Patrick Plitzner [Fri, 16 Aug 2019 08:00:16 +0000 (10:00 +0200)]
ref #8467 add commented code
- un-comment when cloned descriptions can be added to taxon
descriptions as sources
Katja Luther [Fri, 16 Aug 2019 07:01:35 +0000 (09:01 +0200)]
ref #3472: fix set name in source
Katja Luther [Thu, 15 Aug 2019 11:57:04 +0000 (13:57 +0200)]
ref #3472: make setting of name in source configurable
Katja Luther [Thu, 15 Aug 2019 08:41:20 +0000 (10:41 +0200)]
ref #3472: add nameInSource in makeTaxonNodeSynonym
Katja Luther [Thu, 15 Aug 2019 08:34:05 +0000 (10:34 +0200)]
ref #3472: swap Synonym and accTaxon should move all taxon information to the new taxon
Katja Luther [Thu, 15 Aug 2019 08:24:16 +0000 (10:24 +0200)]
add add unitGUID to abcd import
Katja Luther [Thu, 15 Aug 2019 08:22:50 +0000 (10:22 +0200)]
update caches prgress monitor with name
Katja Luther [Thu, 15 Aug 2019 08:20:58 +0000 (10:20 +0200)]
ref #8385: add method to get voc by uuid
Andreas Müller [Wed, 14 Aug 2019 09:04:20 +0000 (11:04 +0200)]
Adapt uniqueness and notNull for some authority parameters
Andreas Müller [Tue, 13 Aug 2019 15:38:55 +0000 (17:38 +0200)]
update model cache for schema version 5.8.1
Andreas Müller [Tue, 13 Aug 2019 14:46:52 +0000 (16:46 +0200)]
ref #7099 preliminary removing initialization of authorities to avoid LIE in AuthenticationPresenterTest
Andreas Müller [Tue, 13 Aug 2019 13:05:21 +0000 (15:05 +0200)]
adapt test H2 to schema v5.8.1
Andreas Müller [Tue, 13 Aug 2019 13:04:49 +0000 (15:04 +0200)]
adapt poms to correct handling of versions => move versions to parent pom
Andreas Müller [Tue, 13 Aug 2019 08:02:19 +0000 (10:02 +0200)]
ref #8454 fix UserAndGroupServiceImplTest
Andreas Müller [Tue, 13 Aug 2019 08:01:22 +0000 (10:01 +0200)]
ref #8442 fix some jaxb annotations
Andreas Müller [Tue, 13 Aug 2019 06:29:31 +0000 (08:29 +0200)]
ref #8442 add externallyManaged to UserDefined classes for matching and merging
Andreas Müller [Tue, 13 Aug 2019 06:28:30 +0000 (08:28 +0200)]
minor
Andreas Müller [Tue, 13 Aug 2019 06:25:40 +0000 (08:25 +0200)]
ref #8442 jaxb for externallyManaged
Andreas Müller [Tue, 13 Aug 2019 06:24:57 +0000 (08:24 +0200)]
ref #8442 , ref #8429 adapt test schemas to model changes
Andreas Müller [Mon, 12 Aug 2019 11:22:50 +0000 (13:22 +0200)]
ref #8442 update script for externally managed, ref #8454 update script for username patterns
Andreas Müller [Mon, 12 Aug 2019 11:21:27 +0000 (13:21 +0200)]
cleanup
Andreas Müller [Mon, 12 Aug 2019 11:20:58 +0000 (13:20 +0200)]
add IRuleConsidered
Andreas Müller [Mon, 12 Aug 2019 11:20:07 +0000 (13:20 +0200)]
ref #8442 add ExternallyManagedImport
Andreas Müller [Mon, 12 Aug 2019 11:18:54 +0000 (13:18 +0200)]
