Andreas Müller [Fri, 23 Sep 2016 09:00:49 +0000 (11:00 +0200)]
Cleanup
Andreas Müller [Thu, 22 Sep 2016 12:10:54 +0000 (14:10 +0200)]
ref #6065 fix NPEs in classification service
Andreas Müller [Thu, 22 Sep 2016 11:25:20 +0000 (13:25 +0200)]
ref #6065 fix NPE in pageSize/limit
Andreas Müller [Thu, 22 Sep 2016 10:27:27 +0000 (12:27 +0200)]
ref #6065 fix NPE in pageSize
Andreas Müller [Thu, 22 Sep 2016 09:20:16 +0000 (11:20 +0200)]
ref #6065 fix page size and add marked ancestors
Andreas Müller [Thu, 22 Sep 2016 08:37:00 +0000 (10:37 +0200)]
ref #6065 fix missing taxonUuid in URL
Andreas Müller [Wed, 21 Sep 2016 15:49:13 +0000 (17:49 +0200)]
ref #6065 first implementation of taxonInContext service
Andreas Müller [Wed, 21 Sep 2016 15:47:07 +0000 (17:47 +0200)]
cleanup
Andreas Müller [Wed, 21 Sep 2016 13:11:48 +0000 (15:11 +0200)]
further refactor FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller [Wed, 21 Sep 2016 12:48:45 +0000 (14:48 +0200)]
rename FindByIdentifierDTO and FindByMarkerDTO
Andreas Kohlbecker [Wed, 21 Sep 2016 09:24:49 +0000 (11:24 +0200)]
Revert "fix #6037 per batch transction commit implemented for excel imports"
This reverts commit
53067226137bd8528e6bc26f21edbf98aebe26a9.
Andreas Müller [Wed, 21 Sep 2016 08:51:19 +0000 (10:51 +0200)]
ref #6066 rename childNodes to childNodesByTaxon in ClassificationController
Andreas Müller [Wed, 21 Sep 2016 08:07:46 +0000 (10:07 +0200)]
ref #6066 add getChildNodes to classification service
Andreas Kohlbecker [Tue, 20 Sep 2016 15:16:00 +0000 (17:16 +0200)]
ref #6087 adding orderINdex to TermDTO
Andreas Müller [Tue, 20 Sep 2016 11:51:45 +0000 (13:51 +0200)]
ref #6066 fix Index out of bound exception
Katja Luther [Mon, 19 Sep 2016 11:12:17 +0000 (13:12 +0200)]
fix #6061: search in titlecache and nomenclatural titleCache in getUuidAndAbbrevTitleCache
Katja Luther [Mon, 19 Sep 2016 08:08:51 +0000 (10:08 +0200)]
fix failing IPNI Service Test
Andreas Müller [Sat, 17 Sep 2016 05:52:39 +0000 (07:52 +0200)]
revert tests
Andreas Müller [Sat, 17 Sep 2016 05:21:16 +0000 (07:21 +0200)]
Ignore service test
Andreas Müller [Sat, 17 Sep 2016 05:04:59 +0000 (07:04 +0200)]
ref #6072 test missing entity in webservice
Andreas Müller [Fri, 16 Sep 2016 21:18:51 +0000 (23:18 +0200)]
ref #6072 test missing entity in webservice
Andreas Müller [Fri, 16 Sep 2016 20:35:16 +0000 (22:35 +0200)]
ref #6072 set defaults to false and hardcode includeEntity to true for debugging
Andreas Müller [Fri, 16 Sep 2016 17:56:48 +0000 (19:56 +0200)]
ref #6072 fix signature issue in remote (2nd try)
Andreas Müller [Fri, 16 Sep 2016 17:31:27 +0000 (19:31 +0200)]
ref #6072 fix signature issue in remote
Andreas Müller [Fri, 16 Sep 2016 17:03:44 +0000 (19:03 +0200)]
ref #6072 fix compilation issue in IIdentifiableEntityService
Andreas Müller [Fri, 16 Sep 2016 15:30:16 +0000 (17:30 +0200)]
Cleanup
Andreas Müller [Fri, 16 Sep 2016 15:30:05 +0000 (17:30 +0200)]
fix #6072 Implement findIdentifiableEntityByMarkers
Andreas Müller [Thu, 15 Sep 2016 21:20:43 +0000 (23:20 +0200)]
ref #6089 Remove failing irrelevant test
Andreas Müller [Thu, 15 Sep 2016 21:09:27 +0000 (23:09 +0200)]
ref #6089 Remove all calls and methods for taxonomicChildrenCount and taxonomicParentCache
Andreas Müller [Thu, 15 Sep 2016 21:00:49 +0000 (23:00 +0200)]
Cleanup; Delete unnecessary test classes.
