cdmlib.git
3 years agocleanup
Andreas Müller [Wed, 24 Mar 2021 15:44:35 +0000 (16:44 +0100)]
cleanup

3 years agofix #9551 and #9550 seriesPart parsing for articles (and books?) and special titles...
Andreas Müller [Wed, 24 Mar 2021 15:34:30 +0000 (16:34 +0100)]
fix #9551 and #9550  seriesPart parsing for articles (and books?) and special titles like PhytoKeys

3 years agoref #9332 adapting DTO to property change source -> designationSource
Andreas Kohlbecker [Wed, 24 Mar 2021 13:45:21 +0000 (14:45 +0100)]
ref #9332 adapting DTO to property change source -> designationSource

3 years agoref #9332 adapting further init strategies
Andreas Kohlbecker [Wed, 24 Mar 2021 13:44:38 +0000 (14:44 +0100)]
ref #9332 adapting further init strategies

3 years agofix #9550 , ref #9014 include PhytoKeys in name parser
Andreas Müller [Wed, 24 Mar 2021 13:20:00 +0000 (14:20 +0100)]
fix  #9550 , ref #9014 include PhytoKeys in name parser

3 years agocleanup
Andreas Müller [Tue, 23 Mar 2021 12:34:08 +0000 (13:34 +0100)]
cleanup

3 years agoref #9332 adapting initstrategy
Andreas Kohlbecker [Wed, 24 Mar 2021 10:22:04 +0000 (11:22 +0100)]
ref #9332 adapting initstrategy

3 years agoref #6866 fixing bug in DeterminationEventDTO
Andreas Kohlbecker [Wed, 24 Mar 2021 09:45:19 +0000 (10:45 +0100)]
ref #6866  fixing bug in DeterminationEventDTO

3 years agoref #6866 SpecimenOrObservationBaseDTO with DeterminationEventDTOs
Andreas Kohlbecker [Tue, 23 Mar 2021 16:37:12 +0000 (17:37 +0100)]
ref #6866 SpecimenOrObservationBaseDTO with DeterminationEventDTOs

3 years agoref #6866 pulling determinedNames up to SpecimenOrObservationDTO
Andreas Kohlbecker [Tue, 23 Mar 2021 15:19:24 +0000 (16:19 +0100)]
ref #6866 pulling determinedNames up to SpecimenOrObservationDTO

3 years agoref #6866 extending init strategy for sources
Andreas Kohlbecker [Tue, 23 Mar 2021 13:45:40 +0000 (14:45 +0100)]
ref #6866 extending init strategy for sources

3 years agorevert changes in TaxonNodeDto
Katja Luther [Mon, 22 Mar 2021 14:11:11 +0000 (15:11 +0100)]
revert changes in TaxonNodeDto

3 years agocleanup
Andreas Müller [Mon, 22 Mar 2021 12:10:19 +0000 (13:10 +0100)]
cleanup

3 years agoref #9327 , ref #9211 adapt some classpaths for webservice and BeanInitializer for...
Andreas Müller [Mon, 22 Mar 2021 11:56:37 +0000 (12:56 +0100)]
ref #9327 , ref #9211 adapt some classpaths for webservice and BeanInitializer for new source handling for secundum and classification.source

3 years agotoString for KeyPref
Andreas Müller [Sat, 20 Mar 2021 00:10:06 +0000 (01:10 +0100)]
toString for KeyPref

3 years agominor
Andreas Müller [Fri, 19 Mar 2021 21:38:45 +0000 (22:38 +0100)]
minor

3 years agoref #9541 utitlity method for KeyStatement
Andreas Müller [Fri, 19 Mar 2021 20:07:56 +0000 (21:07 +0100)]
ref #9541 utitlity method for KeyStatement

3 years agoref #9541 improve handling for description main objects
Andreas Müller [Fri, 19 Mar 2021 20:07:15 +0000 (21:07 +0100)]
ref #9541 improve handling for description main objects

3 years agoref #9523 fix potential NPE in homotypicGroupDto calling
Andreas Müller [Fri, 19 Mar 2021 18:39:13 +0000 (19:39 +0100)]
ref #9523 fix potential NPE in homotypicGroupDto calling

3 years agocleanup
Andreas Müller [Fri, 19 Mar 2021 18:36:07 +0000 (19:36 +0100)]
cleanup

