +0000 (10:35 +0200)]
cleanup
Andreas Müller [Mon, 28 Jun 2021 07:39:33 +0000 (09:39 +0200)]
fix #9683 autoinitialize root bean
Andreas Müller [Mon, 28 Jun 2021 07:38:59 +0000 (09:38 +0200)]
cleanup
Andreas Müller [Sat, 26 Jun 2021 07:25:42 +0000 (09:25 +0200)]
ref #9433 fix incorrect handling for MAN without sec/sensu reference
Andreas Müller [Fri, 25 Jun 2021 16:40:09 +0000 (18:40 +0200)]
cleanup
Andreas Müller [Fri, 25 Jun 2021 10:01:30 +0000 (12:01 +0200)]
update CdmCache and test DB for cdmlib to 5.25
Andreas Müller [Fri, 25 Jun 2021 08:03:20 +0000 (10:03 +0200)]
ref #9678 implement cache strategies for field unit and derived unti within cdmlib model
Andreas Müller [Fri, 25 Jun 2021 07:40:27 +0000 (09:40 +0200)]
cleanup and return empty Set (not null) for getOriginals
Andreas Müller [Fri, 25 Jun 2021 07:37:07 +0000 (09:37 +0200)]
add Identifier table to test data schema
Andreas Müller [Fri, 18 Jun 2021 14:14:47 +0000 (16:14 +0200)]
cleanup
Andreas Müller [Fri, 18 Jun 2021 14:13:21 +0000 (16:13 +0200)]
move SingleReadFormatter and SequenceFormatter to molecular package
Andreas Müller [Fri, 18 Jun 2021 13:19:16 +0000 (15:19 +0200)]
ref #4311 Increase size of collectorTitleCache to 800 in update script
Andreas Müller [Fri, 18 Jun 2021 13:18:31 +0000 (15:18 +0200)]
ref #9634 Increase size for AgentBase.titleCache to 800