cdmlib.git
8 years ago#5187 Add move methods with uuids as args
Cherian Mathew [Thu, 3 Sep 2015 17:06:26 +0000 (19:06 +0200)]
#5187 Add move methods with uuids as args

8 years agoCorrect setting of status when moving derivates
Cherian Mathew [Thu, 3 Sep 2015 16:42:52 +0000 (18:42 +0200)]
Correct setting of status when moving derivates

8 years agoMake new move method write on commit
Cherian Mathew [Thu, 3 Sep 2015 16:23:24 +0000 (18:23 +0200)]
Make new move method write on commit

8 years agoRevert back move method with entities as arguments
Cherian Mathew [Thu, 3 Sep 2015 15:54:01 +0000 (17:54 +0200)]
Revert back move method with entities as arguments

8 years ago#5188 Fix issues with deleting specimens , sequences, single reads
Cherian Mathew [Thu, 3 Sep 2015 13:35:47 +0000 (15:35 +0200)]
#5188 Fix issues with deleting specimens , sequences, single reads

8 years agoadapting test to modified test data
Andreas Kohlbecker [Wed, 2 Sep 2015 13:49:57 +0000 (15:49 +0200)]
adapting test to modified test data

8 years agofixing broken pager mechanism for listRankSpecificRootNodes() and improving test...
Andreas Kohlbecker [Wed, 2 Sep 2015 13:27:10 +0000 (15:27 +0200)]
fixing broken pager mechanism for listRankSpecificRootNodes() and improving test coverage

8 years agoremoving System.out.println
Andreas Kohlbecker [Wed, 2 Sep 2015 09:47:40 +0000 (11:47 +0200)]
removing System.out.println

8 years ago#5177 out-commented code snipped to enable sql logging for performance debugging
Andreas Kohlbecker [Tue, 1 Sep 2015 13:01:42 +0000 (15:01 +0200)]
#5177 out-commented code snipped to enable sql logging for performance debugging

8 years agotypo in comment
Andreas Kohlbecker [Tue, 1 Sep 2015 13:00:06 +0000 (15:00 +0200)]
typo in comment

8 years agoset the test to ignore, because the funcionality is not implemented yet.
k.luther [Wed, 2 Sep 2015 09:44:17 +0000 (11:44 +0200)]
set the test to ignore, because the funcionality is not implemented yet.

8 years agorevert the local changes
k.luther [Wed, 2 Sep 2015 09:16:59 +0000 (11:16 +0200)]
revert the local changes

8 years agominor
Katja Luther [Wed, 2 Sep 2015 08:43:52 +0000 (10:43 +0200)]
minor

8 years agoEnhance ABCD import report
Patrick Plitzner [Wed, 2 Sep 2015 09:08:05 +0000 (11:08 +0200)]
Enhance ABCD import report

8 years agoadding a convertmergeStrategy because of a different handling of merge and convert
Katja Luther [Wed, 2 Sep 2015 08:42:12 +0000 (10:42 +0200)]
adding a convertmergeStrategy because of a different handling of merge and convert

8 years agochanges for tcs import, fixing taxonnodecomparator, polytomouskey deletion and conver...
Katja Luther [Wed, 2 Sep 2015 08:40:02 +0000 (10:40 +0200)]
changes for tcs import, fixing taxonnodecomparator, polytomouskey deletion and converting from person to team and team to person

8 years agoadding a ConvertMergeStrategy
k.luther [Wed, 2 Sep 2015 08:37:58 +0000 (10:37 +0200)]
adding a ConvertMergeStrategy

8 years agoMerge branch 'develop' into abcd abcd origin/abcd root/branches/cdmlib/abcd
Patrick Plitzner [Tue, 1 Sep 2015 09:53:03 +0000 (11:53 +0200)]
Merge branch 'develop' into abcd

8 years ago#5040 - adding parameters to transmission engine webservice to set targetAreaLevel... attic/branches/cdmlib/develop/25404
Andreas Kohlbecker [Tue, 1 Sep 2015 09:25:52 +0000 (11:25 +0200)]
#5040 - adding parameters to transmission engine webservice to set targetAreaLevel, lowerRank & upperRank

8 years agoAdd test for non-parsabel taxon name
Patrick Plitzner [Tue, 1 Sep 2015 06:24:56 +0000 (08:24 +0200)]
Add test for non-parsabel taxon name