ref #8442 add externallyManaged to DefinedTermBase and TermVocabulary and make ExternallyManaged an embeddable class
Andreas Müller [Mon, 12 Aug 2019 11:16:25 +0000 (13:16 +0200)]
ref #8442 move AuthorityType to model.common
Andreas Müller [Mon, 12 Aug 2019 08:48:26 +0000 (10:48 +0200)]
ref #7099 update script for CdmAuthority tables
Andreas Müller [Mon, 12 Aug 2019 08:46:09 +0000 (10:46 +0200)]
ref #8429 rename DeterminationEvent.setOfReferences to DeterminationEvent.references
Andreas Müller [Mon, 12 Aug 2019 08:44:17 +0000 (10:44 +0200)]
adapt model version number
Andreas Müller [Sat, 10 Aug 2019 11:07:42 +0000 (13:07 +0200)]
ref #7099 fix loading of EnumSet and add tests
Andreas Müller [Fri, 9 Aug 2019 15:52:36 +0000 (17:52 +0200)]
ref #7099 add CdmAuthority to User, remove CDM_VIEW from tests, cleanup
Andreas Müller [Fri, 9 Aug 2019 12:51:12 +0000 (14:51 +0200)]
ref #7099 further updates to CdmAuthority for persistance + add Role class
Andreas Müller [Fri, 9 Aug 2019 11:00:36 +0000 (13:00 +0200)]
ref #7099 rename CdmPermissionClass to PermissionClass
Andreas Müller [Fri, 9 Aug 2019 10:58:53 +0000 (12:58 +0200)]
ref #7099 adapt CdmAuthority class
Andreas Müller [Fri, 9 Aug 2019 10:48:35 +0000 (12:48 +0200)]
ref #7099 rename model.rights to model.permission
Andreas Müller [Fri, 9 Aug 2019 10:45:23 +0000 (12:45 +0200)]
ref #7099 move CRUD and Operation to model
Andreas Müller [Fri, 9 Aug 2019 10:02:26 +0000 (12:02 +0200)]
ref #7099 minor
Andreas Müller [Fri, 9 Aug 2019 09:26:44 +0000 (11:26 +0200)]
ref #7099 move CdmPermissionClass to model
Andreas Müller [Fri, 9 Aug 2019 09:04:16 +0000 (11:04 +0200)]
ref #7099 move user, group and GrantedAuthorityImpl to new rights package
Andreas Müller [Fri, 9 Aug 2019 07:22:21 +0000 (09:22 +0200)]
ref #8454 add regex to User.username and Group.name
Andreas Müller [Thu, 8 Aug 2019 20:06:19 +0000 (22:06 +0200)]
adapt SchemaUpdater_55_58 to new version
Patrick Plitzner [Tue, 13 Aug 2019 07:13:29 +0000 (09:13 +0200)]
ref #7597 Fix deletion of aggregated descriptions
Patrick Plitzner [Tue, 13 Aug 2019 07:12:48 +0000 (09:12 +0200)]
cleanup
Patrick Plitzner [Tue, 13 Aug 2019 07:12:26 +0000 (09:12 +0200)]
ref #7597 Use UUID for service call
Patrick Plitzner [Mon, 12 Aug 2019 16:19:42 +0000 (18:19 +0200)]
ref #7597 Fix concurrent modification exception
Andreas Kohlbecker [Mon, 12 Aug 2019 14:18:02 +0000 (16:18 +0200)]
ref #8437 fixing LIE in DerivedUnitFacadeController
Patrick Plitzner [Mon, 12 Aug 2019 13:43:56 +0000 (15:43 +0200)]
ref #7597 Delete all aggregated descriptions when re-aggregating
Andreas Kohlbecker [Mon, 12 Aug 2019 09:39:20 +0000 (11:39 +0200)]
ref #8437 ITermTreeService termType Feature as filter includes also Character
Katja Luther [Mon, 12 Aug 2019 08:01:32 +0000 (10:01 +0200)]
