cdmlib.git
7 years agoadd missing changes
Katja Luther [Fri, 30 Sep 2016 19:09:04 +0000 (21:09 +0200)]
add missing changes

7 years agominor
Katja Luther [Fri, 30 Sep 2016 14:34:25 +0000 (16:34 +0200)]
minor

7 years agospecimen import/search changes
Katja Luther [Fri, 30 Sep 2016 14:09:54 +0000 (16:09 +0200)]
specimen import/search changes

7 years agodelete system.out.println from test
Katja Luther [Tue, 27 Sep 2016 06:55:31 +0000 (08:55 +0200)]
delete system.out.println from test

7 years agoUpdating develop poms back to pre merge state
jenkins [Fri, 23 Sep 2016 13:37:31 +0000 (15:37 +0200)]
Updating develop poms back to pre merge state

7 years agoMerge branch 'master' into develop
jenkins [Fri, 23 Sep 2016 13:37:30 +0000 (15:37 +0200)]
Merge branch 'master' into develop

7 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Fri, 23 Sep 2016 13:37:29 +0000 (15:37 +0200)]
updating develop poms to master versions to avoid merge conflicts

7 years agoMerge branch 'release/4.3.0' 4.3.0
jenkins [Fri, 23 Sep 2016 13:37:26 +0000 (15:37 +0200)]
Merge branch 'release/4.3.0'

7 years agoupdating poms for branch'release/4.3.0' with non-snapshot versions
jenkins [Fri, 23 Sep 2016 13:19:49 +0000 (15:19 +0200)]
updating poms for branch'release/4.3.0' with non-snapshot versions

7 years agoupdating poms for 4.4.0-SNAPSHOT development
jenkins [Fri, 23 Sep 2016 13:09:41 +0000 (15:09 +0200)]
updating poms for 4.4.0-SNAPSHOT development

7 years agoRename doPageChildNodes
Andreas Müller [Fri, 23 Sep 2016 12:48:37 +0000 (14:48 +0200)]
Rename doPageChildNodes

7 years agoref #6065 improved Pager handling
Andreas Müller [Fri, 23 Sep 2016 09:40:44 +0000 (11:40 +0200)]
ref #6065 improved Pager handling

7 years agoref #6065 improved Pager handling and pager exception handling
Andreas Müller [Fri, 23 Sep 2016 09:04:26 +0000 (11:04 +0200)]
ref #6065 improved Pager handling and pager exception handling

7 years agoref #6065 Handle synonyms in taxonInContext
Andreas Müller [Fri, 23 Sep 2016 09:03:05 +0000 (11:03 +0200)]
ref #6065 Handle synonyms in taxonInContext

7 years agoCleanup
Andreas Müller [Fri, 23 Sep 2016 09:00:49 +0000 (11:00 +0200)]
Cleanup

7 years agoref #6065 fix NPEs in classification service
Andreas Müller [Thu, 22 Sep 2016 12:10:54 +0000 (14:10 +0200)]
ref #6065 fix NPEs in classification service

7 years agoref #6065 fix NPE in pageSize/limit
Andreas Müller [Thu, 22 Sep 2016 11:25:20 +0000 (13:25 +0200)]
ref #6065 fix NPE in pageSize/limit

7 years agoref #6065 fix NPE in pageSize
Andreas Müller [Thu, 22 Sep 2016 10:27:27 +0000 (12:27 +0200)]
ref #6065 fix NPE in pageSize

7 years agoref #6065 fix page size and add marked ancestors
Andreas Müller [Thu, 22 Sep 2016 09:20:16 +0000 (11:20 +0200)]
ref #6065 fix page size and add marked ancestors

7 years agoref #6065 fix missing taxonUuid in URL
Andreas Müller [Thu, 22 Sep 2016 08:37:00 +0000 (10:37 +0200)]
ref #6065  fix missing taxonUuid in URL

7 years agoref #6065 first implementation of taxonInContext service
Andreas Müller [Wed, 21 Sep 2016 15:49:13 +0000 (17:49 +0200)]
ref #6065  first implementation of taxonInContext service

7 years agocleanup
Andreas Müller [Wed, 21 Sep 2016 15:47:07 +0000 (17:47 +0200)]
cleanup

