cdmlib.git
10 years agominor
Andreas Müller [Thu, 17 Oct 2013 21:36:05 +0000 (21:36 +0000)]
minor

10 years agominor
Andreas Müller [Thu, 17 Oct 2013 21:34:45 +0000 (21:34 +0000)]
minor

10 years agofixed problem in testDeleteSynonymrelationship by using loadStrategy=CleanSweepInsert...
Katja Luther [Thu, 17 Oct 2013 09:14:20 +0000 (09:14 +0000)]
fixed problem in testDeleteSynonymrelationship by using loadStrategy=CleanSweepInsertLoadStragtegy

10 years agofixing #3797 (StaleStateException caused during taxonNodeService.makeTaxonNodeASynon...
Andreas Kohlbecker [Wed, 16 Oct 2013 21:16:57 +0000 (21:16 +0000)]
fixing  #3797 (StaleStateException caused during taxonNodeService.makeTaxonNodeASynonymOfAnotherTaxonNode())

10 years agodocumentation
Andreas Kohlbecker [Wed, 16 Oct 2013 21:16:53 +0000 (21:16 +0000)]
documentation

10 years agoavoiding concurrent modification exception
Andreas Kohlbecker [Wed, 16 Oct 2013 21:16:50 +0000 (21:16 +0000)]
avoiding concurrent modification exception

10 years agowhitespace
Andreas Kohlbecker [Wed, 16 Oct 2013 21:16:46 +0000 (21:16 +0000)]
whitespace

10 years agospeeding up the permission voting by caching CdmAuthorities in a map per authority...
Andreas Kohlbecker [Wed, 16 Oct 2013 21:16:44 +0000 (21:16 +0000)]
speeding up the permission voting by caching CdmAuthorities in a map per authority string

10 years agofixing #3792 (permission problem when turning a taxon into a synonmy of another taxon)
Andreas Kohlbecker [Wed, 16 Oct 2013 14:42:43 +0000 (14:42 +0000)]
fixing #3792 (permission problem when turning a taxon into a synonmy of another taxon)

10 years agominor
Andreas Müller [Wed, 16 Oct 2013 14:19:57 +0000 (14:19 +0000)]
minor

10 years agoDescriptionElementVoter abstains is furtherDecision is un-decidable
Andreas Kohlbecker [Tue, 15 Oct 2013 14:23:27 +0000 (14:23 +0000)]
DescriptionElementVoter abstains is furtherDecision is un-decidable

10 years ago(no commit message)
Katja Luther [Tue, 15 Oct 2013 11:57:38 +0000 (11:57 +0000)]

10 years agofixed problem with deletion of nodes.
Katja Luther [Tue, 15 Oct 2013 11:34:10 +0000 (11:34 +0000)]
fixed problem with deletion of nodes.

10 years agofixing bug in TaxonNodeVoter
Andreas Kohlbecker [Tue, 15 Oct 2013 09:12:48 +0000 (09:12 +0000)]
fixing bug in TaxonNodeVoter

10 years agominor cleanup
Andreas Müller [Mon, 14 Oct 2013 21:46:01 +0000 (21:46 +0000)]
minor cleanup

10 years agofix reference validation for Berlin Model import
Andreas Müller [Mon, 14 Oct 2013 21:08:03 +0000 (21:08 +0000)]
fix reference validation for Berlin Model import

10 years agoremove imports
Andreas Müller [Mon, 14 Oct 2013 16:43:01 +0000 (16:43 +0000)]
remove imports

10 years agoimplement publish marker for BM import
Andreas Müller [Mon, 14 Oct 2013 15:54:17 +0000 (15:54 +0000)]
implement publish marker for BM import

10 years agoSome updates to Berlin MOdel import validation
Andreas Müller [Mon, 14 Oct 2013 15:50:11 +0000 (15:50 +0000)]
Some updates to Berlin MOdel import validation

10 years agojavadoc for tree index constants
Andreas Müller [Mon, 14 Oct 2013 15:04:49 +0000 (15:04 +0000)]
javadoc for tree index constants

10 years agoadd sortindex again to classification rootnodes which has been accidentely deleted.
Andreas Müller [Mon, 14 Oct 2013 14:32:02 +0000 (14:32 +0000)]
add sortindex again to classification rootnodes which has been accidentely deleted.