Andreas Müller [Thu, 15 Sep 2016 16:13:17 +0000 (18:13 +0200)]
fix #6066 Implement doPageChildNodes with doSynonyms
Andreas Müller [Thu, 15 Sep 2016 16:08:45 +0000 (18:08 +0200)]
Clean up
Andreas Müller [Thu, 15 Sep 2016 16:04:40 +0000 (18:04 +0200)]
Adapt failing test in NonViralNameParserImplTest
Andreas Kohlbecker [Thu, 15 Sep 2016 13:33:19 +0000 (15:33 +0200)]
ref #6086 solving the problems in the java-script of the web application monitor widget:
- chunk information: number rounded and label renamed
- Percentage number rounding fixed
Andreas Müller [Thu, 15 Sep 2016 13:10:32 +0000 (15:10 +0200)]
ref #6086 fix failing test
Andreas Müller [Thu, 15 Sep 2016 12:27:43 +0000 (14:27 +0200)]
rel #6086 Improve rounding for progress monitor
* fix error in rounding by using round not ceil
* add method for user defined scaled rounding
Andreas Müller [Thu, 15 Sep 2016 12:21:20 +0000 (14:21 +0200)]
some cleanup
Katja Luther [Thu, 15 Sep 2016 08:41:47 +0000 (10:41 +0200)]
fix #5837: search on abbrevTitleCache instead of abbrev title
Andreas Kohlbecker [Wed, 14 Sep 2016 15:11:20 +0000 (17:11 +0200)]
correcting erroneous commit
Andreas Kohlbecker [Tue, 13 Sep 2016 16:25:39 +0000 (18:25 +0200)]
gitignore
Andreas Kohlbecker [Tue, 13 Sep 2016 14:47:51 +0000 (16:47 +0200)]
fix #4497 solving problem with status parameter in taxon search
Katja Luther [Tue, 13 Sep 2016 09:48:06 +0000 (11:48 +0200)]
ref #5969: add PreferenceService to applicationController
Patrick Plitzner [Tue, 13 Sep 2016 05:20:19 +0000 (07:20 +0200)]
Remove duplicate method
Andreas Müller [Mon, 12 Sep 2016 14:42:26 +0000 (16:42 +0200)]
rel #5957 improve tests for groupTaxaByHigherTaxon
Andreas Müller [Mon, 12 Sep 2016 14:25:07 +0000 (16:25 +0200)]
fix #5957 fix IndexOutOfBound exception and some other improvements for groupByHigherTaxon
Andreas Müller [Mon, 12 Sep 2016 14:23:04 +0000 (16:23 +0200)]
minor
Andreas Kohlbecker [Mon, 12 Sep 2016 13:28:35 +0000 (15:28 +0200)]
better percentage values from Progressmonitor
Katja Luther [Mon, 12 Sep 2016 12:59:36 +0000 (14:59 +0200)]
fix #6061: search for titlecache if abbrev title is empty
Katja Luther [Mon, 12 Sep 2016 12:58:18 +0000 (14:58 +0200)]
fix #6061: smaller changes
Patrick Plitzner [Mon, 12 Sep 2016 11:34:56 +0000 (13:34 +0200)]
ref #6032 Remove test for rank as mentioned in ticket
Andreas Müller [Fri, 9 Sep 2016 14:38:03 +0000 (16:38 +0200)]
Add Vorabdr. to parsable volume
Katja Luther [Fri, 9 Sep 2016 11:34:00 +0000 (13:34 +0200)]
minor
Katja Luther [Fri, 9 Sep 2016 11:20:44 +0000 (13:20 +0200)]
minor
Katja Luther [Fri, 9 Sep 2016 10:58:21 +0000 (12:58 +0200)]
smaller changes for importing nom. reference in normal explicit excel import
Katja Luther [Fri, 9 Sep 2016 10:29:41 +0000 (12:29 +0200)]
normal explicit excel import: add reference to name import
Andreas Müller [Fri, 9 Sep 2016 09:37:20 +0000 (11:37 +0200)]
