cdmlib.git
13 months agocleanup
Andreas Müller [Mon, 26 Jun 2023 09:05:12 +0000 (11:05 +0200)]
cleanup

13 months agoref #9771 fix Character.propertey and .ratioToStructure handling
Andreas Müller [Mon, 26 Jun 2023 09:04:21 +0000 (11:04 +0200)]
ref #9771 fix Character.propertey and .ratioToStructure handling

13 months agoref #10318: add missing base class
Katja Luther [Fri, 23 Jun 2023 15:09:20 +0000 (17:09 +0200)]
ref #10318: add missing base class

13 months agoref #10318: code cleaning and add updated informations to dtos
Katja Luther [Fri, 23 Jun 2023 14:39:39 +0000 (16:39 +0200)]
ref #10318: code cleaning and add updated informations to dtos

13 months agofix #10358 disable supportsTextData for Characters
Andreas Müller [Fri, 23 Jun 2023 10:52:40 +0000 (12:52 +0200)]
fix #10358 disable supportsTextData for Characters

13 months agoref #10318: add created and createdBy to Dtos
Katja Luther [Fri, 23 Jun 2023 09:55:49 +0000 (11:55 +0200)]
ref #10318: add created and createdBy to Dtos

13 months agoref #9771 add delete option for created and updated
Andreas Müller [Thu, 22 Jun 2023 21:26:44 +0000 (23:26 +0200)]
ref #9771 add delete option for created and updated

13 months agoref #9771 add handling for externally managed
Andreas Müller [Thu, 22 Jun 2023 21:25:45 +0000 (23:25 +0200)]
ref #9771 add handling for externally managed

13 months agoref #10357: check whether synonym belongs to the actual accepted taxon
Katja Luther [Thu, 22 Jun 2023 11:51:07 +0000 (13:51 +0200)]
ref #10357: check whether synonym belongs to the actual accepted taxon

13 months agoref #10322 add originalInfo to sourceDto
Andreas Müller [Wed, 21 Jun 2023 20:41:52 +0000 (22:41 +0200)]
ref #10322 add originalInfo to sourceDto

13 months agocode cleaning
Katja Luther [Wed, 21 Jun 2023 11:56:02 +0000 (13:56 +0200)]
code cleaning

13 months agocode cleaning
Katja Luther [Wed, 21 Jun 2023 11:22:23 +0000 (13:22 +0200)]
code cleaning

13 months agoref #9771 handle incomplete vocabularies during graph import
Andreas Müller [Wed, 21 Jun 2023 08:07:18 +0000 (10:07 +0200)]
ref #9771 handle incomplete vocabularies during graph import

13 months agoref #9771 add Character handling (cont.)
Andreas Müller [Wed, 21 Jun 2023 07:42:13 +0000 (09:42 +0200)]
ref #9771 add Character handling (cont.)

13 months agocleanup
Andreas Müller [Tue, 20 Jun 2023 18:34:43 +0000 (20:34 +0200)]
cleanup

13 months agoref #9771 add Character handling
Andreas Müller [Tue, 20 Jun 2023 18:34:20 +0000 (20:34 +0200)]
ref #9771 add Character handling

13 months agoref #10322 add referenceUuid to SourceDto
Andreas Müller [Tue, 20 Jun 2023 17:09:41 +0000 (19:09 +0200)]
ref #10322 add referenceUuid to SourceDto

13 months agoref #9771 remove flush for saveAll and saveOrUpdateAll
Andreas Müller [Tue, 20 Jun 2023 14:36:15 +0000 (16:36 +0200)]
ref #9771 remove flush for saveAll and saveOrUpdateAll

13 months agoref #9771, ref #10133 add state term lists to ontology vocabulary
Andreas Müller [Tue, 20 Jun 2023 14:35:24 +0000 (16:35 +0200)]
ref #9771, ref #10133 add state term lists to ontology vocabulary

13 months agoref #10320, ref #9771 fixes for Cdm2CdmImportBase
Andreas Müller [Tue, 20 Jun 2023 14:34:16 +0000 (16:34 +0200)]
ref #10320, ref #9771 fixes for Cdm2CdmImportBase

13 months agocleanup
Andreas Müller [Tue, 20 Jun 2023 13:44:19 +0000 (15:44 +0200)]
cleanup

13 months agoRevert "Revert "ref #10322 by default use distribution treeDto""
Andreas Müller [Mon, 19 Jun 2023 13:51:53 +0000 (15:51 +0200)]
Revert "Revert "ref #10322 by default use distribution treeDto""

This reverts commit 9d0e7f1b638ba62b1d89a803f53881651b4fa888.