8 years agoRefine rank parsing
Patrick Plitzner [Tue, 1 Sep 2015 06:24:09 +0000 (08:24 +0200)]
Refine rank parsing

 - if rank cannot be parsed the taxon will be created as is with a
single taxon node without any parent taxon node but the classification
itself
 - some code refactoring
 - avoid NPEs

8 years ago#5112 - hiding fall back areas from the hierachchic distribution representation
Andreas Kohlbecker [Mon, 31 Aug 2015 21:08:41 +0000 (23:08 +0200)]
#5112 - hiding fall back areas from the hierachchic distribution representation

8 years agoAdd new test for name parsing
Patrick Plitzner [Mon, 31 Aug 2015 13:50:42 +0000 (15:50 +0200)]
Add new test for name parsing

8 years agoIncrease reference titlecache in test DBs
Patrick Plitzner [Mon, 31 Aug 2015 13:50:27 +0000 (15:50 +0200)]
Increase reference titlecache in test DBs

8 years ago#5070 - adding missing part in init stategy for second level derivatives
Andreas Kohlbecker [Mon, 31 Aug 2015 09:45:51 +0000 (11:45 +0200)]
#5070 - adding missing part in init stategy for second level derivatives

8 years agoReplace load with findByUuid for delete with uuid(s) as argument.
Cherian Mathew [Thu, 27 Aug 2015 16:07:06 +0000 (18:07 +0200)]
Replace load with findByUuid for delete with uuid(s) as argument.

8 years ago#5161 Add initListener method to CdmBase object
Cherian Mathew [Thu, 27 Aug 2015 14:13:56 +0000 (16:13 +0200)]
#5161 Add initListener method to CdmBase object

8 years agoadd @Audited to startNumber
U-BGBM\k.luther [Wed, 26 Aug 2015 10:36:19 +0000 (12:36 +0200)]
add @Audited to startNumber

8 years agochanges for deleting polytomous key nodes
U-BGBM\k.luther [Tue, 25 Aug 2015 11:56:02 +0000 (13:56 +0200)]
changes for deleting polytomous key nodes

8 years ago#5160 Add new merge method with id's as arguments
Cherian Mathew [Tue, 25 Aug 2015 11:03:22 +0000 (13:03 +0200)]
#5160 Add new merge method with id's as arguments

8 years agominor
Andreas Müller [Fri, 21 Aug 2015 08:48:59 +0000 (10:48 +0200)]
minor

8 years agoAdapt rank split for CoL to higher>species
Andreas Müller [Thu, 20 Aug 2015 18:54:23 +0000 (20:54 +0200)]
Adapt rank split for CoL to higher>species

8 years agoFix CoL import (taxon relationship split)
Andreas Müller [Wed, 19 Aug 2015 17:36:29 +0000 (19:36 +0200)]
Fix CoL import (taxon relationship split)

8 years agoEnhance ignored import due to already existing specimens
Patrick Plitzner [Wed, 19 Aug 2015 06:44:51 +0000 (08:44 +0200)]
Enhance ignored import due to already existing specimens

8 years agoCheck capabilites of BioCase provider for supported ABCD schemas
Patrick Plitzner [Mon, 17 Aug 2015 15:54:52 +0000 (17:54 +0200)]
Check capabilites of BioCase provider for supported ABCD schemas

8 years agoFix broken test
Patrick Plitzner [Wed, 12 Aug 2015 13:31:41 +0000 (15:31 +0200)]
Fix broken test

8 years agoadding saving of synonym and taxon for swapSynonymAndAcceptedTaxon
Katja Luther [Wed, 12 Aug 2015 08:55:09 +0000 (10:55 +0200)]
adding saving of synonym and taxon for swapSynonymAndAcceptedTaxon

8 years agowhitespace
Katja Luther [Thu, 16 Jul 2015 13:33:27 +0000 (15:33 +0200)]
whitespace

8 years agoFix UniqueKey issue for sequence ciations
Patrick Plitzner [Wed, 12 Aug 2015 08:37:57 +0000 (10:37 +0200)]
Fix UniqueKey issue for sequence ciations

8 years agominor
Andreas Müller [Fri, 7 Aug 2015 15:34:00 +0000 (17:34 +0200)]
minor

8 years agoAdding filter functionality to stream converter (not yet ready)
Andreas Müller [Fri, 7 Aug 2015 15:24:03 +0000 (17:24 +0200)]
Adding filter functionality to stream converter (not yet ready)