setters of subtreeConfigurator should be void again, adapt tests
Katja Luther [Fri, 9 Aug 2019 10:29:30 +0000 (12:29 +0200)]
ref #8282: adapt save taxonnode to new doubtful attribute
Andreas Müller [Fri, 9 Aug 2019 10:11:18 +0000 (12:11 +0200)]
cleanup
Andreas Müller [Thu, 8 Aug 2019 20:08:28 +0000 (22:08 +0200)]
minor
Patrick Plitzner [Thu, 8 Aug 2019 13:23:14 +0000 (15:23 +0200)]
ref #7597 Add configuration to data set aggregation
- implement recursive aggregation
Andreas Müller [Thu, 8 Aug 2019 12:24:08 +0000 (14:24 +0200)]
cleanup
Andreas Müller [Thu, 8 Aug 2019 12:22:03 +0000 (14:22 +0200)]
fix #8446 Allow setPublish for subtree to filter for hybrids
Katja Luther [Thu, 8 Aug 2019 12:00:47 +0000 (14:00 +0200)]
ref #8385: add new preference predicates
Andreas Müller [Wed, 7 Aug 2019 13:07:04 +0000 (15:07 +0200)]
fix #7450 try to fix failing test when running in test suite
Andreas Müller [Wed, 7 Aug 2019 11:39:20 +0000 (13:39 +0200)]
fix #7450 allow setPublish for subtree to include misapplied names and pro parte synonyms
Andreas Kohlbecker [Wed, 7 Aug 2019 07:31:40 +0000 (09:31 +0200)]
fixing NPE in DerivedUnitFacadeCacheStrategy.getUnitNumber()
Andreas Müller [Tue, 6 Aug 2019 12:40:20 +0000 (14:40 +0200)]
cleanup
Andreas Müller [Tue, 6 Aug 2019 12:14:33 +0000 (14:14 +0200)]
cleanup and stream API for ForSubtreeConfigurator
Andreas Müller [Tue, 6 Aug 2019 12:13:18 +0000 (14:13 +0200)]
pretty print testSetSecundumForSubtree test data
Andreas Müller [Tue, 6 Aug 2019 10:53:27 +0000 (12:53 +0200)]
ref #7450 implement interfaces and signatures for setPublishForSubtree for misapplications and ppSyns (not yet implemented)
Andreas Müller [Tue, 6 Aug 2019 10:44:57 +0000 (12:44 +0200)]
minor
Patrick Plitzner [Tue, 6 Aug 2019 10:34:36 +0000 (12:34 +0200)]
ref #7597 Add progress monitor to aggregation service call
Katja Luther [Tue, 6 Aug 2019 09:19:15 +0000 (11:19 +0200)]
ref #8365: fix NPE in abcd tests
Katja Luther [Tue, 6 Aug 2019 08:02:56 +0000 (10:02 +0200)]
use configurator for setPublish flag
Andreas Müller [Mon, 5 Aug 2019 14:19:48 +0000 (16:19 +0200)]
ref #7450 revert the incorrect c&p from last commit
Andreas Müller [Mon, 5 Aug 2019 14:10:49 +0000 (16:10 +0200)]
ref #7450 use PublishForSubtreeConfigurator in TaxonNodeService
Andreas Müller [Mon, 5 Aug 2019 14:08:00 +0000 (16:08 +0200)]
cleanup
Andreas Müller [Fri, 2 Aug 2019 18:21:14 +0000 (20:21 +0200)]
ref #8429 add SchemaUpdater_58_581 and implement update script for setOfReferences renaming
Andreas Müller [Fri, 2 Aug 2019 18:20:22 +0000 (20:20 +0200)]
minor
Katja Luther [Mon, 5 Aug 2019 07:59:09 +0000 (09:59 +0200)]
Revert "minor - fix merge conflict"
This reverts commit
fc3932ac4dd186b6f5809863356912f949ae202d.