13 months agoref #10178: query only genus, returns all species
Belen Escobari [Mon, 19 Jun 2023 12:55:13 +0000 (14:55 +0200)]
ref #10178: query only genus, returns all species

13 months agoref #10178: Tests "not exact matches"
Belen Escobari [Mon, 19 Jun 2023 09:24:18 +0000 (11:24 +0200)]
ref #10178: Tests "not exact matches"

13 months agoref #10178: fuzzy name searching without Authors
Belen Escobari [Mon, 19 Jun 2023 08:23:07 +0000 (10:23 +0200)]
ref #10178: fuzzy name searching without Authors

13 months agoafter reverting the last commit, add the actual changes again.
Katja Luther [Thu, 15 Jun 2023 08:48:52 +0000 (10:48 +0200)]
after reverting the last commit, add the actual changes again.

13 months agoRevert "remove unreachable code"
Katja Luther [Thu, 15 Jun 2023 08:44:32 +0000 (10:44 +0200)]
Revert "remove unreachable code"

This reverts commit e173c7df9be281cf0ae131161e83587f7a3d0132.

13 months agoUpdating develop poms back to pre merge state
jenkins [Wed, 14 Jun 2023 15:24:35 +0000 (17:24 +0200)]
Updating develop poms back to pre merge state

13 months agoMerge branch 'master' into develop
jenkins [Wed, 14 Jun 2023 15:24:33 +0000 (17:24 +0200)]
Merge branch 'master' into develop

13 months agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 14 Jun 2023 15:24:32 +0000 (17:24 +0200)]
updating develop poms to master versions to avoid merge conflicts

13 months agoMerge branch 'release/5.39.0' 5.39.0
jenkins [Wed, 14 Jun 2023 15:24:26 +0000 (17:24 +0200)]
Merge branch 'release/5.39.0'

13 months agoupdating poms for branch'release/5.39.0' with non-snapshot versions
jenkins [Wed, 14 Jun 2023 15:12:17 +0000 (17:12 +0200)]
updating poms for branch'release/5.39.0' with non-snapshot versions

13 months agoupdating poms for 5.40.0-SNAPSHOT development
jenkins [Wed, 14 Jun 2023 14:58:37 +0000 (16:58 +0200)]
updating poms for 5.40.0-SNAPSHOT development

13 months agoRevert "ref #10322 by default use distribution treeDto" origin/release/5.39.0
Andreas Müller [Wed, 14 Jun 2023 11:14:06 +0000 (13:14 +0200)]
Revert "ref #10322 by default use distribution treeDto"

This reverts commit 2e46c8021c5ce6276203860af3f9e1652c4759b9.

13 months agoref #9502 remove tests without value (computed marker)
Andreas Müller [Wed, 14 Jun 2023 08:44:09 +0000 (10:44 +0200)]
ref #9502 remove tests without value (computed marker)

13 months agoref #9502 try to implement multiple parents for CondensedDistributionComposer (fix...
Andreas Müller [Wed, 14 Jun 2023 00:37:14 +0000 (02:37 +0200)]
ref #9502 try to implement multiple parents for CondensedDistributionComposer (fix Cuba tests and some cleanup)

13 months agoref #9502 fix handling for multiple parents in distribution filter (continue fix)
Andreas Müller [Wed, 14 Jun 2023 00:15:23 +0000 (02:15 +0200)]
ref #9502 fix handling for multiple parents in distribution filter (continue fix)

13 months agoref #9502 try to implement multiple parents for CondensedDistributionComposer (still...
Andreas Müller [Wed, 14 Jun 2023 00:00:06 +0000 (02:00 +0200)]
ref #9502 try to implement multiple parents for CondensedDistributionComposer (still needs cleanup)