7 years agofurther refactor FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller [Wed, 21 Sep 2016 13:11:48 +0000 (15:11 +0200)]
further refactor FindByIdentifierDTO and FindByMarkerDTO

7 years agorename FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller [Wed, 21 Sep 2016 12:48:45 +0000 (14:48 +0200)]
rename FindByIdentifierDTO and FindByMarkerDTO

7 years agoRevert "fix #6037 per batch transction commit implemented for excel imports"
Andreas Kohlbecker [Wed, 21 Sep 2016 09:24:49 +0000 (11:24 +0200)]
Revert "fix #6037 per batch transction commit implemented for excel imports"

This reverts commit 53067226137bd8528e6bc26f21edbf98aebe26a9.

7 years agoref #6066 rename childNodes to childNodesByTaxon in ClassificationController
Andreas Müller [Wed, 21 Sep 2016 08:51:19 +0000 (10:51 +0200)]
ref #6066 rename childNodes to childNodesByTaxon in ClassificationController

7 years agoref #6066 add getChildNodes to classification service
Andreas Müller [Wed, 21 Sep 2016 08:07:46 +0000 (10:07 +0200)]
ref #6066 add getChildNodes to classification service

7 years agoref #6087 adding orderINdex to TermDTO
Andreas Kohlbecker [Tue, 20 Sep 2016 15:16:00 +0000 (17:16 +0200)]
ref #6087 adding orderINdex to TermDTO

7 years agoref #6066 fix Index out of bound exception
Andreas Müller [Tue, 20 Sep 2016 11:51:45 +0000 (13:51 +0200)]
ref #6066 fix Index out of bound exception

7 years agofix #6061: search in titlecache and nomenclatural titleCache in getUuidAndAbbrevTitle...
Katja Luther [Mon, 19 Sep 2016 11:12:17 +0000 (13:12 +0200)]
fix #6061: search in titlecache and nomenclatural titleCache in getUuidAndAbbrevTitleCache

7 years agofix failing IPNI Service Test
Katja Luther [Mon, 19 Sep 2016 08:08:51 +0000 (10:08 +0200)]
fix failing IPNI Service Test

7 years agorevert tests
Andreas Müller [Sat, 17 Sep 2016 05:52:39 +0000 (07:52 +0200)]
revert tests

7 years agoIgnore service test
Andreas Müller [Sat, 17 Sep 2016 05:21:16 +0000 (07:21 +0200)]
Ignore service test

7 years agoref #6072 test missing entity in webservice
Andreas Müller [Sat, 17 Sep 2016 05:04:59 +0000 (07:04 +0200)]
ref #6072 test missing entity in webservice

7 years agoref #6072 test missing entity in webservice
Andreas Müller [Fri, 16 Sep 2016 21:18:51 +0000 (23:18 +0200)]
ref #6072 test missing entity in webservice

7 years agoref #6072 set defaults to false and hardcode includeEntity to true for debugging
Andreas Müller [Fri, 16 Sep 2016 20:35:16 +0000 (22:35 +0200)]
ref #6072 set defaults to false and hardcode includeEntity to true for debugging

7 years agoref #6072 fix signature issue in remote (2nd try)
Andreas Müller [Fri, 16 Sep 2016 17:56:48 +0000 (19:56 +0200)]
ref #6072 fix signature issue in remote (2nd try)

7 years agoref #6072 fix signature issue in remote
Andreas Müller [Fri, 16 Sep 2016 17:31:27 +0000 (19:31 +0200)]
ref #6072 fix signature issue in remote

7 years agoref #6072 fix compilation issue in IIdentifiableEntityService
Andreas Müller [Fri, 16 Sep 2016 17:03:44 +0000 (19:03 +0200)]
ref #6072 fix compilation issue in IIdentifiableEntityService

7 years agoCleanup
Andreas Müller [Fri, 16 Sep 2016 15:30:16 +0000 (17:30 +0200)]
Cleanup

7 years agofix #6072 Implement findIdentifiableEntityByMarkers
Andreas Müller [Fri, 16 Sep 2016 15:30:05 +0000 (17:30 +0200)]
fix #6072 Implement findIdentifiableEntityByMarkers

