Andreas Müller [Wed, 15 May 2019 12:57:14 +0000 (14:57 +0200)]
ref #7470 add TextualTypeDesignation.isVerbatim to test schemas
Andreas Müller [Wed, 15 May 2019 12:25:31 +0000 (14:25 +0200)]
ref #7470 add TextualTypeDesignation to hibernate.cfg
Patrick Plitzner [Wed, 15 May 2019 06:55:08 +0000 (08:55 +0200)]
ref #6774 Export term vocabulary for each term
Patrick Plitzner [Wed, 15 May 2019 06:07:33 +0000 (08:07 +0200)]
ref #6774 Refactor export for multiple term trees
Andreas Müller [Mon, 13 May 2019 18:18:55 +0000 (20:18 +0200)]
minor
Katja Luther [Mon, 13 May 2019 07:58:01 +0000 (09:58 +0200)]
fix #8264: add published to synonym table
Katja Luther [Fri, 10 May 2019 08:31:36 +0000 (10:31 +0200)]
fix #8264: add excluded, unplaced and published to taxon table of cdm light export
Katja Luther [Wed, 8 May 2019 11:03:24 +0000 (13:03 +0200)]
ref #7433: changes to get dnaSample for genetic accession number
Patrick Plitzner [Tue, 7 May 2019 14:27:28 +0000 (16:27 +0200)]
ref #8263 Set vocabulary DTO for all term DTOs during initialization
Andreas Müller [Tue, 7 May 2019 12:52:43 +0000 (14:52 +0200)]
E+M special languages
Patrick Plitzner [Tue, 7 May 2019 10:12:52 +0000 (12:12 +0200)]
fix #8257 Remove factory methods for term node creation
Katja Luther [Tue, 7 May 2019 07:50:51 +0000 (09:50 +0200)]
ref #8045: add Interface for Preference Enums
jenkins [Mon, 6 May 2019 14:42:22 +0000 (16:42 +0200)]
Updating develop poms back to pre merge state
jenkins [Mon, 6 May 2019 14:42:21 +0000 (16:42 +0200)]
Merge branch 'master' into develop
jenkins [Mon, 6 May 2019 14:42:21 +0000 (16:42 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Mon, 6 May 2019 14:42:17 +0000 (16:42 +0200)]
Merge branch 'release/5.7.0'
jenkins [Mon, 6 May 2019 14:26:58 +0000 (16:26 +0200)]
updating poms for branch'release/5.7.0' with non-snapshot versions
jenkins [Fri, 3 May 2019 15:21:25 +0000 (17:21 +0200)]
updating poms for 5.8.0-SNAPSHOT development
Andreas Müller [Fri, 3 May 2019 13:45:06 +0000 (15:45 +0200)]
cleanup
Andreas Müller [Fri, 3 May 2019 13:44:46 +0000 (15:44 +0200)]
fix preference value length check in CdmPreference constructor. Adapt to new length
Patrick Plitzner [Fri, 3 May 2019 09:58:34 +0000 (11:58 +0200)]
ref #8242 Ensure order of TermDTO query
Patrick Plitzner [Thu, 2 May 2019 16:06:42 +0000 (18:06 +0200)]
Fix term creation for multiple representations
Patrick Plitzner [Thu, 2 May 2019 15:56:08 +0000 (17:56 +0200)]
Add constructor for term type only
Patrick Plitzner [Thu, 2 May 2019 14:07:52 +0000 (16:07 +0200)]
Fix owl structure tree import test
Patrick Plitzner [Thu, 2 May 2019 10:41:45 +0000 (12:41 +0200)]
Rename Owl import/export to StructureTreeOwl import/export
Andreas Kohlbecker [Tue, 30 Apr 2019 17:47:22 +0000 (19:47 +0200)]
ref #8252 improving ReferenceEllypsisFormatter for print series and proceedings
Andreas Kohlbecker [Tue, 30 Apr 2019 14:15:33 +0000 (16:15 +0200)]
ref #8252 improving ReferenceEllypsisFormatter for journals and other references where the main information is in the title
Andreas Kohlbecker [Tue, 30 Apr 2019 13:05:24 +0000 (15:05 +0200)]
ref #8193 collection setter for TaxonName.status
Andreas Müller [Tue, 30 Apr 2019 10:40:33 +0000 (12:40 +0200)]
fix #8251 fix property path for FeatureTreeListController
Andreas Müller [Tue, 30 Apr 2019 10:40:00 +0000 (12:40 +0200)]
cleanup
Andreas Müller [Mon, 29 Apr 2019 17:15:36 +0000 (19:15 +0200)]
minor cleanup
Andreas Müller [Mon, 29 Apr 2019 12:53:24 +0000 (14:53 +0200)]
Update OwlImportTest. Use ClearDBDatSet instead of ClearDataSet. Still failing.