3 years agoupdate cached model to v 5.22.0
Andreas Müller [Fri, 19 Mar 2021 12:59:41 +0000 (13:59 +0100)]
update cached model to v 5.22.0

3 years agoupdate test H2 vor v5.22.0
Andreas Müller [Fri, 19 Mar 2021 12:57:47 +0000 (13:57 +0100)]
update test H2 vor v5.22.0

3 years agoref #9322 fix the bug for deleting inverse representations in TermRemover
Andreas Müller [Fri, 19 Mar 2021 12:56:46 +0000 (13:56 +0100)]
ref #9322 fix the bug for deleting inverse representations in TermRemover

3 years agocleanup
Andreas Müller [Fri, 19 Mar 2021 12:54:07 +0000 (13:54 +0100)]
cleanup

3 years agocleanup and fix compile error related to ref #9515
Andreas Müller [Fri, 19 Mar 2021 12:28:09 +0000 (13:28 +0100)]
cleanup and fix compile error related to ref #9515

3 years agocleanup
Andreas Müller [Fri, 19 Mar 2021 12:20:07 +0000 (13:20 +0100)]
cleanup

3 years agoref #9315 move remove unused columns to the start of update script
Andreas Müller [Fri, 19 Mar 2021 12:19:32 +0000 (13:19 +0100)]
ref #9315 move remove unused columns to the start of update script

3 years agoref #9515 rename state in SpecimenImportBase to individualsAssociationDescriptionPerT...
Andreas Müller [Fri, 19 Mar 2021 11:55:34 +0000 (12:55 +0100)]
ref #9515 rename state in SpecimenImportBase to individualsAssociationDescriptionPerTaxon and cleanup

3 years agoref #9515 adding a break in the loop as we only search for the first description...
Andreas Müller [Fri, 19 Mar 2021 11:46:44 +0000 (12:46 +0100)]
ref #9515 adding a break in the loop as we only search for the first description being a specimen holding description

3 years agocleanup
Andreas Müller [Fri, 19 Mar 2021 11:45:53 +0000 (12:45 +0100)]
cleanup

3 years agoref #9211 fixing test related issues for Classification.source
Andreas Müller [Thu, 18 Mar 2021 22:36:41 +0000 (23:36 +0100)]
ref #9211 fixing test related issues for Classification.source

3 years agocleanup
Andreas Müller [Thu, 18 Mar 2021 22:25:23 +0000 (23:25 +0100)]
cleanup

3 years agocleanup
Andreas Müller [Thu, 18 Mar 2021 22:02:07 +0000 (23:02 +0100)]
cleanup

3 years agoref #9211 make Classification.reference a single source
Andreas Müller [Thu, 18 Mar 2021 22:00:53 +0000 (23:00 +0100)]
ref #9211 make Classification.reference a single source

3 years agoref #8761 fix correct handling of nomStatus setter
Andreas Müller [Thu, 18 Mar 2021 21:02:00 +0000 (22:02 +0100)]
ref #8761 fix correct handling of nomStatus setter

3 years agofix #8761 handle TaxonName -> NomenclaturalStatus link correctly
Andreas Müller [Thu, 18 Mar 2021 20:51:04 +0000 (21:51 +0100)]
fix #8761 handle TaxonName -> NomenclaturalStatus link correctly

3 years agocleanup
Andreas Müller [Thu, 18 Mar 2021 20:31:52 +0000 (21:31 +0100)]
cleanup

3 years agoref #9331 improve deb handling in Cdm2CdmImportBase
Andreas Müller [Thu, 18 Mar 2021 20:30:37 +0000 (21:30 +0100)]
ref #9331 improve deb handling in Cdm2CdmImportBase

3 years agoref #9332 adapt TypeDesignationBaseBeanProcessor to designationSource changes
Andreas Müller [Thu, 18 Mar 2021 15:08:34 +0000 (16:08 +0100)]
ref #9332 adapt TypeDesignationBaseBeanProcessor to designationSource changes

3 years agocleanup
Andreas Müller [Thu, 18 Mar 2021 15:06:05 +0000 (16:06 +0100)]
cleanup

3 years agoref #9332 adapt xml mapping to new designationSource
Andreas Müller [Thu, 18 Mar 2021 14:08:08 +0000 (15:08 +0100)]
ref #9332 adapt xml mapping to new designationSource

