Patrick Plitzner [Tue, 17 Sep 2019 08:21:49 +0000 (10:21 +0200)]
Fix potential NPE
Patrick Plitzner [Mon, 16 Sep 2019 11:29:17 +0000 (13:29 +0200)]
ref #8450 Fix potential mysql syntax exception
Patrick Plitzner [Mon, 16 Sep 2019 08:33:02 +0000 (10:33 +0200)]
Revert "Use only aggregated taxon descriptions for key generation"
This reverts commit
d6567bcdd0ad9fc7768b7ab85be7f09386c05c6b.
pplitzner [Mon, 16 Sep 2019 07:32:54 +0000 (09:32 +0200)]
ref #8450 Load supported categorical states in service layer
Katja Luther [Mon, 16 Sep 2019 07:08:20 +0000 (09:08 +0200)]
ref #8489: PreferencePredicate update
pplitzner [Mon, 16 Sep 2019 06:46:40 +0000 (08:46 +0200)]
ref #8450 Delete association taxon description when deleting specimen
pplitzner [Sun, 15 Sep 2019 13:55:07 +0000 (15:55 +0200)]
Add missing classes to PermissonClass
pplitzner [Sun, 15 Sep 2019 13:54:52 +0000 (15:54 +0200)]
Use only aggregated taxon descriptions for key generation
pplitzner [Sun, 15 Sep 2019 13:49:50 +0000 (15:49 +0200)]
ref #8539 Set data set for aggregation
pplitzner [Sun, 15 Sep 2019 12:20:20 +0000 (14:20 +0200)]
Fix potential NPE
pplitzner [Sun, 15 Sep 2019 10:20:07 +0000 (12:20 +0200)]
ref #8539 Add specimens to matrix as long running task
Katja Luther [Fri, 13 Sep 2019 09:02:22 +0000 (11:02 +0200)]
ref #8385: methods for better voc selection pref pages
Patrick Plitzner [Thu, 12 Sep 2019 10:08:06 +0000 (12:08 +0200)]
ref #8539 Performance and session handling fixes
Patrick Plitzner [Wed, 11 Sep 2019 14:38:55 +0000 (16:38 +0200)]
ref #8539 Add taxon description to wrapper
Patrick Plitzner [Wed, 11 Sep 2019 14:38:34 +0000 (16:38 +0200)]
ref #8539 Filter aggregated, literature or default descriptions
Katja Luther [Thu, 12 Sep 2019 11:43:43 +0000 (13:43 +0200)]
ref #8350: create new predicate for namedArea search by abbreviation
Andreas Müller [Thu, 12 Sep 2019 08:29:01 +0000 (10:29 +0200)]
cleanup
Andreas Kohlbecker [Wed, 11 Sep 2019 14:29:39 +0000 (16:29 +0200)]
adding annotations endpoint to TypeDesignationController
Andreas Kohlbecker [Wed, 11 Sep 2019 13:49:57 +0000 (15:49 +0200)]
ref #8538 initalization of type designation sources
Patrick Plitzner [Wed, 11 Sep 2019 09:49:17 +0000 (11:49 +0200)]
ref #8539 Add new DescriptionType for IndividualsAssociations
Patrick Plitzner [Wed, 11 Sep 2019 07:17:34 +0000 (09:17 +0200)]
ref #8450 Add recordBasis and isIndividualsAssociation to wrapper
Andreas Müller [Wed, 11 Sep 2019 11:05:27 +0000 (13:05 +0200)]
cleanup
Andreas Kohlbecker [Wed, 11 Sep 2019 10:53:14 +0000 (12:53 +0200)]
fix #8538 serialization of TextualTypeDesignation.text as text_l10 implemented in TypeDesignationBaseBeanProcessor and fixing minor probelms related to AbstractModifiableThingBeanProcessor
Katja Luther [Wed, 11 Sep 2019 08:21:17 +0000 (10:21 +0200)]
ref #8526: fix failing test in editor