8 years agoRevert final qualifier after discussion in #5102
Cherian Mathew [Fri, 7 Aug 2015 14:05:51 +0000 (16:05 +0200)]
Revert final qualifier after discussion in #5102

8 years ago#5130 Extend cdmlib import architecture to allow for remoting and Add import methods...
Cherian Mathew [Thu, 6 Aug 2015 13:57:00 +0000 (15:57 +0200)]
#5130 Extend cdmlib import architecture to allow for remoting and Add import methods to IOService

8 years ago#5129 Extend export classes to allow for remote exports ticket-5129 origin/ticket-5129 root/branches/cdmlib/ticket-5129
Cherian Mathew [Tue, 4 Aug 2015 16:29:08 +0000 (18:29 +0200)]
#5129 Extend export classes to allow for remote exports

8 years agoCorrect default cache initialisation attic/branches/cdmlib/develop/25249
Cherian Mathew [Thu, 30 Jul 2015 08:26:59 +0000 (10:26 +0200)]
Correct default cache initialisation

8 years ago#2988 avoiding NPE and allowing empty omitlevels (bug fix)
Andreas Kohlbecker [Fri, 24 Jul 2015 14:23:19 +0000 (16:23 +0200)]
#2988 avoiding NPE and allowing empty omitlevels (bug fix)

8 years agoRemove filter from stream partitioner
Andreas Müller [Fri, 24 Jul 2015 13:13:57 +0000 (15:13 +0200)]
Remove filter from stream partitioner

8 years agominor code cleaning
Andreas Kohlbecker [Fri, 24 Jul 2015 07:55:06 +0000 (09:55 +0200)]
minor code cleaning

8 years ago#4408 fixing a bug regarding fallback areas and adding more tests
Andreas Kohlbecker [Thu, 23 Jul 2015 14:07:12 +0000 (16:07 +0200)]
#4408 fixing a bug regarding fallback areas and adding more tests

8 years agoadding IdInVocabulary to the toString representation of NamedAreas
Andreas Kohlbecker [Thu, 23 Jul 2015 13:24:52 +0000 (15:24 +0200)]
adding IdInVocabulary to the toString representation of NamedAreas

8 years ago#4408 removing occurences of fallbackAreaMarkerType in methods and renaming parameter...
Andreas Kohlbecker [Thu, 23 Jul 2015 11:34:59 +0000 (13:34 +0200)]
#4408 removing occurences of fallbackAreaMarkerType in methods and renaming parameter in controller

8 years ago#4408 - updating documentation on Marked area filter regarding fallback areas
Andreas Kohlbecker [Thu, 23 Jul 2015 08:23:09 +0000 (10:23 +0200)]
#4408 - updating documentation on Marked area filter regarding fallback areas

8 years agomerging fallbackAreaFilter rule into hiddenArea rule
Andreas Kohlbecker [Tue, 21 Jul 2015 15:07:29 +0000 (17:07 +0200)]
merging fallbackAreaFilter rule into hiddenArea rule

8 years agoall rules separated
Andreas Kohlbecker [Fri, 17 Jul 2015 19:54:17 +0000 (21:54 +0200)]
all rules separated

8 years agominor refactoring
Andreas Kohlbecker [Fri, 17 Jul 2015 19:13:36 +0000 (21:13 +0200)]
minor refactoring

8 years agodisnetangling DescriptionUtility.filterDistributions()
Andreas Kohlbecker [Fri, 17 Jul 2015 18:55:19 +0000 (20:55 +0200)]
disnetangling DescriptionUtility.filterDistributions()

8 years agofixing broken pager of getNamedAreasInUse
Andreas Kohlbecker [Fri, 17 Jul 2015 17:38:50 +0000 (19:38 +0200)]
fixing broken pager of getNamedAreasInUse

8 years ago#5100 Fix default language for remoting attic/branches/cdmlib/abcd/25392
Cherian Mathew [Wed, 22 Jul 2015 13:54:17 +0000 (15:54 +0200)]
#5100 Fix default language for remoting

8 years agoFix delete to return null if node corresponding to uuid does not exist
Cherian Mathew [Wed, 22 Jul 2015 13:19:27 +0000 (15:19 +0200)]
Fix delete to return null if node corresponding to uuid does not exist

8 years agoIntialise addresses in declaration to avoid orphan cascade issue
Cherian Mathew [Wed, 22 Jul 2015 12:23:50 +0000 (14:23 +0200)]
Intialise addresses in declaration to avoid orphan cascade issue

8 years agoAvoid concurrent modification during deep delete.
Patrick Plitzner [Wed, 22 Jul 2015 09:07:23 +0000 (11:07 +0200)]
Avoid concurrent modification during deep delete.

