cdmlib.git
11 years agoreverting erroneously commits r16027 to r16031
Andreas Kohlbecker [Wed, 19 Sep 2012 07:52:39 +0000 (07:52 +0000)]
reverting erroneously commits r16027 to r16031

11 years agoinitial working version of ikeyplus import
Andreas Kohlbecker [Tue, 18 Sep 2012 21:16:20 +0000 (21:16 +0000)]
initial working version of ikeyplus import

11 years agoinitial multisearcher implementation (allows union like search on muliple indexes)
Andreas Kohlbecker [Tue, 18 Sep 2012 21:16:00 +0000 (21:16 +0000)]
initial multisearcher implementation (allows union like search on muliple indexes)

11 years agotest for TaxonService.findByFullText() successful
Andreas Kohlbecker [Tue, 18 Sep 2012 21:15:54 +0000 (21:15 +0000)]
test for TaxonService.findByFullText() successful

11 years agoa bit more cleaning up
Andreas Kohlbecker [Tue, 18 Sep 2012 21:15:44 +0000 (21:15 +0000)]
a bit more cleaning up

11 years agointroducing the QueryFactory for to modularize lucene query building
Andreas Kohlbecker [Tue, 18 Sep 2012 21:15:38 +0000 (21:15 +0000)]
introducing the QueryFactory for to modularize lucene query building

11 years agomake BMTransformer not public
Andreas Müller [Mon, 17 Sep 2012 08:52:14 +0000 (08:52 +0000)]
make BMTransformer not public

11 years agoupdate logging for inInReferences in BM import
Andreas Müller [Mon, 17 Sep 2012 08:49:13 +0000 (08:49 +0000)]
update logging for inInReferences in BM import

11 years agoupdate for Campanula import
Andreas Müller [Thu, 13 Sep 2012 15:00:30 +0000 (15:00 +0000)]
update for Campanula import

11 years agoimplementing GrantedAuthorityService for #2990 (implement missing parts of Groups...
Andreas Kohlbecker [Thu, 13 Sep 2012 10:28:15 +0000 (10:28 +0000)]
implementing GrantedAuthorityService for #2990 (implement missing parts of Groups admin details view)

11 years agobugfix for finding eol agents converter
Andreas Müller [Wed, 12 Sep 2012 11:43:18 +0000 (11:43 +0000)]
bugfix for finding eol agents converter

11 years agoupdating generics and bugfix for finding eol agents converter
Andreas Müller [Wed, 12 Sep 2012 11:34:04 +0000 (11:34 +0000)]
updating generics and bugfix for finding eol agents converter

11 years agoadd EOL_Agent converter
Andreas Müller [Wed, 12 Sep 2012 10:40:14 +0000 (10:40 +0000)]
add EOL_Agent converter

11 years agoadd EOL_Agent converter
Andreas Müller [Wed, 12 Sep 2012 10:39:54 +0000 (10:39 +0000)]
add EOL_Agent converter

11 years agoSome bugfixes for the DwcA import
Andreas Müller [Wed, 12 Sep 2012 09:23:44 +0000 (09:23 +0000)]
Some bugfixes for the DwcA import

11 years agobugfix for failing dwca description import
Andreas Müller [Tue, 11 Sep 2012 22:32:43 +0000 (22:32 +0000)]
bugfix for failing dwca description import

11 years agopreparations for secutity implementation in taxeditor ApplicationController
Andreas Kohlbecker [Tue, 11 Sep 2012 16:57:39 +0000 (16:57 +0000)]
preparations for secutity implementation in taxeditor ApplicationController

11 years agominor
Andreas Müller [Tue, 11 Sep 2012 13:41:09 +0000 (13:41 +0000)]
minor

11 years agoleave empty descriptions
Andreas Müller [Tue, 11 Sep 2012 13:40:41 +0000 (13:40 +0000)]
leave empty descriptions

11 years agodescription transformer for emonocots
Andreas Müller [Tue, 11 Sep 2012 13:37:00 +0000 (13:37 +0000)]
description transformer for emonocots

11 years agoremove uncompiling bug, still incorrect
Andreas Müller [Tue, 11 Sep 2012 13:14:16 +0000 (13:14 +0000)]
remove uncompiling bug, still incorrect