3 years agocleanup
Andreas Müller [Thu, 18 Mar 2021 14:05:43 +0000 (15:05 +0100)]
cleanup

3 years agoref #9332 adapt some test data and a query to new designationSource in cdmlib
Andreas Müller [Thu, 18 Mar 2021 14:05:19 +0000 (15:05 +0100)]
ref #9332 adapt some test data and a query to new designationSource in cdmlib

3 years agoref #9330 adapt testdata to removed SEP in cdmlib
Andreas Müller [Thu, 18 Mar 2021 13:18:22 +0000 (14:18 +0100)]
ref #9330 adapt testdata to removed SEP in cdmlib

3 years agoref #9332 adapt registration dao to designationSource renaming
Andreas Müller [Thu, 18 Mar 2021 13:13:23 +0000 (14:13 +0100)]
ref #9332 adapt registration dao to designationSource renaming

3 years agoref #9330 adapt testdata to removed NOR in cdmlib
Andreas Müller [Thu, 18 Mar 2021 13:06:03 +0000 (14:06 +0100)]
ref #9330 adapt testdata to removed NOR in cdmlib

3 years agocleanup
Andreas Müller [Thu, 18 Mar 2021 13:03:03 +0000 (14:03 +0100)]
cleanup

3 years agoref #9507 update test database ref integrity
Andreas Müller [Thu, 18 Mar 2021 12:46:35 +0000 (13:46 +0100)]
ref #9507 update test database ref integrity

3 years agoref #9331 update test data for new DescriptionElementSource handling
Andreas Müller [Thu, 18 Mar 2021 12:45:45 +0000 (13:45 +0100)]
ref #9331 update test data for new DescriptionElementSource handling

3 years agoref #9332 rename TypeDesignationBase.source to .designationSource in cdmlib
Andreas Müller [Thu, 18 Mar 2021 12:41:12 +0000 (13:41 +0100)]
ref #9332 rename TypeDesignationBase.source to .designationSource in cdmlib

3 years agocleanup
Andreas Müller [Thu, 18 Mar 2021 11:37:40 +0000 (12:37 +0100)]
cleanup

3 years agoref #9330 remove OriginalSourceType.nomenclaturalSource and secundumSource
Andreas Müller [Thu, 18 Mar 2021 11:37:17 +0000 (12:37 +0100)]
ref #9330 remove OriginalSourceType.nomenclaturalSource and secundumSource

3 years agocleanup
Andreas Müller [Thu, 18 Mar 2021 10:46:57 +0000 (11:46 +0100)]
cleanup

3 years agoref #9331 factory methods for NamedSource
Andreas Müller [Thu, 18 Mar 2021 10:46:42 +0000 (11:46 +0100)]
ref #9331 factory methods for NamedSource

3 years agoref #9331 correct modelling for DescElem to Source and update script for DescElemSources
Andreas Müller [Thu, 18 Mar 2021 10:46:09 +0000 (11:46 +0100)]
ref #9331 correct modelling for DescElem to Source and update script for DescElemSources

3 years agoref #9331 some final changes in model for NamedSourceBase et al.
Andreas Müller [Thu, 18 Mar 2021 08:44:41 +0000 (09:44 +0100)]
ref #9331 some final changes in model for NamedSourceBase et al.

3 years agomake Cdm2CdmImportBase compiling again
Andreas Müller [Thu, 18 Mar 2021 08:43:45 +0000 (09:43 +0100)]
make Cdm2CdmImportBase compiling again

3 years agominor
Andreas Müller [Thu, 18 Mar 2021 01:22:38 +0000 (02:22 +0100)]
minor

3 years agoref #9507 add ratioToStructure to test schema
Andreas Müller [Thu, 18 Mar 2021 01:22:17 +0000 (02:22 +0100)]
ref #9507 add ratioToStructure to test schema

3 years agocleanup
Andreas Müller [Thu, 18 Mar 2021 01:21:23 +0000 (02:21 +0100)]
cleanup

3 years agoref #9331 add NamedSource and NamedSourceBase and use it, SecundumSource inherits...
Andreas Müller [Thu, 18 Mar 2021 01:12:53 +0000 (02:12 +0100)]
ref #9331 add NamedSource and NamedSourceBase and use it, SecundumSource inherits from NamedSource