 - cloned derivation events of child derivatives
 - added test

8 years agoAdd support for ABCD 2.0.6 in UnitAssociationParser attic/branches/cdmlib/abcd/25197
Patrick Plitzner [Mon, 20 Jul 2015 15:32:22 +0000 (17:32 +0200)]
Add support for ABCD 2.0.6 in UnitAssociationParser

8 years ago# WARNING: head commit changed in the meantime
Patrick Plitzner [Mon, 20 Jul 2015 06:27:25 +0000 (08:27 +0200)]
# WARNING: head commit changed in the meantime

Log ignored specimens in import report

8 years agoAdd find method which can be filtered to update editor session attic/branches/cdmlib/abcd/25158
Cherian Mathew [Mon, 20 Jul 2015 13:35:12 +0000 (15:35 +0200)]
Add find method which can be filtered to update editor session

8 years ago#5067 Updates for remoting derivate hierachy views
Cherian Mathew [Fri, 10 Jul 2015 08:32:10 +0000 (10:32 +0200)]
#5067 Updates for remoting derivate hierachy views

8 years ago#5067 Add sequence service to httpinvoker list
Cherian Mathew [Tue, 7 Jul 2015 12:11:59 +0000 (14:11 +0200)]
#5067 Add sequence service to httpinvoker list

8 years agoCorrect test to save taxon before making servive layer call
Cherian Mathew [Mon, 20 Jul 2015 08:06:08 +0000 (10:06 +0200)]
Correct test to save taxon before making servive layer call

8 years agoAllow DwC-A import to filter streams and fix database mapping
Andreas Müller [Sun, 19 Jul 2015 23:27:07 +0000 (01:27 +0200)]
Allow DwC-A import to filter streams and fix database mapping

8 years agoFix preliminary 2 capitel author parsing #5096
Andreas Müller [Sun, 19 Jul 2015 23:25:23 +0000 (01:25 +0200)]
Fix preliminary 2 capitel author parsing #5096

8 years agoUpdate service layer calls to use uuids, Add property paths to find call for performa...
Cherian Mathew [Fri, 17 Jul 2015 13:41:54 +0000 (15:41 +0200)]
Update service layer calls to use uuids, Add property paths to find call for performance tuning

8 years ago#5095 Add @Ignore to failing tests for now
Cherian Mathew [Fri, 17 Jul 2015 12:46:02 +0000 (14:46 +0200)]
#5095 Add @Ignore to failing tests for now

8 years agoFix long running parser #5072
Andreas Müller [Fri, 17 Jul 2015 12:24:39 +0000 (14:24 +0200)]
Fix long running parser #5072

8 years agoFix for export
Cherian Mathew [Fri, 17 Jul 2015 11:41:20 +0000 (13:41 +0200)]
Fix for export

8 years agoPreliminary fix long runnig parser test
Andreas Müller [Thu, 16 Jul 2015 23:49:38 +0000 (01:49 +0200)]
Preliminary fix long runnig parser test

8 years agoAdd commented test for long running parsing #5072
Andreas Müller [Thu, 16 Jul 2015 23:23:43 +0000 (01:23 +0200)]
Add commented test for long running parsing  #5072

8 years agoUse ampersand as default for et al. teams #5093
Andreas Müller [Thu, 16 Jul 2015 23:22:53 +0000 (01:22 +0200)]
Use ampersand as default for et al. teams  #5093

8 years agoUpdating develop poms back to pre merge state
jenkins [Thu, 16 Jul 2015 14:21:51 +0000 (16:21 +0200)]
Updating develop poms back to pre merge state

8 years agoMerge branch 'master' into develop
jenkins [Thu, 16 Jul 2015 14:21:50 +0000 (16:21 +0200)]
Merge branch 'master' into develop

8 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 16 Jul 2015 14:21:49 +0000 (16:21 +0200)]
updating develop poms to master versions to avoid merge conflicts