10 years agominor
Andreas Müller [Mon, 14 Oct 2013 13:05:38 +0000 (13:05 +0000)]
minor

10 years agofix problem with duplicates for annotations in Berlin Model import #3195
Andreas Müller [Mon, 14 Oct 2013 12:51:36 +0000 (12:51 +0000)]
fix problem with duplicates for annotations in Berlin Model import  #3195

10 years agominor
Andreas Müller [Mon, 14 Oct 2013 12:15:15 +0000 (12:15 +0000)]
minor

10 years agoremove duplicates from TaxonNode children
Andreas Müller [Mon, 14 Oct 2013 11:18:27 +0000 (11:18 +0000)]
remove duplicates from TaxonNode children

10 years agominor changes for common names and occurrences in Berlin Model import
Andreas Müller [Mon, 14 Oct 2013 11:17:53 +0000 (11:17 +0000)]
minor changes for common names and occurrences in Berlin Model import

10 years agominor
Andreas Müller [Fri, 11 Oct 2013 22:26:49 +0000 (22:26 +0000)]
minor

10 years agouse euroMed areas and some minor clean up; enable authentication for user import
Andreas Müller [Fri, 11 Oct 2013 13:23:43 +0000 (13:23 +0000)]
use euroMed areas and some minor clean up; enable authentication for user import

10 years agoupdating doumentation on CdmAuthority syntax - adding brackets []
Andreas Kohlbecker [Fri, 11 Oct 2013 13:02:34 +0000 (13:02 +0000)]
updating doumentation on CdmAuthority syntax - adding brackets []

10 years agofixing #3786 (Taxon editor view is not enabled even if a user has sufficient permissions)
Andreas Kohlbecker [Fri, 11 Oct 2013 13:02:33 +0000 (13:02 +0000)]
fixing #3786 (Taxon editor view is not enabled even if a user has sufficient permissions)

10 years agominor
Andreas Müller [Fri, 11 Oct 2013 11:28:34 +0000 (11:28 +0000)]
minor

10 years agomaking sure users to be authenticated are alays up to date
Andreas Kohlbecker [Fri, 11 Oct 2013 09:24:17 +0000 (09:24 +0000)]
making sure users to be authenticated are alays up to date

10 years agoupdating documentation
Andreas Kohlbecker [Fri, 11 Oct 2013 09:24:12 +0000 (09:24 +0000)]
updating documentation

10 years agoadapt BerlinModel import to new abbrev reference title, all done except for authorStr...
Andreas Müller [Thu, 10 Oct 2013 22:34:32 +0000 (22:34 +0000)]
adapt BerlinModel import to new abbrev reference title, all done except for authorString deduplication

10 years agoAdd Application Controller example
Andreas Müller [Thu, 10 Oct 2013 14:05:00 +0000 (14:05 +0000)]
Add Application Controller example

10 years agoAdd Application Controller example
Andreas Müller [Thu, 10 Oct 2013 14:00:37 +0000 (14:00 +0000)]
Add Application Controller example

10 years agohandle infinite recursion in markup keys
Andreas Müller [Wed, 9 Oct 2013 16:45:05 +0000 (16:45 +0000)]
handle infinite recursion in markup keys

10 years agohandle no parent last nodes
Andreas Müller [Wed, 9 Oct 2013 16:39:35 +0000 (16:39 +0000)]
handle no parent last nodes

10 years agohandle mods:partName
Andreas Müller [Wed, 9 Oct 2013 16:38:46 +0000 (16:38 +0000)]
handle mods:partName

