cdmlib.git
6 years agochange error message for isDeletable for taxa with relationships
Katja Luther [Thu, 25 Jan 2018 10:27:15 +0000 (11:27 +0100)]
change error message for isDeletable for taxa with relationships

6 years agofix Copy&Paste issue for isDeletableForTaxon
Andreas Müller [Thu, 25 Jan 2018 09:44:59 +0000 (10:44 +0100)]
fix Copy&Paste issue for isDeletableForTaxon

6 years agocleanup
Andreas Müller [Thu, 25 Jan 2018 09:31:36 +0000 (10:31 +0100)]
cleanup

6 years agofix #7158 Add pro parte misapplied name to the concept relationship types
Andreas Müller [Wed, 24 Jan 2018 23:10:09 +0000 (00:10 +0100)]
fix #7158 Add pro parte misapplied name to the concept relationship types

6 years agocleanup
Andreas Müller [Wed, 24 Jan 2018 13:03:56 +0000 (14:03 +0100)]
cleanup

6 years agoref #7214 warning notes in method doc
Andreas Kohlbecker [Wed, 24 Jan 2018 16:05:56 +0000 (17:05 +0100)]
ref #7214 warning notes in method doc

6 years agoref #7206 using generic method paramaters and return types in cacher classes
Andreas Kohlbecker [Wed, 24 Jan 2018 15:07:55 +0000 (16:07 +0100)]
ref #7206 using generic method paramaters and return types in cacher classes

6 years agolowering most loglevels to debug in cacher classes
Andreas Kohlbecker [Wed, 24 Jan 2018 14:34:11 +0000 (15:34 +0100)]
lowering most loglevels to debug in cacher classes

6 years agoMerge branch '#7206-CdmEntityCache' into develop
Andreas Kohlbecker [Wed, 24 Jan 2018 13:53:03 +0000 (14:53 +0100)]
Merge branch '#7206-CdmEntityCache' into develop

Conflicts resolved in:
  cdmlib-cache/src/main/java/eu/etaxonomy/cdm/cache/ProxyUtils.java

6 years agoref #7212 method documentation
Andreas Kohlbecker [Wed, 24 Jan 2018 12:35:53 +0000 (13:35 +0100)]
ref #7212 method documentation

6 years agoref #7206 EntityCacheDebugResult improved reporting
Andreas Kohlbecker [Wed, 24 Jan 2018 10:25:49 +0000 (11:25 +0100)]
ref #7206 EntityCacheDebugResult improved reporting

6 years agofix #7212 preventing loaded entities from being replaces by uninitialized proxies
Andreas Kohlbecker [Tue, 23 Jan 2018 13:14:14 +0000 (14:14 +0100)]
fix #7212 preventing loaded entities from being replaces by uninitialized proxies

6 years agoremoving @transient from non transient getters
Andreas Kohlbecker [Thu, 18 Jan 2018 16:48:18 +0000 (17:48 +0100)]
removing @transient from non transient getters

6 years agoref #7206 documenting
Andreas Kohlbecker [Mon, 22 Jan 2018 14:51:50 +0000 (15:51 +0100)]
ref #7206 documenting

6 years agoref #7206 migrating taxeditor entity cache into cdmlib module cdmlib-cache
Andreas Kohlbecker [Fri, 19 Jan 2018 16:23:04 +0000 (17:23 +0100)]
ref #7206 migrating taxeditor entity cache into cdmlib module cdmlib-cache
 - compiles
 - creates cdm.map.ser

6 years agoref #7206 EntityCacheDebugResult improved reporting #7206-CdmEntityCache origin/#7206-CdmEntityCache
Andreas Kohlbecker [Wed, 24 Jan 2018 10:25:49 +0000 (11:25 +0100)]
ref #7206 EntityCacheDebugResult improved reporting

6 years agofix #7212 preventing loaded entities from being replaces by uninitialized proxies
Andreas Kohlbecker [Tue, 23 Jan 2018 13:14:14 +0000 (14:14 +0100)]
fix #7212 preventing loaded entities from being replaces by uninitialized proxies

6 years agofix #6984 fix header writing for DwC-A export
Andreas Müller [Tue, 23 Jan 2018 09:42:44 +0000 (10:42 +0100)]
fix #6984 fix header writing for DwC-A export

6 years agocleanup
Andreas Müller [Mon, 22 Jan 2018 12:26:43 +0000 (13:26 +0100)]
cleanup

6 years agorevert unwanted changes
Andreas Müller [Mon, 22 Jan 2018 12:24:07 +0000 (13:24 +0100)]
revert unwanted changes

