jenkins [Thu, 15 Apr 2021 14:08:52 +0000 (16:08 +0200)]
updating poms for 5.23.0-SNAPSHOT development
Andreas Müller [Wed, 14 Apr 2021 16:57:22 +0000 (18:57 +0200)]
cleanup
Andreas Müller [Wed, 14 Apr 2021 16:57:09 +0000 (18:57 +0200)]
ref #9578 , ref #8889 fix duplicate handling in getTaxonDistributionDTO
Andreas Müller [Wed, 14 Apr 2021 16:17:46 +0000 (18:17 +0200)]
cleanup
Andreas Müller [Wed, 14 Apr 2021 16:17:21 +0000 (18:17 +0200)]
ref #9578 , ref #8889 add parentNode in getTaxonDistributionDTO() instead and handle openChildren correctly there
Andreas Müller [Wed, 14 Apr 2021 15:43:29 +0000 (17:43 +0200)]
handle UTF8 correctly in HGTaxonComparatorTest
Andreas Müller [Wed, 14 Apr 2021 15:40:26 +0000 (17:40 +0200)]
ref #9578 , ref #8889 switch on sorting for recursive=false in TaxonNodeServiceImpl.loadChildNodesOfTaxonNode()
Andreas Müller [Wed, 14 Apr 2021 15:37:54 +0000 (17:37 +0200)]
cleanup
Andreas Müller [Wed, 14 Apr 2021 15:35:57 +0000 (17:35 +0200)]
ref #9578 , ref #8889 fix behavior of TaxonNodeDaoHibernateImpl.listChildrenOf() with recursive=true and comparator
* current implementation also returns the parent which is semantically not correct and differs from implementation without comparator
Andreas Kohlbecker [Wed, 14 Apr 2021 15:04:21 +0000 (17:04 +0200)]
ref #9556 avoiding collection of full derivatives tree in DTOs - using maxdepth parameter
Andreas Kohlbecker [Wed, 14 Apr 2021 11:28:33 +0000 (13:28 +0200)]
ref #9556 avoiding collection of full derivatives tree in DTOs - bugfix
Katja Luther [Wed, 14 Apr 2021 07:51:43 +0000 (09:51 +0200)]
ref #9578: avoid duplicates for parent and child selection
Andreas Kohlbecker [Tue, 13 Apr 2021 14:11:23 +0000 (16:11 +0200)]
ref #9332 adapting init strategy to renamed field source -> designationSource
Andreas Kohlbecker [Tue, 13 Apr 2021 11:53:42 +0000 (13:53 +0200)]
ref #9556 avoiding collection of full derivatives tree in DTOs
Katja Luther [Tue, 13 Apr 2021 11:27:14 +0000 (13:27 +0200)]
ref #8233: add pref stable identifier to cloneTypedesignation method
Katja Luther [Mon, 12 Apr 2021 07:49:36 +0000 (09:49 +0200)]
fix ClassNotFoundException
Andreas Müller [Fri, 2 Apr 2021 18:19:48 +0000 (20:19 +0200)]
ref #9541 improve label for taxon nodes in ReferencingObjectFormatter
Andreas Müller [Fri, 2 Apr 2021 16:21:25 +0000 (18:21 +0200)]
ref #9541 fix potential NPE in distributionDto loading
Andreas Müller [Fri, 2 Apr 2021 16:20:47 +0000 (18:20 +0200)]
cleanup
Andreas Müller [Thu, 1 Apr 2021 23:42:12 +0000 (01:42 +0200)]
ref #9541 q&d add target description for untargeted sources
Andreas Müller [Thu, 1 Apr 2021 23:18:20 +0000 (01:18 +0200)]
cleanup
Andreas Müller [Thu, 1 Apr 2021 23:18:07 +0000 (01:18 +0200)]
fix #9578 remove duplicates from distributionDto service (complete test)