7 years agoref #6089 Remove failing irrelevant test
Andreas Müller [Thu, 15 Sep 2016 21:20:43 +0000 (23:20 +0200)]
ref #6089 Remove failing irrelevant test

7 years agoref #6089 Remove all calls and methods for taxonomicChildrenCount and taxonomicParent...
Andreas Müller [Thu, 15 Sep 2016 21:09:27 +0000 (23:09 +0200)]
ref #6089 Remove all calls and methods for taxonomicChildrenCount and taxonomicParentCache

7 years agoCleanup; Delete unnecessary test classes.
Andreas Müller [Thu, 15 Sep 2016 21:00:49 +0000 (23:00 +0200)]
Cleanup; Delete unnecessary test classes.

7 years agofix #6066 Implement doPageChildNodes with doSynonyms
Andreas Müller [Thu, 15 Sep 2016 16:13:17 +0000 (18:13 +0200)]
fix #6066 Implement doPageChildNodes with doSynonyms

7 years agoClean up
Andreas Müller [Thu, 15 Sep 2016 16:08:45 +0000 (18:08 +0200)]
Clean up

7 years agoAdapt failing test in NonViralNameParserImplTest
Andreas Müller [Thu, 15 Sep 2016 16:04:40 +0000 (18:04 +0200)]
Adapt failing test in NonViralNameParserImplTest

7 years agoref #6086 solving the problems in the java-script of the web application monitor...
Andreas Kohlbecker [Thu, 15 Sep 2016 13:33:19 +0000 (15:33 +0200)]
ref #6086 solving the problems in the java-script of the web application monitor widget:
    - chunk information: number rounded and label renamed
    - Percentage number rounding fixed

7 years agoref #6086 fix failing test
Andreas Müller [Thu, 15 Sep 2016 13:10:32 +0000 (15:10 +0200)]
ref #6086  fix failing test

7 years agorel #6086 Improve rounding for progress monitor
Andreas Müller [Thu, 15 Sep 2016 12:27:43 +0000 (14:27 +0200)]
rel #6086 Improve rounding for progress monitor

 * fix error in rounding by using round not ceil
 * add method for user defined scaled rounding

7 years agosome cleanup
Andreas Müller [Thu, 15 Sep 2016 12:21:20 +0000 (14:21 +0200)]
some cleanup

7 years agofix #5837: search on abbrevTitleCache instead of abbrev title
Katja Luther [Thu, 15 Sep 2016 08:41:47 +0000 (10:41 +0200)]
fix #5837: search on abbrevTitleCache instead of abbrev title

7 years agocorrecting erroneous commit
Andreas Kohlbecker [Wed, 14 Sep 2016 15:11:20 +0000 (17:11 +0200)]
correcting erroneous commit

7 years agogitignore
Andreas Kohlbecker [Tue, 13 Sep 2016 16:25:39 +0000 (18:25 +0200)]
gitignore

7 years agofix #4497 solving problem with status parameter in taxon search
Andreas Kohlbecker [Tue, 13 Sep 2016 14:47:51 +0000 (16:47 +0200)]
fix #4497 solving problem with status parameter in taxon search

7 years agoref #5969: add PreferenceService to applicationController
Katja Luther [Tue, 13 Sep 2016 09:48:06 +0000 (11:48 +0200)]
ref #5969: add PreferenceService to applicationController

7 years agoRemove duplicate method
Patrick Plitzner [Tue, 13 Sep 2016 05:20:19 +0000 (07:20 +0200)]
Remove duplicate method

7 years agorel #5957 improve tests for groupTaxaByHigherTaxon
Andreas Müller [Mon, 12 Sep 2016 14:42:26 +0000 (16:42 +0200)]
rel #5957 improve tests for groupTaxaByHigherTaxon

7 years agofix #5957 fix IndexOutOfBound exception and some other improvements for groupByHigher...
Andreas Müller [Mon, 12 Sep 2016 14:25:07 +0000 (16:25 +0200)]
fix #5957 fix IndexOutOfBound exception and some other improvements for groupByHigherTaxon

7 years agominor
Andreas Müller [Mon, 12 Sep 2016 14:23:04 +0000 (16:23 +0200)]
minor