6 years agofix user handling in group service
Andreas Müller [Mon, 22 Jan 2018 12:21:41 +0000 (13:21 +0100)]
fix user handling in group service

6 years agoremove deprecated UserManager from IUserService
Andreas Müller [Mon, 22 Jan 2018 12:20:29 +0000 (13:20 +0100)]
remove deprecated UserManager from IUserService

6 years agofix removeUserFromGroup in GroupServiceImpl
Andreas Müller [Mon, 22 Jan 2018 09:54:39 +0000 (10:54 +0100)]
fix removeUserFromGroup in GroupServiceImpl

6 years agoremoving @transient from non transient getters
Andreas Kohlbecker [Thu, 18 Jan 2018 16:48:18 +0000 (17:48 +0100)]
removing @transient from non transient getters

6 years agoref #7206 documenting
Andreas Kohlbecker [Mon, 22 Jan 2018 14:51:50 +0000 (15:51 +0100)]
ref #7206 documenting

6 years agoadaptions in cdm light export
Katja Luther [Mon, 22 Jan 2018 12:43:22 +0000 (13:43 +0100)]
adaptions in cdm light export

6 years agocode cleaning
Katja Luther [Mon, 22 Jan 2018 12:03:18 +0000 (13:03 +0100)]
code cleaning

6 years agoadd test for export with unpublished taxa - continued
Katja Luther [Mon, 22 Jan 2018 12:01:06 +0000 (13:01 +0100)]
add test for export with unpublished taxa - continued

6 years agoadd test for export with unpublished taxa
Katja Luther [Mon, 22 Jan 2018 11:54:14 +0000 (12:54 +0100)]
add test for export with unpublished taxa

6 years agoadd test for export with unpublished taxa
Katja Luther [Mon, 22 Jan 2018 11:30:39 +0000 (12:30 +0100)]
add test for export with unpublished taxa

6 years agoref #7206 migrating taxeditor entity cache into cdmlib module cdmlib-cache
Andreas Kohlbecker [Fri, 19 Jan 2018 16:23:04 +0000 (17:23 +0100)]
ref #7206 migrating taxeditor entity cache into cdmlib module cdmlib-cache
 - compiles
 - creates cdm.map.ser

6 years agoattempt to prevent felix maven-bundle-plugin adding PluginNature to cdmlib-service...
Andreas Kohlbecker [Fri, 19 Jan 2018 14:09:58 +0000 (15:09 +0100)]
attempt to prevent felix maven-bundle-plugin adding PluginNature to cdmlib-service - bug fix

6 years agoadding more types to CdmPermissionClass
Andreas Kohlbecker [Thu, 18 Jan 2018 16:47:09 +0000 (17:47 +0100)]
adding more types to CdmPermissionClass

6 years agoattempt to prevent felix maven-bundle-plugin adding PluginNature to cdmlib-service
Andreas Kohlbecker [Thu, 18 Jan 2018 16:46:24 +0000 (17:46 +0100)]
attempt to prevent felix maven-bundle-plugin adding PluginNature to cdmlib-service

6 years agoref #7203 add performance debugging for TaxonNodeFilter.areaFilter
Andreas Müller [Thu, 18 Jan 2018 13:44:57 +0000 (14:44 +0100)]
ref #7203 add performance debugging for TaxonNodeFilter.areaFilter

6 years agocleanup
Andreas Müller [Thu, 18 Jan 2018 12:48:58 +0000 (13:48 +0100)]
cleanup

6 years agoImplement code dependent factory method for TaxonNameFactory
Andreas Müller [Thu, 18 Jan 2018 12:43:15 +0000 (13:43 +0100)]
Implement code dependent factory method for TaxonNameFactory

6 years agoref #7201, ref #7155 revert setting to final in CdmBase (was not on purpose)
Andreas Müller [Thu, 18 Jan 2018 11:16:43 +0000 (12:16 +0100)]
ref #7201, ref #7155  revert setting to final in CdmBase (was not on purpose)

6 years agoref #7201, ref #7155 javadoc
Andreas Müller [Thu, 18 Jan 2018 11:14:48 +0000 (12:14 +0100)]
ref #7201, ref #7155  javadoc

6 years agoref #7201, ref #7155 remove equals override also from OrderedTermBase
Andreas Müller [Thu, 18 Jan 2018 10:53:45 +0000 (11:53 +0100)]
ref #7201, ref #7155  remove equals override also from OrderedTermBase