11 years agoadd dwca import transformer for features
Andreas Müller [Tue, 11 Sep 2012 13:13:15 +0000 (13:13 +0000)]
add dwca import transformer for features

11 years agoimplement description in DwcA
Andreas Müller [Tue, 11 Sep 2012 13:11:55 +0000 (13:11 +0000)]
implement description in DwcA

11 years agogetFeature in Dwca import public
Andreas Müller [Tue, 11 Sep 2012 12:55:59 +0000 (12:55 +0000)]
getFeature in Dwca import public

11 years agoimplement getFeature for DwCA import
Andreas Müller [Tue, 11 Sep 2012 12:54:12 +0000 (12:54 +0000)]
implement getFeature for DwCA import

11 years agofixing #3094 (security: make PermissionEvaluator and/or methods available via Applica...
Andreas Kohlbecker [Tue, 11 Sep 2012 11:14:06 +0000 (11:14 +0000)]
fixing #3094 (security: make PermissionEvaluator and/or methods available via ApplicationController) & also removing hasPermission() from IService

11 years agominor
Andreas Müller [Tue, 11 Sep 2012 08:39:43 +0000 (08:39 +0000)]
minor

11 years agobetter reporting for missing field entry in DwcAin
Andreas Müller [Tue, 11 Sep 2012 08:37:48 +0000 (08:37 +0000)]
better reporting for missing field entry in DwcAin

11 years agoadd exception for file is missing
Andreas Müller [Tue, 11 Sep 2012 08:36:55 +0000 (08:36 +0000)]
add exception for file is missing

11 years agocleaning up spring context configuration
Andreas Kohlbecker [Tue, 11 Sep 2012 07:50:34 +0000 (07:50 +0000)]
cleaning up spring context configuration

11 years agoadd modifier handling to imports
Andreas Müller [Mon, 10 Sep 2012 20:04:54 +0000 (20:04 +0000)]
add modifier handling to imports

11 years agoadd statistical measure handling to imports
Andreas Müller [Mon, 10 Sep 2012 19:33:59 +0000 (19:33 +0000)]
add statistical measure handling to imports

11 years agonew Factory Method for StatisticalMeasurement
Andreas Müller [Mon, 10 Sep 2012 18:41:25 +0000 (18:41 +0000)]
new Factory Method for StatisticalMeasurement

11 years agoadd measurement unit handling to imports
Andreas Müller [Mon, 10 Sep 2012 17:49:20 +0000 (17:49 +0000)]
add measurement unit handling to imports

11 years agofixing #3079 (security: implement DELETE in CdmSecurityHibernateInterceptor)
Andreas Kohlbecker [Mon, 10 Sep 2012 13:11:01 +0000 (13:11 +0000)]
fixing #3079 (security: implement DELETE in CdmSecurityHibernateInterceptor)

11 years agosplitting up long test methods
Andreas Kohlbecker [Mon, 10 Sep 2012 12:31:15 +0000 (12:31 +0000)]
splitting up long test methods

11 years agofixing bug in isModified() - had inverted logic
Andreas Kohlbecker [Mon, 10 Sep 2012 12:31:11 +0000 (12:31 +0000)]
fixing bug in isModified() - had inverted logic

11 years agoremoving old comment
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:44 +0000 (06:15 +0000)]
removing old comment

11 years agofixing class cast exception in test
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:42 +0000 (06:15 +0000)]
fixing class cast exception in test

11 years agofixing testing context in persitence and fixing test
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:40 +0000 (06:15 +0000)]
fixing testing context in persitence and fixing test

11 years agoStraightening Operations.class, new enum CRUD and deprecating hasPermission in IService
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:32 +0000 (06:15 +0000)]
Straightening Operations.class, new enum CRUD and deprecating hasPermission in IService

11 years agousing EnumSets for Operation
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:27 +0000 (06:15 +0000)]
using EnumSets for Operation

11 years agorenaming classes and fields - missing bits
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:24 +0000 (06:15 +0000)]
renaming classes and fields - missing bits

11 years agorenaming classes and fields a bit
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:21 +0000 (06:15 +0000)]
renaming classes and fields a bit