Andreas Müller [Thu, 1 Apr 2021 23:08:06 +0000 (01:08 +0200)]
fix #9578 remove duplicates from distributionDto service
Andreas Müller [Thu, 1 Apr 2021 22:58:16 +0000 (00:58 +0200)]
cleanup
Andreas Müller [Thu, 1 Apr 2021 22:08:35 +0000 (00:08 +0200)]
ref #9541 add getBestOpenInTargetType to ReferencingObjectDto
Andreas Müller [Thu, 1 Apr 2021 01:06:48 +0000 (03:06 +0200)]
ref #9541 fix query on IdentifiableSource and SingleSource
Andreas Müller [Wed, 31 Mar 2021 23:55:13 +0000 (01:55 +0200)]
ref #9541 Source for => for
Andreas Müller [Wed, 31 Mar 2021 22:46:11 +0000 (00:46 +0200)]
ref #9541 further improve referencing object handling
Andreas Müller [Wed, 31 Mar 2021 20:35:20 +0000 (22:35 +0200)]
ref #9541 deproxy target entity and referencing entity
Andreas Müller [Wed, 31 Mar 2021 19:58:54 +0000 (21:58 +0200)]
ref #9541 DTOs for referencing objects and server side initialization
Andreas Müller [Wed, 31 Mar 2021 19:28:22 +0000 (21:28 +0200)]
ref #9541 move distance formatting to own formatting class
Andreas Müller [Wed, 31 Mar 2021 16:55:22 +0000 (18:55 +0200)]
cleanup
Katja Luther [Wed, 31 Mar 2021 16:49:45 +0000 (18:49 +0200)]
ref #9537: fix select for characterDto -continue
Katja Luther [Wed, 31 Mar 2021 16:25:31 +0000 (18:25 +0200)]
ref #9537: fix select for characterDto
Katja Luther [Wed, 31 Mar 2021 16:20:56 +0000 (18:20 +0200)]
ref #9537: adapt CharacterDto to ratioTo - avoid NPE
Katja Luther [Wed, 31 Mar 2021 16:19:21 +0000 (18:19 +0200)]
ref #9537: adapt CharacterDto to ratioTo
Katja Luther [Wed, 31 Mar 2021 10:14:05 +0000 (12:14 +0200)]
ref #9574: add html tags to nameTypeDesignation string
Katja Luther [Wed, 31 Mar 2021 08:37:11 +0000 (10:37 +0200)]
ref #9515: remove second call setIndividualsAssociationDescriptionPerTaxon
Katja Luther [Wed, 31 Mar 2021 08:28:02 +0000 (10:28 +0200)]
ref #9531: adapt error message for original spelling
Andreas Müller [Tue, 30 Mar 2021 21:54:19 +0000 (23:54 +0200)]
fix #9571 some more documentation
Andreas Müller [Tue, 30 Mar 2021 21:47:58 +0000 (23:47 +0200)]
fix #9571 fix tests in persistence and service
Andreas Müller [Tue, 30 Mar 2021 21:39:12 +0000 (23:39 +0200)]
fix tests for now more specific cache strategy
Andreas Müller [Tue, 30 Mar 2021 21:38:50 +0000 (23:38 +0200)]
cleanup
Andreas Müller [Tue, 30 Mar 2021 21:38:30 +0000 (23:38 +0200)]
fix #9571 also allow new formatting for databases and maps
Andreas Müller [Tue, 30 Mar 2021 21:01:35 +0000 (23:01 +0200)]
rename ref=>sec
Andreas Müller [Tue, 30 Mar 2021 21:00:45 +0000 (23:00 +0200)]
add short specific test
Andreas Müller [Tue, 30 Mar 2021 21:00:23 +0000 (23:00 +0200)]
fix #9571 improve sec-formatting for taxa with webpage secundum
Andreas Müller [Tue, 30 Mar 2021 20:58:41 +0000 (22:58 +0200)]
cleanup
Andreas Müller [Tue, 30 Mar 2021 19:25:15 +0000 (21:25 +0200)]