6 years agoref #7201 remove created from equals and remove equals override in TermBase
Andreas Müller [Thu, 18 Jan 2018 10:45:13 +0000 (11:45 +0100)]
ref #7201 remove created from equals  and remove equals override in TermBase

* the new CdmBase.equals implementation should now be equivalent to old TermBase.equals

6 years agoref #7155 move final to VersionableEntity as some non-versionable classes still do...
Andreas Müller [Thu, 18 Jan 2018 10:33:04 +0000 (11:33 +0100)]
ref #7155 move final to VersionableEntity as some non-versionable classes still do have there own equals implementation

6 years agocleanup
Andreas Müller [Thu, 18 Jan 2018 09:55:11 +0000 (10:55 +0100)]
cleanup

6 years agominor
Andreas Müller [Thu, 18 Jan 2018 09:25:04 +0000 (10:25 +0100)]
minor

6 years agoref #7155, ref #7198, ref #7199 make Cdm.equals final
Andreas Müller [Thu, 18 Jan 2018 09:04:44 +0000 (10:04 +0100)]
ref #7155, ref #7198, ref #7199 make Cdm.equals final

 * remove sematically equal method from VersionableEntity
 * add javadoc to explain why it should be final
 * open issue: do we really need to compare created in equals ?

6 years agoCleanup
Andreas Müller [Thu, 18 Jan 2018 09:00:37 +0000 (10:00 +0100)]
Cleanup

6 years agoadd test for cdmLight export
Katja Luther [Thu, 18 Jan 2018 07:04:28 +0000 (08:04 +0100)]
add test for cdmLight export

6 years agoadd uuidAndTitleCache method to workingSetDao and Service class
Katja Luther [Wed, 17 Jan 2018 14:50:43 +0000 (15:50 +0100)]
add uuidAndTitleCache method to workingSetDao and Service class

6 years agoref #3533: new method to get only references with dedicated author
Katja Luther [Wed, 17 Jan 2018 14:34:37 +0000 (15:34 +0100)]
ref #3533: new method to get only references with dedicated author

6 years agowrite new getUuidAndTitleCache with limit and pattern for primer
Katja Luther [Wed, 17 Jan 2018 14:30:11 +0000 (15:30 +0100)]
write new getUuidAndTitleCache with limit and pattern for primer

6 years agomove getUuidAndTitleCache methods to identifiableService
Katja Luther [Wed, 17 Jan 2018 14:29:28 +0000 (15:29 +0100)]
move getUuidAndTitleCache methods to identifiableService

6 years agomove getUuidAndTitleCache methods to identifiableDao
Katja Luther [Wed, 17 Jan 2018 14:28:12 +0000 (15:28 +0100)]
move getUuidAndTitleCache methods to identifiableDao

6 years agonull check in TeamDefaultCacheStrategy needed sometimes in UIs
Andreas Kohlbecker [Wed, 17 Jan 2018 09:36:46 +0000 (10:36 +0100)]
null check in TeamDefaultCacheStrategy needed sometimes in UIs

6 years agoadding NAMERELATIONSHIP to CdmPermissionClass
Andreas Kohlbecker [Wed, 17 Jan 2018 07:32:53 +0000 (08:32 +0100)]
adding NAMERELATIONSHIP to CdmPermissionClass

6 years agoref #2335 Revert reverted workings set services changes
Patrick Plitzner [Tue, 16 Jan 2018 13:29:46 +0000 (14:29 +0100)]
ref #2335 Revert reverted workings set services changes

6 years agoref #7175 add test for DwcA Export if includeUnpublished works
Andreas Müller [Tue, 16 Jan 2018 14:37:55 +0000 (15:37 +0100)]
ref #7175 add test for DwcA Export if includeUnpublished works

6 years agofix #7180 fix #7175 refactor (CdmLight) and implementd (DwC-A) publish flag filtering
Andreas Müller [Tue, 16 Jan 2018 13:42:07 +0000 (14:42 +0100)]
fix #7180 fix #7175  refactor (CdmLight) and implementd (DwC-A) publish flag filtering

6 years agocleanup
Andreas Müller [Tue, 16 Jan 2018 13:40:06 +0000 (14:40 +0100)]
cleanup

6 years agoref #7166 remove distributions with absent status from filter results
Andreas Müller [Tue, 16 Jan 2018 13:02:29 +0000 (14:02 +0100)]
ref #7166  remove distributions with absent status from filter results

6 years agocleanup
Andreas Müller [Tue, 16 Jan 2018 13:00:58 +0000 (14:00 +0100)]
cleanup