11 years agolast bugfix, now all test are successful
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:15 +0000 (06:15 +0000)]
last bugfix, now all test are successful

11 years agoDescriptionElement and Description permissions implemented
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:11 +0000 (06:15 +0000)]
DescriptionElement and Description permissions implemented

11 years agoDescriptionElement and Description permissions implemented
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:08 +0000 (06:15 +0000)]
DescriptionElement and Description permissions implemented

11 years agoDescriptionVoter implemented + authority syntax improvement + better parsing of autho...
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:03 +0000 (06:15 +0000)]
DescriptionVoter implemented + authority syntax improvement + better parsing of authority Strings (some tests failing)

11 years agoremoving implicitPermission and voters and some cleanup
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:57 +0000 (06:14 +0000)]
removing implicitPermission and voters and some cleanup

11 years agoall test SUCCESSFUL - (concept of implicitPermission and voters discarded and disabled)
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:54 +0000 (06:14 +0000)]
all test SUCCESSFUL - (concept of implicitPermission and voters discarded and disabled)

11 years agoremoving obsolete class
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:48 +0000 (06:14 +0000)]
removing obsolete class

11 years agoAccessDecisionVoter based acl implementation working - all test succeed, but assertio...
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:44 +0000 (06:14 +0000)]
AccessDecisionVoter based acl implementation working - all test succeed, but assertions in test missing

11 years agointroducing CdmPermissionVoters
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:38 +0000 (06:14 +0000)]
introducing CdmPermissionVoters

11 years agousing String EL for userService.changePasswordForUser() and a little house keeping
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:34 +0000 (06:14 +0000)]
using String EL for userService.changePasswordForUser() and a little house keeping

11 years agomore security testing
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:26 +0000 (06:14 +0000)]
more security testing

11 years agorenaming user in test data
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:21 +0000 (06:14 +0000)]
renaming user in test data

11 years agoonly white space
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:18 +0000 (06:14 +0000)]
only white space

11 years agoAlgaTerra categorical data and flat classifications
Andreas Müller [Sat, 8 Sep 2012 22:18:53 +0000 (22:18 +0000)]
AlgaTerra categorical data and flat classifications

11 years agoreverting last commit - will be committed again later
Andreas Kohlbecker [Sat, 8 Sep 2012 08:00:25 +0000 (08:00 +0000)]
reverting last commit - will be committed again later

11 years agomerging in git branch 'methodSecurityExpressions' and resolving conflict in SecurityT...
Andreas Kohlbecker [Fri, 7 Sep 2012 14:42:02 +0000 (14:42 +0000)]
merging in git branch 'methodSecurityExpressions' and resolving conflict in SecurityTest.java

11 years agoadd stateData to imports
Andreas Müller [Thu, 6 Sep 2012 13:30:34 +0000 (13:30 +0000)]
add stateData to imports

11 years agominor
Andreas Müller [Thu, 6 Sep 2012 09:58:21 +0000 (09:58 +0000)]
minor

11 years agothrow exception when resultset query is invalid
Andreas Müller [Wed, 5 Sep 2012 19:23:13 +0000 (19:23 +0000)]
throw exception when resultset query is invalid

11 years agoadd getByIso to WaterbodyAndCountry
Andreas Müller [Wed, 5 Sep 2012 19:22:30 +0000 (19:22 +0000)]
add getByIso to WaterbodyAndCountry

11 years agobugfix for factory method in TimePeriod constructor for Date
Andreas Müller [Wed, 5 Sep 2012 19:21:59 +0000 (19:21 +0000)]
bugfix for factory method in TimePeriod constructor for Date

11 years agonullSafeInt
Andreas Müller [Wed, 5 Sep 2012 18:52:40 +0000 (18:52 +0000)]
nullSafeInt

11 years agoadd factory method to TimePeriod for Date
Andreas Müller [Wed, 5 Sep 2012 17:07:32 +0000 (17:07 +0000)]
add factory method to TimePeriod for Date

11 years agoinoring failing test again
Andreas Kohlbecker [Wed, 5 Sep 2012 08:51:05 +0000 (08:51 +0000)]
inoring failing test again