Add javadoc for languages
Andreas Müller [Thu, 8 Sep 2016 14:51:40 +0000 (16:51 +0200)]
fix #6060 parse author with -e-
Andreas Müller [Thu, 8 Sep 2016 14:39:59 +0000 (16:39 +0200)]
rel #6057 further improvements for authors with accent grave
Andreas Müller [Thu, 8 Sep 2016 12:21:12 +0000 (14:21 +0200)]
fix #6057 Accent Graph in author parser
Patrick Plitzner [Thu, 8 Sep 2016 08:40:07 +0000 (10:40 +0200)]
ref #4260 Added test for 0 parameter query
Patrick Plitzner [Wed, 7 Sep 2016 09:11:39 +0000 (11:11 +0200)]
ref #6045 some comments and clean up
Katja Luther [Wed, 7 Sep 2016 07:39:45 +0000 (09:39 +0200)]
minor changes in excel import
Katja Luther [Tue, 6 Sep 2016 07:48:37 +0000 (09:48 +0200)]
adding missing test file for tropicos import
Katja Luther [Sun, 4 Sep 2016 19:12:13 +0000 (21:12 +0200)]
extend excel import to cover simple tropicos data
Andreas Müller [Fri, 2 Sep 2016 11:17:30 +0000 (13:17 +0200)]
ref #6032 test name parser support for hybrid ranks and non-hybrids
Andreas Müller [Fri, 2 Sep 2016 10:01:26 +0000 (12:01 +0200)]
ref #6030 Add additional test for genus hybrid formula parsing
Katja Luther [Fri, 2 Sep 2016 10:36:20 +0000 (12:36 +0200)]
fix #5893: set parse reference public to use it in fauna europaea import
Andreas Müller [Fri, 2 Sep 2016 09:47:33 +0000 (11:47 +0200)]
fix #6030 Parse Genus hybrid formulas correctly
Patrick Plitzner [Wed, 31 Aug 2016 08:36:56 +0000 (10:36 +0200)]
ref #6045 Add test for getAncestor()
Katja Luther [Wed, 31 Aug 2016 12:52:43 +0000 (14:52 +0200)]
fix #6045: fixing the NaturalOrderComparator and complete the test
Patrick Plitzner [Tue, 30 Aug 2016 14:07:56 +0000 (16:07 +0200)]
ref #6045 Fix NPE for TaxonNaturalComparator
- fix getAncestors() method of taxon node
- added JUnit test
Katja Luther [Fri, 26 Aug 2016 10:36:03 +0000 (12:36 +0200)]
fix #5869 adapt implementation for reusing names or taxa with remoting
Katja Luther [Thu, 25 Aug 2016 08:26:02 +0000 (10:26 +0200)]
ref #5837 implement search for nomenclatural title
Patrick Plitzner [Tue, 23 Aug 2016 13:27:46 +0000 (15:27 +0200)]
ref #6042 Avoid -title cache generation not implemented- for citations
in specimen table view
Katja Luther [Tue, 23 Aug 2016 09:47:31 +0000 (11:47 +0200)]
fix #5828: add abbrevTitleCache and titleCache to uuidAndTitleCache
Katja Luther [Tue, 23 Aug 2016 08:17:44 +0000 (10:17 +0200)]
revert the changes in representation of rank infraspecific unranked
Patrick Plitzner [Tue, 16 Aug 2016 07:39:05 +0000 (09:39 +0200)]
Remove @Ignore from test
Patrick Plitzner [Mon, 15 Aug 2016 13:51:28 +0000 (15:51 +0200)]
Fix merge problems
Patrick Plitzner [Mon, 15 Aug 2016 09:13:55 +0000 (11:13 +0200)]
fix #6001 Clean up multiple sourceNotLinked() methods
Patrick Plitzner [Mon, 15 Aug 2016 06:43:54 +0000 (08:43 +0200)]
Fix titlecache issues for specimen table in data portal
- Use Link class for every link