10 years agohandle long common names
Andreas Müller [Wed, 9 Oct 2013 16:37:32 +0000 (16:37 +0000)]
handle long common names

10 years agohandle infinite recursion for node numbering
Andreas Müller [Wed, 9 Oct 2013 16:33:01 +0000 (16:33 +0000)]
handle infinite recursion for node numbering

10 years agonew factory method for TextData
Andreas Müller [Wed, 9 Oct 2013 14:40:09 +0000 (14:40 +0000)]
new factory method for TextData

10 years agomerging delete functionality into trunk
Katja Luther [Wed, 9 Oct 2013 13:33:39 +0000 (13:33 +0000)]
merging delete functionality into trunk

10 years agofixing initialization strategy for description elements
Andreas Kohlbecker [Wed, 9 Oct 2013 12:31:43 +0000 (12:31 +0000)]
fixing initialization strategy for description elements

10 years agohandle pages in FlorML
Andreas Müller [Tue, 8 Oct 2013 14:26:40 +0000 (14:26 +0000)]
handle pages in FlorML

10 years agoincluding all sub areas
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:49 +0000 (14:16 +0000)]
including all sub areas

10 years agoremoving debug code line
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:49 +0000 (14:16 +0000)]
removing debug code line

10 years agomodified area parameter binding for taxon/search REST services
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:48 +0000 (14:16 +0000)]
modified area parameter binding for taxon/search REST services

10 years agoREST end point to page all NamedAreas in use
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:48 +0000 (14:16 +0000)]
REST end point to page all NamedAreas in use

10 years agomethods to list and page all NamedAreas in use
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:47 +0000 (14:16 +0000)]
methods to list and page all NamedAreas in use

10 years agoremoving dead method
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:47 +0000 (14:16 +0000)]
removing dead method

10 years agorenaming web application
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:47 +0000 (14:16 +0000)]
renaming web application

10 years agotypo
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:46 +0000 (14:16 +0000)]
typo

10 years agoTODO comment
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:43 +0000 (14:16 +0000)]
TODO comment

10 years agofix titleCache truncation size issue (e.g. #3774)
Andreas Müller [Mon, 7 Oct 2013 10:13:03 +0000 (10:13 +0000)]
fix titleCache truncation size issue (e.g. #3774)

10 years ago - some refactoring
Patric Plitzner [Mon, 30 Sep 2013 15:13:28 +0000 (15:13 +0000)]
 - some refactoring

10 years ago - added ABCD paths for missing query params
Patric Plitzner [Mon, 30 Sep 2013 14:38:01 +0000 (14:38 +0000)]
 - added ABCD paths for missing query params

10 years ago - fixed NPE in BioCaseQueryGenerator
Patric Plitzner [Mon, 30 Sep 2013 07:49:34 +0000 (07:49 +0000)]
 - fixed NPE in BioCaseQueryGenerator

10 years ago - added javadoc
Patric Plitzner [Mon, 30 Sep 2013 07:29:33 +0000 (07:29 +0000)]
 - added javadoc

10 years agoadd FeatureNodeService test #3757
Andreas Müller [Sat, 28 Sep 2013 01:05:52 +0000 (01:05 +0000)]
add FeatureNodeService test  #3757

10 years agohandle missing featureTree for treeNode #3757
Andreas Müller [Sat, 28 Sep 2013 01:04:56 +0000 (01:04 +0000)]
handle missing featureTree for treeNode  #3757

10 years agoadded TaxonNode order to preferences #3773
Andreas Müller [Fri, 27 Sep 2013 23:31:25 +0000 (23:31 +0000)]
added TaxonNode order to preferences  #3773

10 years agoClean up DescriptionBase (minor)
Andreas Müller [Fri, 27 Sep 2013 23:26:57 +0000 (23:26 +0000)]
Clean up DescriptionBase (minor)