3 years agoref #9331 remove generics from OriginalSourceBase
Andreas Müller [Wed, 17 Mar 2021 21:53:56 +0000 (22:53 +0100)]
ref #9331 remove generics from OriginalSourceBase

3 years agoref #9507 add ratioToStructure to Character
Andreas Müller [Wed, 17 Mar 2021 21:29:54 +0000 (22:29 +0100)]
ref #9507 add ratioToStructure to Character

3 years agochange CDM version to 5.22.0
Andreas Müller [Wed, 17 Mar 2021 21:29:10 +0000 (22:29 +0100)]
change CDM version to 5.22.0

3 years agoref #9327 fix update script for secundum handling and add data in FullCoverageDataGen...
Andreas Müller [Wed, 17 Mar 2021 21:28:04 +0000 (22:28 +0100)]
ref #9327 fix update script for secundum handling and add data in FullCoverageDataGenerator

3 years agofix #9315 remove old single source columns via update script
Andreas Müller [Wed, 17 Mar 2021 20:26:33 +0000 (21:26 +0100)]
fix #9315 remove old single source columns via update script

3 years agocleanup
Andreas Müller [Wed, 17 Mar 2021 20:25:50 +0000 (21:25 +0100)]
cleanup

3 years agoref #9327 update script updated and some further test and propertyPath adaptations
Andreas Müller [Wed, 17 Mar 2021 20:25:25 +0000 (21:25 +0100)]
ref #9327 update script updated and some further test and propertyPath adaptations

3 years agoref #6696 remove getNextUpdater()
Andreas Müller [Wed, 17 Mar 2021 20:14:47 +0000 (21:14 +0100)]
ref #6696 remove getNextUpdater()

3 years agocleanup
Andreas Müller [Wed, 17 Mar 2021 15:29:55 +0000 (16:29 +0100)]
cleanup

3 years agoref #9327 add erronously deleted line
Andreas Müller [Wed, 17 Mar 2021 14:37:44 +0000 (15:37 +0100)]
ref #9327 add erronously deleted line

3 years agoref #9327 remove saveNewTaxonNode()
Andreas Müller [Tue, 16 Mar 2021 21:41:37 +0000 (22:41 +0100)]
ref #9327 remove saveNewTaxonNode()

3 years agocleanup
Andreas Müller [Tue, 16 Mar 2021 21:40:59 +0000 (22:40 +0100)]
cleanup

3 years agoref #9327 fix tests in persistence and service layer
Andreas Müller [Tue, 16 Mar 2021 21:39:56 +0000 (22:39 +0100)]
ref #9327 fix tests in persistence and service layer

3 years agocleanup
Andreas Müller [Tue, 16 Mar 2021 18:48:41 +0000 (19:48 +0100)]
cleanup

3 years agoref #9327 add sec source to TaxonBase (with few open issues)
Andreas Müller [Mon, 15 Mar 2021 22:27:14 +0000 (23:27 +0100)]
ref #9327 add sec source to TaxonBase (with few open issues)

3 years agocleanup
Andreas Müller [Mon, 15 Mar 2021 22:19:15 +0000 (23:19 +0100)]
cleanup

3 years agoref #9523: add homotypic synonym secundum informations to TaxonNodeDto, create homoty...
Katja Luther [Fri, 19 Mar 2021 10:54:16 +0000 (11:54 +0100)]
ref #9523: add homotypic synonym secundum informations to TaxonNodeDto, create homotypicalGroupDto

3 years agoabstract EventDTO and cleaning up DerivationEventDTO - part 3
Andreas Kohlbecker [Thu, 18 Mar 2021 14:37:52 +0000 (15:37 +0100)]
abstract EventDTO and cleaning up DerivationEventDTO - part 3

3 years agoabstract EventDTO and cleaning up DerivationEventDTO - part 2
Andreas Kohlbecker [Thu, 18 Mar 2021 14:37:18 +0000 (15:37 +0100)]
abstract EventDTO and cleaning up DerivationEventDTO - part 2

3 years agoabstract EventDTO and cleaning up DerivationEventDTO
Andreas Kohlbecker [Thu, 18 Mar 2021 13:55:20 +0000 (14:55 +0100)]
abstract EventDTO and cleaning up DerivationEventDTO