Katja Luther [Mon, 5 Aug 2019 07:51:30 +0000 (09:51 +0200)]
minor - fix merge conflict
Andreas Kohlbecker [Fri, 2 Aug 2019 15:47:24 +0000 (17:47 +0200)]
ref #8365 adding combination of collection code and unit number as specimenLabel to DerivedUnitFacade
Andreas Müller [Fri, 2 Aug 2019 14:42:18 +0000 (16:42 +0200)]
ref #8422 dependency handling finalized in PolytomousKeyGenerator
Andreas Müller [Thu, 1 Aug 2019 21:09:11 +0000 (23:09 +0200)]
minor
Andreas Müller [Thu, 1 Aug 2019 21:06:24 +0000 (23:06 +0200)]
ref #8422 add dependencies to PolytomousKeyGenerator
Andreas Müller [Thu, 1 Aug 2019 21:04:17 +0000 (23:04 +0200)]
ref #8422 fix reuse of feature if it shouldn't
Katja Luther [Fri, 2 Aug 2019 09:47:09 +0000 (11:47 +0200)]
ref #8385: fix TermOrder Enum
Andreas Kohlbecker [Fri, 2 Aug 2019 09:18:01 +0000 (11:18 +0200)]
fix #8436 termTree/* services with termType filter and featureTree/* services restricted to feature trees only
Andreas Kohlbecker [Fri, 2 Aug 2019 09:15:39 +0000 (11:15 +0200)]
ref #8437 using the listByRestriction method in favour of a new untested dao method & implementing page method in ITermTreeService
Andreas Müller [Thu, 1 Aug 2019 19:48:39 +0000 (21:48 +0200)]
ref #8422 fix leaf handling and simplify and complete tests
Andreas Müller [Thu, 1 Aug 2019 16:58:41 +0000 (18:58 +0200)]
ref #8422 handle single value branches better
Andreas Müller [Thu, 1 Aug 2019 13:58:29 +0000 (15:58 +0200)]
cleanup
Andreas Müller [Thu, 1 Aug 2019 13:57:41 +0000 (15:57 +0200)]
ref #8422 change sort order for multi-taxon or multi-state branches
Andreas Kohlbecker [Thu, 1 Aug 2019 16:01:01 +0000 (18:01 +0200)]
ref #8434 removing deprecated featureNode/* web service mapping as this was never used since one year
Andreas Müller [Thu, 1 Aug 2019 13:00:03 +0000 (15:00 +0200)]
ref #8422 some fixes for merging in PolytomousKeyGenerator
Andreas Müller [Thu, 1 Aug 2019 12:58:23 +0000 (14:58 +0200)]
ref #8437 first implementation for listBy termType for TermTreeService, not yet tested
Andreas Müller [Thu, 1 Aug 2019 12:55:30 +0000 (14:55 +0200)]
minor
Andreas Müller [Thu, 1 Aug 2019 12:53:35 +0000 (14:53 +0200)]
minor toString changes
Andreas Müller [Thu, 1 Aug 2019 09:14:15 +0000 (11:14 +0200)]
ref #8422 adding test for merge mode
Andreas Müller [Thu, 1 Aug 2019 09:13:27 +0000 (11:13 +0200)]
minor
Andreas Müller [Thu, 1 Aug 2019 07:33:38 +0000 (09:33 +0200)]
rename dependencies
Patrick Plitzner [Thu, 1 Aug 2019 10:17:06 +0000 (12:17 +0200)]
ref #7597 Adapt to service changes and rename long running method
Katja Luther [Thu, 1 Aug 2019 10:07:07 +0000 (12:07 +0200)]
fix typo
Katja Luther [Thu, 1 Aug 2019 09:58:09 +0000 (11:58 +0200)]
ref #8435: differ between info and debug level
Katja Luther [Wed, 31 Jul 2019 13:36:57 +0000 (15:36 +0200)]
ref #8431: adaptions to show the export name in progress monitor
Patrick Plitzner [Thu, 1 Aug 2019 08:01:18 +0000 (10:01 +0200)]
ref #7597 Aggregation for each taxon based on associated specimens
Andreas Müller [Thu, 1 Aug 2019 07:03:16 +0000 (09:03 +0200)]
minor
Andreas Müller [Thu, 1 Aug 2019 07:03:05 +0000 (09:03 +0200)]
ref #8422 fix scoring for categoricalData