10 years agocorrect handling of null abbrev label in SingleTermUpdater
Andreas Müller [Fri, 27 Sep 2013 22:37:00 +0000 (22:37 +0000)]
correct handling of null abbrev label in SingleTermUpdater

10 years agosome bugfixes for the update script (merge r19034 into trunk)
Andreas Müller [Fri, 27 Sep 2013 17:48:00 +0000 (17:48 +0000)]
some bugfixes for the update script (merge r19034 into trunk)

10 years agoreordering and changing tests for OriginalSOurceType and make second non capital...
Andreas Müller [Fri, 27 Sep 2013 17:39:52 +0000 (17:39 +0000)]
reordering and changing tests for OriginalSOurceType and make second non capital in MeasurementUnit.csv

10 years agominor
Andreas Müller [Fri, 27 Sep 2013 17:38:03 +0000 (17:38 +0000)]
minor

10 years agorestoring old findTaxaAndNames controller methods
Andreas Kohlbecker [Fri, 27 Sep 2013 13:34:19 +0000 (13:34 +0000)]
restoring old findTaxaAndNames controller methods

10 years ago - query parameters are read from wizard page
Patric Plitzner [Fri, 27 Sep 2013 12:45:30 +0000 (12:45 +0000)]
 - query parameters are read from wizard page
 - enhanced query's toString() method

10 years agoadding POST capabilities to rest service endpoint
Andreas Kohlbecker [Fri, 27 Sep 2013 09:26:13 +0000 (09:26 +0000)]
adding POST capabilities to rest service endpoint

10 years agofurher improvement to the TitleAndNameCacheAutoInitializer
Andreas Kohlbecker [Fri, 27 Sep 2013 09:26:10 +0000 (09:26 +0000)]
furher improvement to the TitleAndNameCacheAutoInitializer

10 years agofix missing taxon.titleCache length ->800 in update script
Andreas Müller [Fri, 27 Sep 2013 09:10:01 +0000 (09:10 +0000)]
fix missing taxon.titleCache length ->800 in update script

10 years agominor updates to updater
Andreas Müller [Thu, 26 Sep 2013 16:38:16 +0000 (16:38 +0000)]
minor updates to updater

10 years agopreliminary fix for ICBN bug #3658
Andreas Müller [Thu, 26 Sep 2013 16:37:43 +0000 (16:37 +0000)]
preliminary fix for ICBN bug  #3658

10 years agosome bugfixes for update script
Andreas Müller [Thu, 26 Sep 2013 16:24:12 +0000 (16:24 +0000)]
some bugfixes for update script

10 years agoimproving the TitleCacheAutoInitializer and turning it into a TitleAndNameCacheAutoIn...
Andreas Kohlbecker [Thu, 26 Sep 2013 15:45:49 +0000 (15:45 +0000)]
improving the TitleCacheAutoInitializer and turning it into a TitleAndNameCacheAutoInitializer

10 years agomoving all beaninitializer classes to new package 'eu.etaxonomy.cdm.persistence.dao...
Andreas Kohlbecker [Thu, 26 Sep 2013 15:45:44 +0000 (15:45 +0000)]
moving all beaninitializer classes to new package 'eu.etaxonomy.cdm.persistence.dao.initializer'

10 years agorefactoring MatchMode class
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:08 +0000 (12:50 +0000)]
refactoring MatchMode class

10 years agotodo comment regarding #2432 ([E+M][Portal] Implement search for multiple areas)
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:06 +0000 (12:50 +0000)]
todo comment regarding #2432 ([E+M][Portal] Implement search for multiple areas)

10 years agousing the recomendet requestPathAndQuery() for logging HTTP requests in controllers
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:03 +0000 (12:50 +0000)]
using the recomendet requestPathAndQuery() for logging HTTP requests in controllers

10 years agousing the new search method in the controlers and fixing a bug with missing grouping_...
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:01 +0000 (12:50 +0000)]
using the new search method in the controlers and fixing a bug with missing grouping_by field