13 months agoref #9502 fix handling for multiple parents in distribution filter (try to fix test)
Andreas Müller [Tue, 13 Jun 2023 23:58:20 +0000 (01:58 +0200)]
ref #9502 fix handling for multiple parents in distribution filter (try to fix test)

13 months agocleanup
Andreas Müller [Tue, 13 Jun 2023 15:16:44 +0000 (17:16 +0200)]
cleanup

13 months agocleanup
Andreas Müller [Tue, 13 Jun 2023 10:35:06 +0000 (12:35 +0200)]
cleanup

13 months agoref #9502 fix handling for multiple parents in distribution filter
Andreas Müller [Tue, 13 Jun 2023 10:34:49 +0000 (12:34 +0200)]
ref #9502 fix handling for multiple parents in distribution filter

13 months agoref #9502 add second method for loading distribution tree based on term tree (incl...
Andreas Müller [Tue, 13 Jun 2023 08:45:38 +0000 (10:45 +0200)]
ref #9502 add second method for loading distribution tree based on term tree (incl. annotations) - fix NPE

13 months agoref #9502 add second method for loading distribution tree based on term tree (incl...
Andreas Müller [Tue, 13 Jun 2023 08:13:53 +0000 (10:13 +0200)]
ref #9502 add second method for loading distribution tree based on term tree (incl. annotations)

13 months agoAllow retrieving a map for terms included in a term tree
Andreas Müller [Tue, 13 Jun 2023 07:55:55 +0000 (09:55 +0200)]
Allow retrieving a map for terms included in a term tree

13 months agoref #10346, ref #10327 fine tuning for IUCN cond distr str for subarea handling
Andreas Müller [Tue, 13 Jun 2023 07:41:22 +0000 (09:41 +0200)]
ref #10346, ref #10327 fine tuning for IUCN cond distr str for subarea handling

13 months agocleanup
Andreas Müller [Mon, 12 Jun 2023 20:54:01 +0000 (22:54 +0200)]
cleanup

13 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 17:31:17 +0000 (19:31 +0200)]
cleanup

13 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 17:31:17 +0000 (19:31 +0200)]
cleanup

13 months agoremove unreachable code
Katja Luther [Mon, 12 Jun 2023 07:50:26 +0000 (09:50 +0200)]
remove unreachable code

13 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 17:26:13 +0000 (19:26 +0200)]
cleanup

13 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 15:40:14 +0000 (17:40 +0200)]
cleanup

13 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 09:17:13 +0000 (11:17 +0200)]
cleanup

13 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 08:35:50 +0000 (10:35 +0200)]
cleanup

13 months agoref #10335 fix NPE in TermNodeDto
Andreas Müller [Sat, 10 Jun 2023 08:34:06 +0000 (10:34 +0200)]
ref #10335 fix NPE in TermNodeDto

13 months agoref #10326 javadoc and further tests
Andreas Müller [Fri, 9 Jun 2023 22:26:46 +0000 (00:26 +0200)]
ref #10326 javadoc and further tests

13 months agoref #10326 try to fix incorrect alternativeRootArea handling
Andreas Müller [Fri, 9 Jun 2023 21:48:02 +0000 (23:48 +0200)]
ref #10326 try to fix incorrect alternativeRootArea handling

13 months agocleanup
Andreas Müller [Fri, 9 Jun 2023 20:29:10 +0000 (22:29 +0200)]
cleanup

13 months agoref #10326 add alternativeRootNodeMarkerType uuid to MarkerType
Andreas Müller [Fri, 9 Jun 2023 20:28:30 +0000 (22:28 +0200)]
ref #10326 add alternativeRootNodeMarkerType  uuid to MarkerType

13 months agorename CdmBase.isPersited -> isPersisted in cdmlib
Andreas Müller [Thu, 8 Jun 2023 19:27:35 +0000 (21:27 +0200)]
rename CdmBase.isPersited -> isPersisted in cdmlib

13 months agoref #10322 by default use distribution treeDto
Andreas Müller [Thu, 8 Jun 2023 16:26:55 +0000 (18:26 +0200)]
ref #10322 by default use distribution treeDto

13 months agoUpdating develop poms back to pre merge state
jenkins [Thu, 8 Jun 2023 15:42:18 +0000 (17:42 +0200)]
Updating develop poms back to pre merge state