11 years agominor logging
Andreas Müller [Tue, 4 Sep 2012 20:10:11 +0000 (20:10 +0000)]
minor logging

11 years agoBMImportConfig constructor from private to protected #3701
Andreas Müller [Tue, 4 Sep 2012 20:09:00 +0000 (20:09 +0000)]
BMImportConfig constructor from private to protected #3701

11 years agoadding logging output to some ACL related classes
Andreas Kohlbecker [Mon, 3 Sep 2012 09:02:59 +0000 (09:02 +0000)]
adding logging output to some ACL related classes

11 years agoextracting method CdmBase.instanceToString() from CdmBase.toString()
Andreas Kohlbecker [Mon, 3 Sep 2012 09:02:53 +0000 (09:02 +0000)]
extracting method CdmBase.instanceToString() from CdmBase.toString()

11 years agomaking securitiy test more meaningful => test result is not as expected => ignoring...
Andreas Kohlbecker [Fri, 31 Aug 2012 16:13:37 +0000 (16:13 +0000)]
making securitiy test more meaningful => test result is not as expected => ignoring test

11 years agoadding comments regarding permissions and authorities
Andreas Kohlbecker [Fri, 31 Aug 2012 16:13:33 +0000 (16:13 +0000)]
adding comments regarding permissions and authorities

11 years agoUpdated to remove calls to getRelatedFrom / getRelatedTo .
Cherian Mathew [Fri, 31 Aug 2012 12:03:48 +0000 (12:03 +0000)]
Updated to remove calls to getRelatedFrom / getRelatedTo .
Other indirect, transient methods in NameRelationship, TaxonRelationship and SynonymRelationship have been used.

11 years agoGetRelatedTo/From now changed back to being protected.
Cherian Mathew [Fri, 31 Aug 2012 11:57:14 +0000 (11:57 +0000)]
GetRelatedTo/From now changed back to being protected.

11 years agoconflict resolved
Andreas Kohlbecker [Thu, 30 Aug 2012 12:42:28 +0000 (12:42 +0000)]
conflict resolved

11 years agoNameCatalogueController : corrected apt transformation to html.
Cherian Mathew [Thu, 30 Aug 2012 07:43:57 +0000 (07:43 +0000)]
NameCatalogueController : corrected apt transformation to html.
HtmlView : added possibility for the input map to contain a complete html page

11 years agoadded hard coded examples to each documentation page
Cherian Mathew [Thu, 30 Aug 2012 07:42:27 +0000 (07:42 +0000)]
added hard coded examples to each documentation page

11 years agoremoving @Override from interface implementations
Andreas Kohlbecker [Wed, 29 Aug 2012 11:49:36 +0000 (11:49 +0000)]
removing @Override from interface implementations

11 years agofixing #3058 (hibernate search: not all description elements found) by padding all...
Andreas Kohlbecker [Wed, 29 Aug 2012 10:47:02 +0000 (10:47 +0000)]
fixing #3058 (hibernate search: not all description elements found) by padding all id fields in lucene

11 years ago- removed /{datasource} from web service urls, since they are not required anymore
Cherian Mathew [Fri, 24 Aug 2012 15:18:03 +0000 (15:18 +0000)]
- removed /{datasource} from web service urls, since they are not required anymore
- updated name_catalogue documentation with Andreas' comments

11 years agomade 'getRelatedFrom()' and 'getRelatedTo()' for use in NameCatalogueController
Cherian Mathew [Tue, 21 Aug 2012 11:40:50 +0000 (11:40 +0000)]
made 'getRelatedFrom()' and 'getRelatedTo()' for use in NameCatalogueController

11 years agoadded name and rank in taxon web service response
Cherian Mathew [Tue, 21 Aug 2012 11:39:35 +0000 (11:39 +0000)]
added name and rank in taxon web service response

12 years agofix #3046, order for taxa with 1 taxon having a nom.status.
Andreas Müller [Fri, 10 Aug 2012 16:03:49 +0000 (16:03 +0000)]
fix #3046, order for taxa with 1 taxon having a nom.status.