Katja Luther [Wed, 11 Sep 2019 07:30:46 +0000 (09:30 +0200)]
ref #8526: fix failing test
Katja Luther [Tue, 10 Sep 2019 19:22:40 +0000 (21:22 +0200)]
ref #8526: fix swap syn and acc taxon in service method
Katja Luther [Tue, 10 Sep 2019 11:15:45 +0000 (13:15 +0200)]
ref #8526: fix swap syn and acc taxon in service method
Katja Luther [Tue, 10 Sep 2019 10:05:28 +0000 (12:05 +0200)]
ref #8533: check for all fields in gatheringEvent whether it is set already
Andreas Kohlbecker [Fri, 6 Sep 2019 19:36:28 +0000 (21:36 +0200)]
ref #8398 adding codeEdition to NameRelationship constructors and to related add* methods in TaxonName and some more
Patrick Plitzner [Fri, 6 Sep 2019 11:13:01 +0000 (13:13 +0200)]
ref #8248 Create State when termType is STATE
Patrick Plitzner [Fri, 6 Sep 2019 07:36:29 +0000 (09:36 +0200)]
Revert "Add flag for associating the ABCD unit with the field unit"
This reverts commit
55b1bb529f2938de88202fd3b51447cab3cc5b58.
Patrick Plitzner [Thu, 5 Sep 2019 07:38:29 +0000 (09:38 +0200)]
ref #8248 Fix lazy loading problems for OWL import
Patrick Plitzner [Wed, 4 Sep 2019 08:28:53 +0000 (10:28 +0200)]
Add flag for associating the ABCD unit with the field unit
Andreas Müller [Fri, 6 Sep 2019 07:40:37 +0000 (09:40 +0200)]
ref #1444, ref #8509 improve ZoologicalNameCacheStrategy for infraspecific ranks not being subspecies
Andreas Müller [Fri, 6 Sep 2019 06:12:57 +0000 (08:12 +0200)]
add Vlaans to Language uuids
Andreas Müller [Fri, 6 Sep 2019 06:12:25 +0000 (08:12 +0200)]
ref #1444, ref #8509 improve ZoologicalNameCacheStrategy for infraspecific ranks not being subspecies
Andreas Müller [Thu, 5 Sep 2019 21:43:35 +0000 (23:43 +0200)]
cleanup
Andreas Müller [Thu, 5 Sep 2019 21:32:06 +0000 (23:32 +0200)]
ref #1444, ref #8509 fix lastAction handling for ERMS
Andreas Müller [Thu, 5 Sep 2019 21:30:47 +0000 (23:30 +0200)]
cleanup and remove ITaxonNameBase.getNomenclaturalCode
Andreas Müller [Thu, 5 Sep 2019 21:21:54 +0000 (23:21 +0200)]
rename TaxonNameDefaultCacheStrategyTest
Andreas Kohlbecker [Thu, 5 Sep 2019 14:01:34 +0000 (16:01 +0200)]
fix #8519 adding ROLE_USER_MANAGER to FirstDataInserter
Andreas Kohlbecker [Wed, 4 Sep 2019 12:38:46 +0000 (14:38 +0200)]
ref #8505 adapting ApplicationConfiguration
Andreas Kohlbecker [Wed, 4 Sep 2019 09:56:42 +0000 (11:56 +0200)]
ref #8517 DerivedUnitFacadeCacheStrategy handling protected FieldUnit title caches correctly
Andreas Kohlbecker [Wed, 4 Sep 2019 08:33:49 +0000 (10:33 +0200)]
ref #8505 removing test code
Andreas Kohlbecker [Wed, 4 Sep 2019 08:31:28 +0000 (10:31 +0200)]
ref #8505 making getCdmHomeSubDirFallback() static again
Andreas Müller [Wed, 4 Sep 2019 00:26:58 +0000 (02:26 +0200)]
ref #1444, ref #8509 fix problems in TimePeriod mapping and toXXX method
Andreas Müller [Wed, 4 Sep 2019 00:26:12 +0000 (02:26 +0200)]