10 years ago - fixed BioCASE query XML
Patric Plitzner [Thu, 26 Sep 2013 07:08:02 +0000 (07:08 +0000)]
 - fixed BioCASE query XML

10 years agoreintegrate cdm-3.3 branch into trunk
Andreas Müller [Wed, 25 Sep 2013 13:21:31 +0000 (13:21 +0000)]
reintegrate cdm-3.3 branch into trunk

10 years agominor
Andreas Müller [Wed, 25 Sep 2013 13:14:14 +0000 (13:14 +0000)]
minor

10 years agochange version of parent pom -> 3.3.0
Andreas Müller [Wed, 25 Sep 2013 13:13:25 +0000 (13:13 +0000)]
change version of parent pom -> 3.3.0

10 years agochange version ->3.3.0, move CdmMetaData, change schema version -> 20130924, fix...
Andreas Müller [Wed, 25 Sep 2013 13:12:30 +0000 (13:12 +0000)]
change version ->3.3.0, move CdmMetaData, change schema version -> 20130924, fix TaxonServiceSearch test, update update-script

10 years ago - added hashCode(), equals(), and toString() method to BioCaseQuery
Patric Plitzner [Wed, 25 Sep 2013 11:38:31 +0000 (11:38 +0000)]
 - added hashCode(), equals(), and toString() method to BioCaseQuery

10 years agomerge trunk into cdmlib v3.3 branch
Andreas Müller [Wed, 25 Sep 2013 11:37:12 +0000 (11:37 +0000)]
merge trunk into cdmlib v3.3 branch

10 years agoremove old TermsDataSet
Andreas Müller [Wed, 25 Sep 2013 11:34:05 +0000 (11:34 +0000)]
remove old TermsDataSet

10 years agomerge trunk into cdmlib v3.3 branch
Andreas Müller [Wed, 25 Sep 2013 11:28:14 +0000 (11:28 +0000)]
merge trunk into cdmlib v3.3 branch

10 years agocleaning up
Andreas Kohlbecker [Wed, 25 Sep 2013 11:15:36 +0000 (11:15 +0000)]
cleaning up

10 years agoadding missing type restriction for common names
Andreas Kohlbecker [Wed, 25 Sep 2013 11:14:54 +0000 (11:14 +0000)]
adding missing type restriction for common names

10 years agocomment automated writing of test dataset
Andreas Müller [Wed, 25 Sep 2013 10:44:36 +0000 (10:44 +0000)]
comment automated writing of test dataset

10 years agominor
Andreas Müller [Wed, 25 Sep 2013 10:42:30 +0000 (10:42 +0000)]
minor

10 years agofixing invalid test data
Andreas Kohlbecker [Wed, 25 Sep 2013 09:38:07 +0000 (09:38 +0000)]
fixing invalid test data

10 years agocommenting potential bug, see #3728 (DescriptionListPortalController.getDescriptionE...
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:51 +0000 (09:07 +0000)]
commenting potential bug, see  #3728 (DescriptionListPortalController.getDescriptionElementsForTaxon() seems to be using inapproptiate init strategy)

10 years agodocumentation
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:49 +0000 (09:07 +0000)]
documentation

10 years agocommenting out non working part of test, see #3730 (Taxon.removeTaxonRelation()...
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:46 +0000 (09:07 +0000)]
commenting out non working part of test, see  #3730 (Taxon.removeTaxonRelation() raises error on update)

10 years agoall search tests running successful
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:44 +0000 (09:07 +0000)]
all search tests running successful

10 years agoimplemnting TaxonRelationshipClassBridge to also allow filtering misapplications...
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:40 +0000 (09:07 +0000)]
implemnting TaxonRelationshipClassBridge to also allow filtering misapplications by distribution, but run into a potential java bug which is really weired the solution i found to circumvent it is documented in TaxonServiceImpl.java