12 years agofix #3046, order for taxa with 1 taxon having a nom.status.
Andreas Müller [Fri, 10 Aug 2012 12:17:16 +0000 (12:17 +0000)]
fix #3046, order for taxa with 1 taxon having a nom.status.

12 years agofix NPE for NomStatus which has no type in TaxonComparator
Andreas Müller [Thu, 9 Aug 2012 13:22:11 +0000 (13:22 +0000)]
fix NPE for NomStatus which has no type in TaxonComparator

12 years agoreading apt file using input stream instead of file as this works also within jars
Cherian Mathew [Wed, 8 Aug 2012 08:28:18 +0000 (08:28 +0000)]
reading apt file using input stream instead of file as this works also within jars

12 years agoadded apt conversion method for input stream
Cherian Mathew [Wed, 8 Aug 2012 08:27:39 +0000 (08:27 +0000)]
added apt conversion method for input stream

12 years agocorrected copy resources task. now using copy-resources goal which does not interfere...
Cherian Mathew [Wed, 8 Aug 2012 08:25:51 +0000 (08:25 +0000)]
corrected copy resources task. now using copy-resources goal which does not interfere with the default resource copy.

12 years agoremove 001_cdm.hsqldb.ddl in io layer as we do use H2 for tests now. Keeping both...
Andreas Müller [Tue, 7 Aug 2012 14:18:33 +0000 (14:18 +0000)]
remove 001_cdm.hsqldb.ddl in io layer as we do use H2 for tests now. Keeping both requires overhead in maintaining.

12 years agoremove 001_cdm.hsqldb.ddl in ext layer as we do use H2 for tests now. Keeping both...
Andreas Müller [Tue, 7 Aug 2012 14:18:00 +0000 (14:18 +0000)]
remove 001_cdm.hsqldb.ddl in ext layer as we do use H2 for tests now. Keeping both requires overhead in maintaining.

12 years agoremove 001_cdm.hsqldb.ddl in service layer as we do use H2 for tests now. Keeping...
Andreas Müller [Tue, 7 Aug 2012 14:16:56 +0000 (14:16 +0000)]
remove 001_cdm.hsqldb.ddl in service layer as we do use H2 for tests now. Keeping both requires overhead in maintaining.

12 years agoremove 001_cdm.hsqldb.ddl as we do use H2 for tests now. Keeping both requires overhe...
Andreas Müller [Tue, 7 Aug 2012 14:06:40 +0000 (14:06 +0000)]
remove 001_cdm.hsqldb.ddl as we do use H2 for tests now. Keeping both requires overhead in maintaining.

12 years agoresources to be made accessible to classes (trying again to commit)
Cherian Mathew [Mon, 6 Aug 2012 12:23:32 +0000 (12:23 +0000)]
resources to be made accessible to classes (trying again to commit)

12 years agoxml files from "./src/main/resources/eu/etaxonomy/cdm" need to be accessible to the...
Cherian Mathew [Mon, 6 Aug 2012 11:50:09 +0000 (11:50 +0000)]
xml files from "./src/main/resources/eu/etaxonomy/cdm" need to be accessible to the classes, so added resources section in build.

12 years agoremove other cdmlib dependencies then io, and remove build for apt
Andreas Müller [Mon, 6 Aug 2012 09:01:20 +0000 (09:01 +0000)]
remove other cdmlib dependencies then io, and remove build for apt

12 years agoremove dependency to cdmlib-commons to check if this fixes failing tests, partly...
Andreas Müller [Mon, 6 Aug 2012 08:49:22 +0000 (08:49 +0000)]
remove dependency to cdmlib-commons to check if this fixes failing tests, partly revert for r15808

12 years agoadded apt file for name catalogue web services
Cherian Mathew [Wed, 1 Aug 2012 08:34:51 +0000 (08:34 +0000)]
added apt file for name catalogue web services
added 'name catalogue' apt as sub item to the REST API item.

12 years agoNameCatalogueController.java :
Cherian Mathew [Wed, 1 Aug 2012 08:33:13 +0000 (08:33 +0000)]
NameCatalogueController.java :
- added endpoints which return documentation
- imporoved javadoc

pom.xml :
- added dependency to cdmlib-commons due to usage of cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/DocUtils.java