ref #1444, ref #8509 add last action mapping
Andreas Müller [Wed, 4 Sep 2019 00:25:13 +0000 (02:25 +0200)]
ref #1444, ref #8509 add DOI mapper
Andreas Müller [Wed, 4 Sep 2019 00:24:46 +0000 (02:24 +0200)]
ref #1444, ref #8509 better handling of trim in mappers
Andreas Müller [Wed, 4 Sep 2019 00:22:36 +0000 (02:22 +0200)]
cleanup
Andreas Müller [Mon, 2 Sep 2019 15:30:33 +0000 (17:30 +0200)]
minor
Andreas Kohlbecker [Tue, 3 Sep 2019 14:09:27 +0000 (16:09 +0200)]
fix #8513 removing MUST-EXIST file and getResourceFolderSeperator() method
Andreas Kohlbecker [Tue, 3 Sep 2019 13:29:26 +0000 (15:29 +0200)]
ref #8505 renaming method to getResourceFolderSeperator() and adapting documentation
Andreas Kohlbecker [Tue, 3 Sep 2019 13:12:29 +0000 (15:12 +0200)]
fix #8505 turning statical methods of ConfigFileUtil into non statical bean methods
Andreas Müller [Mon, 2 Sep 2019 14:45:45 +0000 (16:45 +0200)]
ref #1444 Add TimePeriodMapper for Referece.year import
Andreas Müller [Mon, 2 Sep 2019 14:44:10 +0000 (16:44 +0200)]
cleanup
pplitzner [Fri, 30 Aug 2019 13:39:49 +0000 (15:39 +0200)]
ref #8488 Recurse sub types of term types
Andreas Müller [Sun, 1 Sep 2019 22:13:42 +0000 (00:13 +0200)]
fix compile error
Andreas Müller [Sun, 1 Sep 2019 21:06:19 +0000 (23:06 +0200)]
Exception handling in DbSingleAttributeExportMapperBase
Andreas Müller [Sun, 1 Sep 2019 17:06:44 +0000 (19:06 +0200)]
minor
Andreas Müller [Sun, 1 Sep 2019 15:52:43 +0000 (17:52 +0200)]
ref #8508 add uniqueResult methods to Source
Andreas Müller [Sun, 1 Sep 2019 15:49:34 +0000 (17:49 +0200)]
ref #1444 add some ISO 639-3 languages for ERMS import
Andreas Müller [Sun, 1 Sep 2019 15:48:17 +0000 (17:48 +0200)]
error handling in Language csv reading
Andreas Müller [Sun, 1 Sep 2019 15:47:28 +0000 (17:47 +0200)]
cleanup and add new TermVocabulary.NewInstance method
Andreas Müller [Sat, 31 Aug 2019 12:47:39 +0000 (14:47 +0200)]
ref #1444 handle truncated source.name (reference.titleCache)
Andreas Müller [Sat, 31 Aug 2019 12:27:14 +0000 (14:27 +0200)]
cleanup
Andreas Müller [Fri, 30 Aug 2019 14:35:22 +0000 (16:35 +0200)]
remove deprecated listRankSpecificRootNodes
jenkins [Thu, 29 Aug 2019 16:35:01 +0000 (18:35 +0200)]
Updating develop poms back to pre merge state
jenkins [Thu, 29 Aug 2019 16:35:00 +0000 (18:35 +0200)]
Merge branch 'master' into develop
jenkins [Thu, 29 Aug 2019 16:34:59 +0000 (18:34 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 29 Aug 2019 16:34:55 +0000 (18:34 +0200)]
Merge branch 'release/5.9.0'
jenkins [Thu, 29 Aug 2019 16:17:06 +0000 (18:17 +0200)]
updating poms for branch'release/5.9.0' with non-snapshot versions
jenkins [Thu, 29 Aug 2019 14:11:25 +0000 (16:11 +0200)]
updating poms for 5.10.0-SNAPSHOT development
Patrick Plitzner [Thu, 29 Aug 2019 14:06:52 +0000 (16:06 +0200)]