Andreas Kohlbecker [Mon, 29 Apr 2019 14:06:05 +0000 (16:06 +0200)]
removing debuging code line
Andreas Kohlbecker [Mon, 29 Apr 2019 14:02:34 +0000 (16:02 +0200)]
ref #7965 methods to get typeDesignationStatusInUse as term an as filter object
Patrick Plitzner [Mon, 29 Apr 2019 08:45:50 +0000 (10:45 +0200)]
Fix OWL test package structure
Andreas Müller [Mon, 29 Apr 2019 12:27:58 +0000 (14:27 +0200)]
try to fix test
Katja Luther [Mon, 29 Apr 2019 12:18:35 +0000 (14:18 +0200)]
revert changes in PrefKey
Katja Luther [Mon, 29 Apr 2019 11:52:25 +0000 (13:52 +0200)]
rename getUuidAndTitleCache for namedAreas
Katja Luther [Mon, 29 Apr 2019 10:30:17 +0000 (12:30 +0200)]
minor
Katja Luther [Mon, 29 Apr 2019 10:19:18 +0000 (12:19 +0200)]
ref #7920: add predicate for area specicific status
Andreas Kohlbecker [Fri, 26 Apr 2019 16:33:13 +0000 (18:33 +0200)]
ref #8209 avoiding LIEs when using the ReferenceEllypsisFormatter
Patrick Plitzner [Fri, 26 Apr 2019 14:47:14 +0000 (16:47 +0200)]
ref #8248 Add term representations to OWL import and export and test
Patrick Plitzner [Fri, 26 Apr 2019 14:45:46 +0000 (16:45 +0200)]
ref #8248 Add constructor for term with a set of representations
Patrick Plitzner [Fri, 26 Apr 2019 10:02:25 +0000 (12:02 +0200)]
ref #8248 Ready OWL import for taxeditor usage
Patrick Plitzner [Thu, 25 Apr 2019 12:21:44 +0000 (14:21 +0200)]
ref #8248 Enhance OWL import
- Add term URI to import
- add sources to imported terms
- create term vocabulary for imported terms
- check for already existing terms
- save terms, feature nodes and feature trees to DB
- update OWL import test with added properties
Patrick Plitzner [Thu, 25 Apr 2019 12:18:56 +0000 (14:18 +0200)]
ref #8248 Add URI to OWL export
Patrick Plitzner [Thu, 25 Apr 2019 12:17:32 +0000 (14:17 +0200)]
Fix potential NPE
Patrick Plitzner [Thu, 25 Apr 2019 12:17:23 +0000 (14:17 +0200)]
ref #8248 Add service method to find terms by URI
Patrick Plitzner [Thu, 25 Apr 2019 07:10:57 +0000 (09:10 +0200)]
ref #8248 Implement OWL import test
Patrick Plitzner [Thu, 25 Apr 2019 07:09:42 +0000 (09:09 +0200)]
Remove limitation for FeatureTree.getDistinctFeatures() to only features
Patrick Plitzner [Thu, 25 Apr 2019 06:38:20 +0000 (08:38 +0200)]
ref #8248 Implement OWL import
- add more properties to export
- create complete FeatureTree during import
Patrick Plitzner [Wed, 24 Apr 2019 10:16:31 +0000 (12:16 +0200)]
ref #8248 Implement OWL import
- add framework classes
Patrick Plitzner [Wed, 24 Apr 2019 10:12:04 +0000 (12:12 +0200)]
ref #8242 Add service method to get all terms for multiple vocabularies
Katja Luther [Wed, 24 Apr 2019 08:47:44 +0000 (10:47 +0200)]
getUuidAndTitleCache for namedAreas with voc restriction