6 years agoref #7086, #7095 Make setter public
Patrick Plitzner [Tue, 16 Jan 2018 12:44:49 +0000 (13:44 +0100)]
ref #7086, #7095 Make setter public

6 years agoref 7166 remove and-filter for areas as long as not requried
Andreas Müller [Tue, 16 Jan 2018 12:14:37 +0000 (13:14 +0100)]
ref 7166 remove and-filter for areas as long as not requried

6 years agoref #7175, ref #7180, ref #7165, ref #7166 Adapting TaxonNodeFilter for unpublished...
Andreas Müller [Tue, 16 Jan 2018 12:04:03 +0000 (13:04 +0100)]
ref #7175, ref  #7180, ref #7165, ref #7166  Adapting TaxonNodeFilter for unpublished, minMaxRank and areas

6 years agocleanup
Andreas Müller [Mon, 15 Jan 2018 21:56:19 +0000 (22:56 +0100)]
cleanup

6 years agoref #7175 renaming onlyPublishedTaxa to includeUnpublished and commenting it
Andreas Kohlbecker [Tue, 16 Jan 2018 08:53:55 +0000 (09:53 +0100)]
ref #7175 renaming onlyPublishedTaxa to includeUnpublished and commenting it

6 years agoref #7165 Add convenience constructors for taxon node filter
Patrick Plitzner [Mon, 15 Jan 2018 06:20:46 +0000 (07:20 +0100)]
ref #7165 Add convenience constructors for taxon node filter

6 years agoref #7175 using onlyPublishedTaxa in DWC-A Export controller
Andreas Kohlbecker [Mon, 15 Jan 2018 08:53:30 +0000 (09:53 +0100)]
ref #7175 using onlyPublishedTaxa in DWC-A Export controller

6 years agoadd attr. onlyPublishedTaxa to exportConfigurator and CdmLightExport
Katja Luther [Mon, 15 Jan 2018 08:35:15 +0000 (09:35 +0100)]
add attr. onlyPublishedTaxa to exportConfigurator and CdmLightExport

6 years agoimplementing support for Group and GrantedAuthorityImpl in CdmPermissionClass
Andreas Kohlbecker [Mon, 15 Jan 2018 07:16:07 +0000 (08:16 +0100)]
implementing support for Group and GrantedAuthorityImpl in CdmPermissionClass

6 years agofix #7166 fixing test
Andreas Müller [Fri, 12 Jan 2018 11:46:33 +0000 (12:46 +0100)]
fix #7166 fixing test

6 years agofix #7166 temporarily fixing test
Patrick Plitzner [Fri, 12 Jan 2018 11:11:22 +0000 (12:11 +0100)]
fix #7166 temporarily fixing test

6 years agofix #7173 RegistrationDao methods support for sections (with test)
Andreas Kohlbecker [Fri, 12 Jan 2018 10:36:43 +0000 (11:36 +0100)]
fix #7173 RegistrationDao methods support for sections (with test)

6 years agoMerge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Fri, 12 Jan 2018 09:09:44 +0000 (10:09 +0100)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

6 years agodelete taxonNodes improved
Katja Luther [Fri, 12 Jan 2018 09:09:08 +0000 (10:09 +0100)]
delete taxonNodes improved

6 years agofix #7166 code restructuring
Patrick Plitzner [Fri, 12 Jan 2018 08:12:59 +0000 (09:12 +0100)]
fix #7166 code restructuring

6 years agofix #7165, #7166 Add ranks to reset method
Patrick Plitzner [Fri, 12 Jan 2018 08:12:28 +0000 (09:12 +0100)]
fix #7165, #7166 Add ranks to reset method

6 years agofix #7165, #7166 Add singleton constructor for rank
Patrick Plitzner [Fri, 12 Jan 2018 07:20:07 +0000 (08:20 +0100)]
fix #7165, #7166 Add singleton constructor for rank

 - remove unused methods

6 years agofix #7166 Implement area filter for TaxonNodeFilter
Patrick Plitzner [Fri, 12 Jan 2018 07:08:51 +0000 (08:08 +0100)]
fix #7166 Implement area filter for TaxonNodeFilter

6 years agoref #7165 Fix potential NPE
Patrick Plitzner [Fri, 12 Jan 2018 05:33:54 +0000 (06:33 +0100)]
ref #7165 Fix potential NPE

6 years agoref #7165 Add rank filter to TaxonNodeFilter
Patrick Plitzner [Thu, 11 Jan 2018 13:45:39 +0000 (14:45 +0100)]
ref #7165 Add rank filter to TaxonNodeFilter