- Open all links in new window
Katja Luther [Fri, 12 Aug 2016 08:26:38 +0000 (10:26 +0200)]
smaller changes
Katja Luther [Fri, 12 Aug 2016 07:49:53 +0000 (09:49 +0200)]
specimen import changes
Patrick Plitzner [Thu, 11 Aug 2016 13:20:33 +0000 (15:20 +0200)]
Import specimen scans with StillImage type
Patrick Plitzner [Thu, 11 Aug 2016 13:19:44 +0000 (15:19 +0200)]
Remove unneccesary casts
Patrick Plitzner [Wed, 10 Aug 2016 08:14:48 +0000 (10:14 +0200)]
ref #5448 Change abbreviation for unranked infraspecific rank
Andreas Kohlbecker [Thu, 4 Aug 2016 12:30:01 +0000 (14:30 +0200)]
fix #6037 per batch transction commit implemented for excel imports
Andreas Müller [Mon, 1 Aug 2016 14:13:29 +0000 (16:13 +0200)]
#5751 remove version numbers from cdmlib-db and some cleanup
Andreas Müller [Mon, 1 Aug 2016 13:20:59 +0000 (15:20 +0200)]
#5751 finish redo r28780
* use cdmlib-test in persistence for 2 antrun plugin and hibernate3 plugin
Andreas Müller [Mon, 1 Aug 2016 13:15:38 +0000 (15:15 +0200)]
#5751 Partly redo r28780,
* remove com.mchange from cdmlib-remote-webapp test scope
* use cdmlib-db in persistence for 2 further plugins
Andreas Müller [Mon, 1 Aug 2016 12:04:03 +0000 (14:04 +0200)]
#5751 further redo r28776, handle c3p0 via cdmlib-db in persistence
Andreas Müller [Mon, 1 Aug 2016 11:51:18 +0000 (13:51 +0200)]
#5751 further redo r28776, add cdmlib-db to persistence and remote-webapp
Andreas Müller [Mon, 1 Aug 2016 11:20:45 +0000 (13:20 +0200)]
#5751 Partly redo r28776, add c3p0 and mchange to cdmlib-db
* r28776 had been reverted due to problems, try to redo those parts that
do not create problems
Andreas Müller [Thu, 28 Jul 2016 14:04:12 +0000 (16:04 +0200)]
#3868 Add nothovar. test
Andreas Müller [Thu, 28 Jul 2016 10:40:04 +0000 (12:40 +0200)]
#6000 fix missing default color
Andreas Müller [Wed, 27 Jul 2016 15:46:30 +0000 (17:46 +0200)]
#6000 Add static methods and uuids for new PAT terms
Andreas Müller [Wed, 27 Jul 2016 15:13:13 +0000 (17:13 +0200)]
#6000 Add some new PresenceAbsenceTerms from Cyprus and Cuba
* Invasive changed to naturalized invasive (Cyprus, according to Pysek)
* naturalized invasive: presence questionable (Cyprus)
* naturalized non-invasive (Cyprus)
* naturalized non-invasive: presence questionable (Cyprus)
* naturalised: presence questionable (Cuba)
* casual: presence questionable (Cuba)
* casual: reported in error (Cuba)
Andreas Müller [Wed, 27 Jul 2016 15:09:21 +0000 (17:09 +0200)]
#6000 Use new CASUAL Method instead of derpeacted INTRODUCED_ADVENTITIOUS
Andreas Müller [Wed, 27 Jul 2016 11:38:17 +0000 (13:38 +0200)]
#6000 Unify some PresenceAbsenceTerms (merge naturalized, rename adventitious -> casual, etc)
Patrick Plitzner [Mon, 25 Jul 2016 08:05:47 +0000 (10:05 +0200)]
Improve import report
Patrick Plitzner [Thu, 21 Jul 2016 19:14:15 +0000 (21:14 +0200)]
#5251 Fix Incorrect taxon source attachments