Andreas Kohlbecker [Tue, 23 Apr 2019 13:18:31 +0000 (15:18 +0200)]
adding workbench.xmi to ignores
Patrick Plitzner [Thu, 18 Apr 2019 11:25:04 +0000 (13:25 +0200)]
ref #8242 Pass list of States to row wrapper
Patrick Plitzner [Thu, 18 Apr 2019 11:24:39 +0000 (13:24 +0200)]
ref #8242 Add service method to get all terms for a given vocabulary
jenkins [Mon, 15 Apr 2019 14:19:46 +0000 (16:19 +0200)]
Updating develop poms back to pre merge state
jenkins [Mon, 15 Apr 2019 14:19:45 +0000 (16:19 +0200)]
Merge branch 'master' into develop
jenkins [Mon, 15 Apr 2019 14:19:44 +0000 (16:19 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Mon, 15 Apr 2019 14:19:40 +0000 (16:19 +0200)]
Merge branch 'release/5.6.0'
jenkins [Mon, 15 Apr 2019 14:02:19 +0000 (16:02 +0200)]
updating poms for branch'release/5.6.0' with non-snapshot versions
Patrick Plitzner [Mon, 15 Apr 2019 13:54:55 +0000 (15:54 +0200)]
Merge branch 'develop' into release/5.6.0
Patrick Plitzner [Thu, 11 Apr 2019 09:00:06 +0000 (11:00 +0200)]
ref #7865 Add move message to protected title caches
Patrick Plitzner [Thu, 11 Apr 2019 08:31:24 +0000 (10:31 +0200)]
ref #7865 Fix description label generation when moving
Patrick Plitzner [Wed, 10 Apr 2019 15:41:12 +0000 (17:41 +0200)]
ref #8233 Add barcode and catalog number to clone type service method
Patrick Plitzner [Wed, 10 Apr 2019 11:33:10 +0000 (13:33 +0200)]
Revert "ref #7865 Fix titleCache generation when moving taxon descriptions"
This reverts commit
48c401d490b010f21c5e6718263236b99a12d3cb.
Patrick Plitzner [Wed, 10 Apr 2019 07:14:08 +0000 (09:14 +0200)]
ref #8234 Remove description element when moving it
Patrick Plitzner [Wed, 10 Apr 2019 07:02:24 +0000 (09:02 +0200)]
ref #7865 Fix titleCache generation when moving taxon descriptions
Patrick Plitzner [Tue, 9 Apr 2019 11:26:12 +0000 (13:26 +0200)]
Convert more service methods to only use UUID
- fix creation service method
Patrick Plitzner [Tue, 9 Apr 2019 10:49:29 +0000 (12:49 +0200)]
Convert service methods to only use UUID
Katja Luther [Tue, 9 Apr 2019 06:50:49 +0000 (08:50 +0200)]
ref #8124: adapt TaxonNameDescriptionDefaultCacheStrategy
Katja Luther [Mon, 8 Apr 2019 11:16:58 +0000 (13:16 +0200)]
ref #8088: avoid NPE in saveTaxonNode
Katja Luther [Mon, 8 Apr 2019 08:29:45 +0000 (10:29 +0200)]
ref #8096: smaller changes for update caches
Katja Luther [Fri, 5 Apr 2019 12:31:22 +0000 (14:31 +0200)]
add test for adding member to group
Patrick Plitzner [Fri, 5 Apr 2019 12:34:15 +0000 (14:34 +0200)]
ref #6413 Replace service method parameters with UUIDs
Andreas Müller [Thu, 4 Apr 2019 08:09:57 +0000 (10:09 +0200)]
deprecate isNomenclaturallyRelevant
Andreas Müller [Thu, 4 Apr 2019 08:04:44 +0000 (10:04 +0200)]
javadoc for DefaultMatchStrategy