fix #9570 cleanup
Andreas Müller [Tue, 30 Mar 2021 19:21:51 +0000 (21:21 +0200)]
fix #9570 use name cache strategy for tagged text creation
Andreas Müller [Tue, 30 Mar 2021 19:02:23 +0000 (21:02 +0200)]
fix #9570 fix tagged text for NameTypeDesignation
Andreas Müller [Tue, 30 Mar 2021 18:58:47 +0000 (20:58 +0200)]
cleanup
Andreas Müller [Tue, 30 Mar 2021 17:40:42 +0000 (19:40 +0200)]
ref #9567 adapt javadoc
Andreas Müller [Tue, 30 Mar 2021 10:29:25 +0000 (12:29 +0200)]
ref #9567 slightly adapt the last fix
Andreas Müller [Tue, 30 Mar 2021 10:23:34 +0000 (12:23 +0200)]
fix #9567 fix missing defined order if names differ only in hybrid sign
Andreas Müller [Tue, 30 Mar 2021 10:13:31 +0000 (12:13 +0200)]
ref #9567 fix potential NPE in TaxonComparator if used in HomotypicGroupNameComparator
Katja Luther [Tue, 30 Mar 2021 06:37:06 +0000 (08:37 +0200)]
ref #9567: fix handleSameBasionym comparison
Andreas Müller [Mon, 29 Mar 2021 18:46:51 +0000 (20:46 +0200)]
fix #9567 unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
Andreas Müller [Mon, 29 Mar 2021 18:44:30 +0000 (20:44 +0200)]
cleanup
Andreas Müller [Mon, 29 Mar 2021 17:44:31 +0000 (19:44 +0200)]
ref #9566 use nomenclatural standing also for name ordering with HomotypicalGroupNameComparator
Andreas Müller [Mon, 29 Mar 2021 17:43:22 +0000 (19:43 +0200)]
ref #9566 use invalid designation symbol for all names with nomenclatural standing "invalid"
Andreas Müller [Mon, 29 Mar 2021 17:30:00 +0000 (19:30 +0200)]
ref #9566 use nomenclatural standing for taxon ordering
Andreas Müller [Mon, 29 Mar 2021 17:25:11 +0000 (19:25 +0200)]
cleanup
Andreas Müller [Mon, 29 Mar 2021 16:42:32 +0000 (18:42 +0200)]
fix #9561 make protectedTitleCache search a search with MatchMode.Beginning OR Anywhere
Andreas Müller [Mon, 29 Mar 2021 16:31:21 +0000 (18:31 +0200)]
cleanup
Andreas Kohlbecker [Mon, 29 Mar 2021 09:53:05 +0000 (11:53 +0200)]
ref #9555 IEnumTerms with uuid in json
Katja Luther [Mon, 29 Mar 2021 08:45:56 +0000 (10:45 +0200)]
ref #9556: remove derivates from fieldUnitDto in loadFieldUnitDto
Katja Luther [Mon, 29 Mar 2021 08:16:24 +0000 (10:16 +0200)]
adapt symbol for misspellings
Katja Luther [Mon, 29 Mar 2021 05:35:44 +0000 (07:35 +0200)]
adapt NomenclaturalStatus String in CdmLight
Andreas Kohlbecker [Fri, 26 Mar 2021 15:52:43 +0000 (16:52 +0100)]
ref #9563 TODO comment
Andreas Kohlbecker [Fri, 26 Mar 2021 14:55:14 +0000 (15:55 +0100)]
ref #9556 DerivedUnitFacadeController.doGetFieldObjectMediaDTO() is no longer using loadFieldUnitDTO
Andreas Müller [Fri, 26 Mar 2021 11:25:32 +0000 (12:25 +0100)]
fix incorrect load method
Andreas Müller [Fri, 26 Mar 2021 11:07:15 +0000 (12:07 +0100)]
fix #9561 fix search searches on titleCache also if titleCache is protected
Andreas Kohlbecker [Fri, 26 Mar 2021 10:55:57 +0000 (11:55 +0100)]