13 months agoMerge branch 'master' into develop
jenkins [Thu, 8 Jun 2023 15:42:16 +0000 (17:42 +0200)]
Merge branch 'master' into develop

13 months agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 8 Jun 2023 15:42:15 +0000 (17:42 +0200)]
updating develop poms to master versions to avoid merge conflicts

13 months agoMerge branch 'release/5.38.0' 5.38.0
jenkins [Thu, 8 Jun 2023 15:42:09 +0000 (17:42 +0200)]
Merge branch 'release/5.38.0'

13 months agoupdating poms for branch'release/5.38.0' with non-snapshot versions
jenkins [Thu, 8 Jun 2023 15:28:32 +0000 (17:28 +0200)]
updating poms for branch'release/5.38.0' with non-snapshot versions

13 months agoupdating poms for 5.39.0-SNAPSHOT development
jenkins [Thu, 8 Jun 2023 14:25:43 +0000 (16:25 +0200)]
updating poms for 5.39.0-SNAPSHOT development

13 months agoref #9640 cleanup and add Chapter F 2019
Andreas Müller [Thu, 8 Jun 2023 14:23:39 +0000 (16:23 +0200)]
ref #9640 cleanup and add Chapter F 2019

13 months agoref #9640 fix forCode tests
Andreas Müller [Thu, 8 Jun 2023 13:24:18 +0000 (15:24 +0200)]
ref #9640 fix forCode tests

13 months agoref #9640 add some more codes to the NomenclaturalCodeEdition enum and add publicatio...
Andreas Müller [Thu, 8 Jun 2023 13:17:10 +0000 (15:17 +0200)]
ref #9640 add some more codes to the NomenclaturalCodeEdition enum and add publication year

13 months agoref #9640, ref #10302 implement NomenclaturalCodeEdition.toString same as label
Andreas Müller [Thu, 8 Jun 2023 11:48:00 +0000 (13:48 +0200)]
ref #9640, ref #10302 implement NomenclaturalCodeEdition.toString same as label

13 months agocleanup
Andreas Müller [Thu, 8 Jun 2023 11:47:27 +0000 (13:47 +0200)]
cleanup

13 months agoref #9640, ref #10302 remove pages as they are not part of the official "how to cite"
Andreas Müller [Thu, 8 Jun 2023 11:33:12 +0000 (13:33 +0200)]
ref #9640, ref #10302 remove pages as they are not part of the official "how to cite"

13 months agoref #9640, ref #10302 add citation data for St Louis Code
Andreas Müller [Thu, 8 Jun 2023 10:31:35 +0000 (12:31 +0200)]
ref #9640, ref #10302 add citation data for St Louis Code

13 months agoref #9640, ref #10302 add citation data for 2011 and 2005 codes
Andreas Müller [Thu, 8 Jun 2023 09:47:42 +0000 (11:47 +0200)]
ref #9640, ref #10302 add citation data for 2011 and 2005 codes

13 months agoref #10326 handle alternativeRootArea in condensedDistrString
Andreas Müller [Wed, 7 Jun 2023 22:05:26 +0000 (00:05 +0200)]
ref #10326 handle alternativeRootArea in condensedDistrString

13 months agocleanup
Andreas Müller [Wed, 7 Jun 2023 22:02:41 +0000 (00:02 +0200)]
cleanup

13 months agoref #10326 fix root switch and check empty and some javadoc
Andreas Müller [Wed, 7 Jun 2023 20:51:00 +0000 (22:51 +0200)]
ref #10326 fix root switch and check empty and some javadoc

13 months agoref #10326 handle alternativeRootArea in non-DTO based distribution tree (cont.)
Andreas Müller [Wed, 7 Jun 2023 19:39:01 +0000 (21:39 +0200)]
ref #10326 handle alternativeRootArea in non-DTO based distribution tree (cont.)