Katja Luther [Thu, 4 Apr 2019 07:55:16 +0000 (09:55 +0200)]
ref #8088: fix LIE in saveTaxonNode
Andreas Müller [Wed, 3 Apr 2019 15:47:30 +0000 (17:47 +0200)]
ref #8153 adapt ColumnAdder and ColumnTypeChanger to handle NOT NULL correctly for auditing tables
Andreas Kohlbecker [Wed, 3 Apr 2019 08:15:26 +0000 (10:15 +0200)]
ref #8189 fallback method for getCdmHomeSubDir() and fixing bug in getCdmHomeDirFallback()
Andreas Kohlbecker [Tue, 2 Apr 2019 11:24:35 +0000 (13:24 +0200)]
ref #8189 fixing invalid NULL check
Andreas Kohlbecker [Tue, 2 Apr 2019 09:32:36 +0000 (11:32 +0200)]
ref #8189 removing useless trailing slashes
Andreas Kohlbecker [Tue, 2 Apr 2019 09:09:50 +0000 (11:09 +0200)]
toString() method for RegistrationWorkingSet
Katja Luther [Tue, 2 Apr 2019 06:30:38 +0000 (08:30 +0200)]
ref #8115: adapt test
Katja Luther [Mon, 1 Apr 2019 14:09:15 +0000 (16:09 +0200)]
ref #7433: add controller method to get dnaSample for given geneticAccessionnumber
Katja Luther [Mon, 1 Apr 2019 14:06:31 +0000 (16:06 +0200)]
ref #8115: do not delete description when moving the last element
Katja Luther [Mon, 1 Apr 2019 14:00:19 +0000 (16:00 +0200)]
ref #8096: minor
Patrick Plitzner [Mon, 1 Apr 2019 13:48:40 +0000 (15:48 +0200)]
ref #8190 Fix termType in FeatureNode creation
Katja Luther [Mon, 1 Apr 2019 13:40:25 +0000 (15:40 +0200)]
ref #7700:smaller changes in TypeDesignationManager (add fide citation)
Katja Luther [Mon, 1 Apr 2019 13:26:54 +0000 (15:26 +0200)]
revert controller method in OccurenceListController
Katja Luther [Mon, 1 Apr 2019 12:55:15 +0000 (14:55 +0200)]
adapt ConfigFileUtils to handle file access without appllication context
Katja Luther [Mon, 1 Apr 2019 11:49:15 +0000 (13:49 +0200)]
ref #7433: add controller method to get dnaSample for given geneticAccessionnumber
Katja Luther [Mon, 1 Apr 2019 09:27:01 +0000 (11:27 +0200)]
ref #7515: TypedesignationStatusComparator inherit from OrderedTermComparator
Andreas Kohlbecker [Fri, 29 Mar 2019 14:23:00 +0000 (15:23 +0100)]
ref #8189 providing fallback method to retrieve the ~/.cdmLibrary folder without application context
Katja Luther [Fri, 29 Mar 2019 13:02:17 +0000 (14:02 +0100)]
ref #7920: add new predicate for per area status preferences
Patrick Plitzner [Fri, 29 Mar 2019 13:00:31 +0000 (14:00 +0100)]
Fix potential NPE
Andreas Kohlbecker [Wed, 27 Mar 2019 10:43:23 +0000 (11:43 +0100)]
comments and doc for IRegistrationService
Andreas Kohlbecker [Mon, 25 Mar 2019 13:48:01 +0000 (14:48 +0100)]
ref #8188 adding empty hibernate.properties for main to satisfy PropertiesFactoryBean in production mode
Andreas Kohlbecker [Mon, 25 Mar 2019 12:13:10 +0000 (13:13 +0100)]
ref #8189 better reporting of error conditions in AbstractWebApplicationConfigurer