ref #8248 Minor fixes for session saving
Andreas Müller [Thu, 29 Aug 2019 13:04:58 +0000 (15:04 +0200)]
ref #8441 remove cascading from FeatureState.feature and .state
Katja Luther [Thu, 29 Aug 2019 08:58:28 +0000 (10:58 +0200)]
avoid NPE in abcd import
Katja Luther [Thu, 29 Aug 2019 08:52:37 +0000 (10:52 +0200)]
smaller issues in Abcd import
Patrick Plitzner [Thu, 29 Aug 2019 07:11:44 +0000 (09:11 +0200)]
ref #8248 Check existing feature/state of FeatureState during import
Patrick Plitzner [Thu, 29 Aug 2019 07:10:43 +0000 (09:10 +0200)]
ref #8248 Adapt to new term node service
Patrick Plitzner [Wed, 28 Aug 2019 14:46:22 +0000 (16:46 +0200)]
ref #8248 Fix import of character structure and property
Katja Luther [Wed, 28 Aug 2019 13:25:28 +0000 (15:25 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Wed, 28 Aug 2019 13:24:04 +0000 (15:24 +0200)]
SpecimenTypeDesignation representations for names
Patrick Plitzner [Wed, 28 Aug 2019 12:53:09 +0000 (14:53 +0200)]
ref #8248 Import applicability feature states
Patrick Plitzner [Wed, 28 Aug 2019 10:57:28 +0000 (12:57 +0200)]
ref #6774 export feature states
Patrick Plitzner [Wed, 28 Aug 2019 10:14:44 +0000 (12:14 +0200)]
ref #6794 Fix endless loop in OWL export
Patrick Plitzner [Wed, 28 Aug 2019 09:33:00 +0000 (11:33 +0200)]
ref #6794 Add progress monitor break point
Patrick Plitzner [Wed, 28 Aug 2019 09:32:46 +0000 (11:32 +0200)]
ref #6794 Fix potential ClassCastException
Katja Luther [Wed, 28 Aug 2019 07:17:01 +0000 (09:17 +0200)]
adapt cdm light column names
Andreas Müller [Wed, 28 Aug 2019 00:06:09 +0000 (02:06 +0200)]
fix NPE in setNomenclaturalSource
Andreas Müller [Wed, 28 Aug 2019 00:05:45 +0000 (02:05 +0200)]
revert JAXB issues on NamedArea
Andreas Müller [Wed, 28 Aug 2019 00:05:25 +0000 (02:05 +0200)]
cleanup
Andreas Müller [Tue, 27 Aug 2019 23:43:04 +0000 (01:43 +0200)]
remove redundant JAXB parameters from NamedArea
Andreas Müller [Tue, 27 Aug 2019 23:42:19 +0000 (01:42 +0200)]
ref #8479 add listUUIDs method
Andreas Müller [Tue, 27 Aug 2019 23:41:49 +0000 (01:41 +0200)]
cleanup
Andreas Müller [Tue, 27 Aug 2019 14:36:07 +0000 (16:36 +0200)]
improved logging for TaxonNode with missing sortIndex
Andreas Müller [Tue, 27 Aug 2019 14:35:37 +0000 (16:35 +0200)]
ref #8479 propertyPaths fix for TermVocabulary
Andreas Müller [Tue, 27 Aug 2019 14:32:45 +0000 (16:32 +0200)]
ref #8479 add concurrency, TaxonNodeOutStreamPartitionerConcurrent
Andreas Müller [Tue, 27 Aug 2019 14:26:24 +0000 (16:26 +0200)]
ref #8479 ordering for taxon nodes implemented in TaxonNodeFilter and in loadById
Andreas Müller [Tue, 27 Aug 2019 13:28:00 +0000 (15:28 +0200)]
ref #8479 propertyPaths for TaxonNodeOutStreamPartitioner and introduce interface ITaxonNodeOutStreamPartitioner
Andreas Müller [Tue, 27 Aug 2019 13:02:19 +0000 (15:02 +0200)]
minor