3 years agopushing propertied from SpecimenOrObservationDTO to DerivedUnitDTO
Andreas Kohlbecker [Thu, 18 Mar 2021 11:12:16 +0000 (12:12 +0100)]
pushing propertied from SpecimenOrObservationDTO to DerivedUnitDTO

3 years agofix #9515: adapt AbcdImport to Descriptiontype.IndividualAssociations
Katja Luther [Thu, 18 Mar 2021 08:59:46 +0000 (09:59 +0100)]
fix #9515: adapt AbcdImport to Descriptiontype.IndividualAssociations

3 years agoref #7599 ref #6866 adding missing SpecimenOrObservationDTO details
Andreas Kohlbecker [Wed, 17 Mar 2021 16:45:33 +0000 (17:45 +0100)]
ref #7599 ref #6866 adding missing SpecimenOrObservationDTO details

3 years agoref #9535 keyterm message_L10n to representation_L10n
Andreas Kohlbecker [Wed, 17 Mar 2021 16:44:13 +0000 (17:44 +0100)]
ref #9535 keyterm message_L10n to representation_L10n

3 years agoref #7599 gathering date in GatheringDTO
Andreas Kohlbecker [Tue, 16 Mar 2021 12:30:42 +0000 (13:30 +0100)]
ref #7599 gathering date in GatheringDTO

3 years agoref #9531: add original spelling to NameDeleteConfig and adapt handling in delete
Katja Luther [Tue, 16 Mar 2021 11:09:23 +0000 (12:09 +0100)]
ref #9531: add original spelling to NameDeleteConfig and adapt handling in delete

3 years agoref #9327 add first version of update script for v5.22 with update for secSource
Andreas Müller [Mon, 15 Mar 2021 21:06:32 +0000 (22:06 +0100)]
ref #9327 add first version of update script for v5.22 with update for secSource

3 years agofix NPE in cdmlightexport
Katja Luther [Mon, 15 Mar 2021 07:46:54 +0000 (08:46 +0100)]
fix NPE in cdmlightexport

3 years agofix #9529 correct separation for bibliographic in-references
Andreas Müller [Sat, 13 Mar 2021 03:34:27 +0000 (04:34 +0100)]
fix #9529 correct separation for bibliographic in-references

3 years agochange removeTrailingDot to removeTrailingDots
Andreas Müller [Sat, 13 Mar 2021 02:58:24 +0000 (03:58 +0100)]
change removeTrailingDot to removeTrailingDots

3 years agocleanup
Andreas Müller [Sat, 13 Mar 2021 01:26:34 +0000 (02:26 +0100)]
cleanup

3 years agoChange name of AlphabeticallyAscendingNamedAreaComparator to AscendingNamedAreaCompa...
Andreas Müller [Fri, 12 Mar 2021 11:30:11 +0000 (12:30 +0100)]
Change name of AlphabeticallyAscendingNamedAreaComparator  to AscendingNamedAreaComparator as it is not alpabetically

3 years agoref #9526
Andreas Müller [Fri, 12 Mar 2021 11:06:17 +0000 (12:06 +0100)]
ref #9526

3 years agofix missing space in homotypic group string
Katja Luther [Fri, 12 Mar 2021 09:36:06 +0000 (10:36 +0100)]
fix missing space in homotypic group string

3 years agomove test resources for util package tests
Andreas Müller [Thu, 11 Mar 2021 12:28:56 +0000 (13:28 +0100)]
move test resources for util package tests

3 years agoCleanup
Andreas Müller [Thu, 11 Mar 2021 12:10:24 +0000 (13:10 +0100)]
Cleanup

3 years agomove CacheUpdater and SortIndexUpdaterWrapper to service.longrunning
Andreas Müller [Thu, 11 Mar 2021 12:07:32 +0000 (13:07 +0100)]
move CacheUpdater and SortIndexUpdaterWrapper to service.longrunning

3 years agofix issue related to combine service-layer utility packages
Andreas Müller [Thu, 11 Mar 2021 11:32:52 +0000 (12:32 +0100)]
fix issue related to combine service-layer utility packages

3 years agocleanup
Andreas Müller [Thu, 11 Mar 2021 11:29:54 +0000 (12:29 +0100)]
cleanup