13 months agorevert unwanted cleanup changes
Andreas Müller [Wed, 7 Jun 2023 19:37:23 +0000 (21:37 +0200)]
revert unwanted cleanup changes

13 months agoref #10326 handle alternativeRootArea in non-DTO based distribution tree
Andreas Müller [Wed, 7 Jun 2023 19:31:23 +0000 (21:31 +0200)]
ref #10326 handle alternativeRootArea in non-DTO based distribution tree

13 months agocleanup (cont.)
Andreas Müller [Wed, 7 Jun 2023 19:30:45 +0000 (21:30 +0200)]
cleanup (cont.)

13 months agoref #10326 handle alternativeRootArea in DTO based distribution tree
Andreas Müller [Wed, 7 Jun 2023 19:13:55 +0000 (21:13 +0200)]
ref #10326 handle alternativeRootArea in DTO based distribution tree

13 months agocleanup
Andreas Müller [Wed, 7 Jun 2023 19:05:15 +0000 (21:05 +0200)]
cleanup

13 months agoref #9640, ref #10302 add uuid from phycobank reference to Shenzhen code
Andreas Müller [Wed, 7 Jun 2023 11:57:22 +0000 (13:57 +0200)]
ref #9640, ref #10302 add uuid from phycobank reference to Shenzhen code

13 months agocleanup (rename hiddenArea->fallbackArea) and others
Andreas Müller [Wed, 7 Jun 2023 11:56:15 +0000 (13:56 +0200)]
cleanup (rename hiddenArea->fallbackArea) and others

13 months agoref #9640, ref #10302 add codeEditon source to webservice
Andreas Müller [Wed, 7 Jun 2023 09:17:09 +0000 (11:17 +0200)]
ref #9640, ref #10302 add codeEditon source to webservice

13 months agoref #9640, ref #10302 add citation and source to NomenclaturalCodeEdition, at least...
Andreas Müller [Tue, 6 Jun 2023 22:04:37 +0000 (00:04 +0200)]
ref #9640, ref #10302 add citation and source to NomenclaturalCodeEdition, at least for Shenzhen 2017

13 months agoref #10335: add CdmBaseDto Interface
Katja Luther [Tue, 6 Jun 2023 19:51:54 +0000 (21:51 +0200)]
ref #10335: add CdmBaseDto Interface

13 months agojavadoc
Andreas Müller [Tue, 6 Jun 2023 14:01:51 +0000 (16:01 +0200)]
javadoc

13 months agoref #10327 fix iucn config handling
Andreas Müller [Mon, 5 Jun 2023 15:34:20 +0000 (17:34 +0200)]
ref #10327 fix iucn config handling

13 months agocleanup
Andreas Müller [Mon, 5 Jun 2023 14:08:17 +0000 (16:08 +0200)]
cleanup

13 months agoref #10327 taxon portal dto loader uses iucn distr info
Andreas Müller [Mon, 5 Jun 2023 13:19:38 +0000 (15:19 +0200)]
ref #10327 taxon portal dto loader uses iucn distr info

13 months agominor
Andreas Müller [Mon, 5 Jun 2023 12:21:10 +0000 (14:21 +0200)]
minor

13 months agoref #10327 first IUCN distribution string implementation
Andreas Müller [Mon, 5 Jun 2023 10:58:34 +0000 (12:58 +0200)]
ref #10327 first IUCN distribution string implementation

13 months agoref #10335: create AnnotationDto and MarkerDto and handle them when
Katja Luther [Mon, 5 Jun 2023 13:12:24 +0000 (15:12 +0200)]
ref #10335: create AnnotationDto and MarkerDto and handle them when
saving nodes

13 months agorename fallbackAreaMarker in configuration
Andreas Müller [Mon, 5 Jun 2023 07:57:12 +0000 (09:57 +0200)]
rename fallbackAreaMarker in configuration

14 months agoref #10336remove default value for etAl from taxon page service
Andreas Müller [Thu, 1 Jun 2023 17:33:10 +0000 (19:33 +0200)]
ref #10336remove default value for etAl from taxon page service

14 months agoCleanup
Andreas Müller [Thu, 1 Jun 2023 15:42:27 +0000 (17:42 +0200)]
Cleanup

14 months agofix #10222 remove elements from parts set to avoid model instances to be returned
Andreas Müller [Wed, 31 May 2023 10:50:26 +0000 (12:50 +0200)]
fix #10222 remove elements from parts set to avoid model instances to be returned