unsind session load instead of session refresh
Andreas Kohlbecker [Fri, 26 Mar 2021 10:52:03 +0000 (11:52 +0100)]
ref #9557 removing obsolete findFieldUnitDTO methods
Andreas Kohlbecker [Fri, 26 Mar 2021 10:50:23 +0000 (11:50 +0100)]
ref #9557 findRootUnitDTOs service and controller method
Andreas Kohlbecker [Fri, 26 Mar 2021 10:18:26 +0000 (11:18 +0100)]
ref #9557 renaming method to correct plural form
Andreas Müller [Fri, 26 Mar 2021 09:15:34 +0000 (10:15 +0100)]
unignore not-failing test
Andreas Müller [Fri, 26 Mar 2021 09:15:15 +0000 (10:15 +0100)]
cleanup
Andreas Müller [Fri, 26 Mar 2021 08:56:00 +0000 (09:56 +0100)]
cleanup
Andreas Müller [Fri, 26 Mar 2021 08:12:21 +0000 (09:12 +0100)]
ref #9558 adapt test data after full sample import test to run in suite
Andreas Müller [Thu, 25 Mar 2021 22:33:01 +0000 (23:33 +0100)]
ref #9558 exception, error and warning test and full data sample test for cdmlight
Andreas Müller [Thu, 25 Mar 2021 22:27:04 +0000 (23:27 +0100)]
add hermaphrodite to test terms
Andreas Müller [Thu, 25 Mar 2021 22:06:41 +0000 (23:06 +0100)]
add hostplant to test terms
Andreas Müller [Thu, 25 Mar 2021 12:04:21 +0000 (13:04 +0100)]
ref #9550 fixing title in test
Andreas Müller [Thu, 25 Mar 2021 11:39:52 +0000 (12:39 +0100)]
ref #9550 add PLoS ONE to the explicit journal title list
Andreas Müller [Thu, 25 Mar 2021 09:46:32 +0000 (10:46 +0100)]
cleanup
Andreas Müller [Thu, 25 Mar 2021 09:46:02 +0000 (10:46 +0100)]
implement user friendly class name without camel case
Andreas Kohlbecker [Wed, 24 Mar 2021 16:47:15 +0000 (17:47 +0100)]
adding NamedSource.citation to json configuration
Andreas Müller [Wed, 24 Mar 2021 16:45:44 +0000 (17:45 +0100)]
cleanup
Andreas Müller [Wed, 24 Mar 2021 16:44:59 +0000 (17:44 +0100)]
cleanup
Andreas Müller [Wed, 24 Mar 2021 15:44:35 +0000 (16:44 +0100)]
cleanup
Andreas Müller [Wed, 24 Mar 2021 15:34:30 +0000 (16:34 +0100)]
fix #9551 and #9550 seriesPart parsing for articles (and books?) and special titles like PhytoKeys
Andreas Kohlbecker [Wed, 24 Mar 2021 13:45:21 +0000 (14:45 +0100)]
ref #9332 adapting DTO to property change source -> designationSource
Andreas Kohlbecker [Wed, 24 Mar 2021 13:44:38 +0000 (14:44 +0100)]
ref #9332 adapting further init strategies
Andreas Müller [Wed, 24 Mar 2021 13:20:00 +0000 (14:20 +0100)]
fix #9550 , ref #9014 include PhytoKeys in name parser
Andreas Müller [Tue, 23 Mar 2021 12:34:08 +0000 (13:34 +0100)]
cleanup
Andreas Kohlbecker [Wed, 24 Mar 2021 10:22:04 +0000 (11:22 +0100)]
ref #9332 adapting initstrategy
Andreas Kohlbecker [Wed, 24 Mar 2021 09:45:19 +0000 (10:45 +0100)]
ref #6866 fixing bug in DeterminationEventDTO
Andreas Kohlbecker [Tue, 23 Mar 2021 16:37:12 +0000 (17:37 +0100)]
ref #6866 SpecimenOrObservationBaseDTO with DeterminationEventDTOs