8 years agoMerge branch 'release/3.7.0' root/tags/cdmlib/3.7.0 3.7.0
jenkins [Thu, 16 Jul 2015 14:21:45 +0000 (16:21 +0200)]
Merge branch 'release/3.7.0'

8 years agoupdating poms for branch'release/3.7.0' with non-snapshot versions
jenkins [Thu, 16 Jul 2015 14:05:52 +0000 (16:05 +0200)]
updating poms for branch'release/3.7.0' with non-snapshot versions

8 years agoupdating poms for 3.8.0-SNAPSHOT development
jenkins [Thu, 16 Jul 2015 13:27:40 +0000 (15:27 +0200)]
updating poms for 3.8.0-SNAPSHOT development

8 years agoRevert back to earlier version
Cherian Mathew [Thu, 16 Jul 2015 13:20:47 +0000 (15:20 +0200)]
Revert back to earlier version

8 years agoFix taxon node comparator handling #4226
Andreas Müller [Thu, 16 Jul 2015 11:38:33 +0000 (13:38 +0200)]
Fix taxon node comparator handling #4226

8 years agoindex on master: 945061f Fix long running name parser problem #5072
Andreas Müller [Mon, 13 Jul 2015 11:09:06 +0000 (13:09 +0200)]
index on master: 945061f Fix long running name parser problem  #5072

8 years agoUpdating develop poms back to pre merge state
jenkins [Wed, 15 Jul 2015 16:10:52 +0000 (18:10 +0200)]
Updating develop poms back to pre merge state

8 years agoMerge branch 'master' into develop
jenkins [Wed, 15 Jul 2015 16:10:51 +0000 (18:10 +0200)]
Merge branch 'master' into develop

8 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 15 Jul 2015 16:10:50 +0000 (18:10 +0200)]
updating develop poms to master versions to avoid merge conflicts

8 years agoMerge branch 'release/3.7.0' attic/tags/cdmlib/3.7.0/24929
jenkins [Wed, 15 Jul 2015 16:10:45 +0000 (18:10 +0200)]
Merge branch 'release/3.7.0'

8 years agoupdating poms for branch'release/3.7.0' with non-snapshot versions
jenkins [Wed, 15 Jul 2015 15:54:23 +0000 (17:54 +0200)]
updating poms for branch'release/3.7.0' with non-snapshot versions

8 years agoupdating poms for 3.8.0-SNAPSHOT development
jenkins [Wed, 15 Jul 2015 15:52:33 +0000 (17:52 +0200)]
updating poms for 3.8.0-SNAPSHOT development

8 years agousing the project.version for the cdmlib dependencies
Andreas Kohlbecker [Wed, 15 Jul 2015 15:41:24 +0000 (17:41 +0200)]
using the project.version for the cdmlib dependencies

8 years agoRemove unnecessary version property in sub-modules
Cherian Mathew [Wed, 15 Jul 2015 13:02:18 +0000 (15:02 +0200)]
Remove unnecessary version property in sub-modules

8 years agoRevert back to version 3.7.0-SNAPSHOT
Cherian Mathew [Wed, 15 Jul 2015 12:32:06 +0000 (14:32 +0200)]
Revert back to version 3.7.0-SNAPSHOT

8 years agoUpdating develop poms back to pre merge state
jenkins [Wed, 15 Jul 2015 12:00:47 +0000 (14:00 +0200)]
Updating develop poms back to pre merge state

8 years agoMerge branch 'master' into develop
jenkins [Wed, 15 Jul 2015 12:00:46 +0000 (14:00 +0200)]
Merge branch 'master' into develop

8 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 15 Jul 2015 12:00:45 +0000 (14:00 +0200)]
updating develop poms to master versions to avoid merge conflicts

8 years agoMerge branch 'release/3.7.0'
jenkins [Wed, 15 Jul 2015 12:00:41 +0000 (14:00 +0200)]
Merge branch 'release/3.7.0'

8 years agoupdating poms for branch'release/3.7.0' with non-snapshot versions
jenkins [Wed, 15 Jul 2015 11:46:16 +0000 (13:46 +0200)]
updating poms for branch'release/3.7.0' with non-snapshot versions

8 years agoupdating poms for 3.8.0-SNAPSHOT development
jenkins [Wed, 15 Jul 2015 11:42:40 +0000 (13:42 +0200)]
updating poms for 3.8.0-SNAPSHOT development