7 years agobetter percentage values from Progressmonitor
Andreas Kohlbecker [Mon, 12 Sep 2016 13:28:35 +0000 (15:28 +0200)]
better percentage values from Progressmonitor

7 years agofix #6061: search for titlecache if abbrev title is empty
Katja Luther [Mon, 12 Sep 2016 12:59:36 +0000 (14:59 +0200)]
fix #6061: search for titlecache if abbrev title is empty

7 years agofix #6061: smaller changes
Katja Luther [Mon, 12 Sep 2016 12:58:18 +0000 (14:58 +0200)]
fix #6061: smaller changes

7 years agoref #6032 Remove test for rank as mentioned in ticket
Patrick Plitzner [Mon, 12 Sep 2016 11:34:56 +0000 (13:34 +0200)]
ref #6032 Remove test for rank as mentioned in ticket

7 years agoAdd Vorabdr. to parsable volume
Andreas Müller [Fri, 9 Sep 2016 14:38:03 +0000 (16:38 +0200)]
Add Vorabdr. to parsable volume

7 years agominor
Katja Luther [Fri, 9 Sep 2016 11:34:00 +0000 (13:34 +0200)]
minor

7 years agominor
Katja Luther [Fri, 9 Sep 2016 11:20:44 +0000 (13:20 +0200)]
minor

7 years agosmaller changes for importing nom. reference in normal explicit excel import
Katja Luther [Fri, 9 Sep 2016 10:58:21 +0000 (12:58 +0200)]
smaller changes for importing nom. reference in normal explicit excel import

7 years agonormal explicit excel import: add reference to name import
Katja Luther [Fri, 9 Sep 2016 10:29:41 +0000 (12:29 +0200)]
normal explicit excel import: add reference to name import

7 years agoAdd javadoc for languages
Andreas Müller [Fri, 9 Sep 2016 09:37:20 +0000 (11:37 +0200)]
Add javadoc for languages

7 years agofix #6060 parse author with -e-
Andreas Müller [Thu, 8 Sep 2016 14:51:40 +0000 (16:51 +0200)]
fix #6060 parse author with -e-

7 years agorel #6057 further improvements for authors with accent grave
Andreas Müller [Thu, 8 Sep 2016 14:39:59 +0000 (16:39 +0200)]
rel #6057 further improvements for authors with accent grave

7 years agofix #6057 Accent Graph in author parser
Andreas Müller [Thu, 8 Sep 2016 12:21:12 +0000 (14:21 +0200)]
fix #6057 Accent Graph in author parser

7 years agoref #4260 Added test for 0 parameter query
Patrick Plitzner [Thu, 8 Sep 2016 08:40:07 +0000 (10:40 +0200)]
ref #4260 Added test for 0 parameter query

7 years agoref #6045 some comments and clean up
Patrick Plitzner [Wed, 7 Sep 2016 09:11:39 +0000 (11:11 +0200)]
ref #6045 some comments and clean up

7 years agominor changes in excel import
Katja Luther [Wed, 7 Sep 2016 07:39:45 +0000 (09:39 +0200)]
minor changes in excel import

7 years agoadding missing test file for tropicos import root/branches/cdmlib/develop
Katja Luther [Tue, 6 Sep 2016 07:48:37 +0000 (09:48 +0200)]
adding missing test file for tropicos import

7 years agoextend excel import to cover simple tropicos data
Katja Luther [Sun, 4 Sep 2016 19:12:13 +0000 (21:12 +0200)]
extend excel import to cover simple tropicos data

7 years agoref #6032 test name parser support for hybrid ranks and non-hybrids
Andreas Müller [Fri, 2 Sep 2016 11:17:30 +0000 (13:17 +0200)]
ref #6032 test name parser support for hybrid ranks and non-hybrids

7 years agoref #6030 Add additional test for genus hybrid formula parsing
Andreas Müller [Fri, 2 Sep 2016 10:01:26 +0000 (12:01 +0200)]
ref #6030 Add additional test for genus hybrid formula parsing

7 years agominor
Katja Luther [Fri, 2 Sep 2016 10:37:31 +0000 (12:37 +0200)]
minor