 - Added JUnit test

6 years agoFix typo
Patrick Plitzner [Thu, 11 Jan 2018 11:20:13 +0000 (12:20 +0100)]
Fix typo

6 years agoMerge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Thu, 11 Jan 2018 11:01:00 +0000 (12:01 +0100)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

6 years agoadd possibility to move more than one taxon as synonym to another taxon
Katja Luther [Thu, 11 Jan 2018 11:00:28 +0000 (12:00 +0100)]
add possibility to move more than one taxon as synonym to another taxon

6 years agoFix doc of isPartial
unknown [Mon, 8 Jan 2018 11:31:17 +0000 (12:31 +0100)]
Fix doc of isPartial

6 years agoadd proparte synonym information to csv light export
Katja Luther [Mon, 8 Jan 2018 08:23:41 +0000 (09:23 +0100)]
add proparte synonym information to csv light export

6 years agoref #7094 revert remove space between initials and name in nomencl. person title...
unknown [Fri, 5 Jan 2018 13:21:18 +0000 (14:21 +0100)]
ref #7094 revert remove space between initials and name in nomencl. person title as default

6 years agoMerge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Fri, 5 Jan 2018 09:52:59 +0000 (10:52 +0100)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

6 years agoIntextReference getClass needs to be public
Katja Luther [Fri, 5 Jan 2018 09:52:22 +0000 (10:52 +0100)]
IntextReference getClass needs to be public

6 years agocleanup
unknown [Fri, 5 Jan 2018 09:20:43 +0000 (10:20 +0100)]
cleanup

6 years agoref #6965 revert remove space between initials and name in nomencl. person title...
unknown [Fri, 5 Jan 2018 09:18:02 +0000 (10:18 +0100)]
ref #6965 revert remove space between initials and name in nomencl. person title as default

6 years agocleanup
unknown [Fri, 5 Jan 2018 09:17:20 +0000 (10:17 +0100)]
cleanup

6 years agolowering loglevels
Andreas Kohlbecker [Fri, 22 Dec 2017 15:12:37 +0000 (16:12 +0100)]
lowering loglevels

6 years agoref #7150 implementing CollectionVoter and adding new default PermissionGroup 'Editor...
Andreas Kohlbecker [Fri, 22 Dec 2017 14:57:27 +0000 (15:57 +0100)]
ref #7150 implementing CollectionVoter and adding new default PermissionGroup 'EditorExtendedCreate'

6 years agoref #6867 extending the CdmPermissionClass enum and CdmAuthority support for sets
Andreas Kohlbecker [Thu, 21 Dec 2017 09:41:58 +0000 (10:41 +0100)]
ref #6867 extending the CdmPermissionClass enum and CdmAuthority support for sets

6 years agonote on prospective better solution for implementing the hibernate integrator for...
Andreas Kohlbecker [Wed, 20 Dec 2017 14:15:06 +0000 (15:15 +0100)]
note on prospective better solution for implementing the hibernate integrator for the cdmlib

6 years agoref #7121: when no vocabulary is chosen, all vocabularies are searched in NamedAreaSe...
Katja Luther [Tue, 19 Dec 2017 14:52:04 +0000 (15:52 +0100)]
ref #7121: when no vocabulary is chosen, all vocabularies are searched in NamedAreaSelection

6 years agoref #7114 fixing bug in DerivedUnitConverterIntegrationTest and NPE in DerivedUnitCon...
Andreas Kohlbecker [Mon, 18 Dec 2017 15:19:18 +0000 (16:19 +0100)]
ref #7114 fixing bug in DerivedUnitConverterIntegrationTest and NPE in DerivedUnitConverter

6 years agoref #7114 fixing delete problems in DerivedUnitConverter and adding according test
Andreas Kohlbecker [Mon, 18 Dec 2017 14:22:47 +0000 (15:22 +0100)]
ref #7114 fixing delete problems in DerivedUnitConverter and adding according test

6 years agoref #7114 fixing probelms of test in suite (relates also to ref #7138)
Andreas Kohlbecker [Mon, 18 Dec 2017 10:56:23 +0000 (11:56 +0100)]
ref #7114 fixing probelms of test in suite (relates also to ref #7138)

6 years agoref #7105 logging the calls to factory.openSession() as error
Andreas Kohlbecker [Mon, 18 Dec 2017 10:54:11 +0000 (11:54 +0100)]
ref #7105 logging the calls to factory.openSession() as error