7 years agofix #5893: set parse reference public to use it in fauna europaea import
Katja Luther [Fri, 2 Sep 2016 10:36:20 +0000 (12:36 +0200)]
fix #5893: set parse reference public to use it in fauna europaea import

7 years agofix #6030 Parse Genus hybrid formulas correctly
Andreas Müller [Fri, 2 Sep 2016 09:47:33 +0000 (11:47 +0200)]
fix #6030 Parse Genus hybrid formulas correctly

7 years agoref #6045 Add test for getAncestor()
Patrick Plitzner [Wed, 31 Aug 2016 08:36:56 +0000 (10:36 +0200)]
ref #6045 Add test for getAncestor()

7 years agofix #6045: fixing the NaturalOrderComparator and complete the test
Katja Luther [Wed, 31 Aug 2016 12:52:43 +0000 (14:52 +0200)]
fix #6045: fixing the NaturalOrderComparator and complete the test

7 years agoref #6045 Fix NPE for TaxonNaturalComparator
Patrick Plitzner [Tue, 30 Aug 2016 14:07:56 +0000 (16:07 +0200)]
ref #6045 Fix NPE for TaxonNaturalComparator
 - fix getAncestors() method of taxon node
 - added JUnit test

7 years agofix #5869 adapt implementation for reusing names or taxa with remoting
Katja Luther [Fri, 26 Aug 2016 10:36:03 +0000 (12:36 +0200)]
fix #5869 adapt implementation for reusing names or taxa with remoting

7 years agoref #5837 implement search for nomenclatural title
Katja Luther [Thu, 25 Aug 2016 08:26:02 +0000 (10:26 +0200)]
ref #5837 implement search for nomenclatural title

7 years agoref #6042 Avoid -title cache generation not implemented- for citations
Patrick Plitzner [Tue, 23 Aug 2016 13:27:46 +0000 (15:27 +0200)]
ref #6042 Avoid -title cache generation not implemented- for citations
in specimen table view

7 years agofix #5828: add abbrevTitleCache and titleCache to uuidAndTitleCache
Katja Luther [Tue, 23 Aug 2016 09:47:31 +0000 (11:47 +0200)]
fix #5828: add abbrevTitleCache and titleCache to uuidAndTitleCache

7 years agorevert the changes in representation of rank infraspecific unranked
Katja Luther [Tue, 23 Aug 2016 08:17:44 +0000 (10:17 +0200)]
revert the changes in representation of rank infraspecific unranked

7 years agoRemove @Ignore from test
Patrick Plitzner [Tue, 16 Aug 2016 07:39:05 +0000 (09:39 +0200)]
Remove @Ignore from test

7 years agoFix merge problems
Patrick Plitzner [Mon, 15 Aug 2016 13:51:28 +0000 (15:51 +0200)]
Fix merge problems

7 years agofix #6001 Clean up multiple sourceNotLinked() methods
Patrick Plitzner [Mon, 15 Aug 2016 09:13:55 +0000 (11:13 +0200)]
fix #6001 Clean up multiple sourceNotLinked() methods

7 years agoFix titlecache issues for specimen table in data portal
Patrick Plitzner [Mon, 15 Aug 2016 06:43:54 +0000 (08:43 +0200)]
Fix titlecache issues for specimen table in data portal
 - Use Link class for every link
 - Open all links in new window

7 years agosmaller changes
Katja Luther [Fri, 12 Aug 2016 08:26:38 +0000 (10:26 +0200)]
smaller changes

7 years agospecimen import changes
Katja Luther [Fri, 12 Aug 2016 07:49:53 +0000 (09:49 +0200)]
specimen import changes

7 years agoImport specimen scans with StillImage type
Patrick Plitzner [Thu, 11 Aug 2016 13:20:33 +0000 (15:20 +0200)]
Import specimen scans with StillImage type

7 years agoRemove unneccesary casts
Patrick Plitzner [Thu, 11 Aug 2016 13:19:44 +0000 (15:19 +0200)]
Remove unneccesary casts

7 years agoref #5448 Change abbreviation for unranked infraspecific rank
Patrick Plitzner [Wed, 10 Aug 2016 08:14:48 +0000 (10:14 +0200)]
ref #5448 Change abbreviation for unranked infraspecific rank