cdmlib.git
5 years agominor
Andreas Müller [Thu, 30 Aug 2018 11:36:50 +0000 (13:36 +0200)]
minor

5 years agoref #7709 use more generics for CdmCacher (not completed yet)
Andreas Müller [Thu, 30 Aug 2018 11:36:33 +0000 (13:36 +0200)]
ref #7709 use more generics for CdmCacher (not completed yet)

5 years agoref #7702 avoiding NPE in TargetEntityStates when pervious state is null
Andreas Kohlbecker [Wed, 29 Aug 2018 16:31:07 +0000 (18:31 +0200)]
ref #7702 avoiding NPE in TargetEntityStates when pervious state is null

5 years agoref #7686 Do not use null for keys in map (JSON error)
Patrick Plitzner [Wed, 29 Aug 2018 15:12:58 +0000 (17:12 +0200)]
ref #7686 Do not use null for keys in map (JSON error)

5 years agoref #7686 Do not ignore types without type status
Patrick Plitzner [Wed, 29 Aug 2018 14:34:31 +0000 (16:34 +0200)]
ref #7686 Do not ignore types without type status

5 years agoref #7686 Use titleCache if no identifier can be found
Patrick Plitzner [Wed, 29 Aug 2018 14:33:52 +0000 (16:33 +0200)]
ref #7686 Use titleCache if no identifier can be found

5 years agoref #7694: adapt typedesignation output for cdmlight export
Katja Luther [Tue, 28 Aug 2018 08:24:59 +0000 (10:24 +0200)]
ref #7694: adapt typedesignation output for cdmlight export

5 years agoref# 7682 remove default value for Point.precision
Andreas Müller [Mon, 27 Aug 2018 09:46:43 +0000 (11:46 +0200)]
ref# 7682 remove default value for Point.precision

5 years agoref #7075 fix bugs in MediaExcelImport
Andreas Müller [Fri, 24 Aug 2018 08:25:20 +0000 (10:25 +0200)]
ref #7075 fix bugs in MediaExcelImport

5 years agoref #7657 code refactoring
Patrick Plitzner [Wed, 22 Aug 2018 08:52:30 +0000 (10:52 +0200)]
ref #7657 code refactoring

5 years agoref #7657 Increase loading speed for matrix
Patrick Plitzner [Wed, 22 Aug 2018 06:39:41 +0000 (08:39 +0200)]
ref #7657 Increase loading speed for matrix

5 years agofix NPE in TypeDesignationSetManager.stringify(TypeDesignationSetManager.java:522)
Andreas Müller [Tue, 21 Aug 2018 14:05:47 +0000 (16:05 +0200)]
fix NPE in TypeDesignationSetManager.stringify(TypeDesignationSetManager.java:522)

6 years agofix NPE in CdmLightExport
Katja Luther [Mon, 20 Aug 2018 09:54:17 +0000 (11:54 +0200)]
fix NPE in CdmLightExport

6 years agoref #7666 adapt test for new doubtful handling in formatter
Andreas Müller [Mon, 20 Aug 2018 10:48:46 +0000 (12:48 +0200)]
ref #7666 adapt test for new doubtful handling in formatter

6 years agocleanup
Andreas Müller [Mon, 20 Aug 2018 09:52:36 +0000 (11:52 +0200)]
cleanup

6 years agoref #6682 split doubtful in rel doubtful and taxon doubtful + use full authorshipCach...
Andreas Müller [Mon, 20 Aug 2018 09:52:21 +0000 (11:52 +0200)]
ref #6682 split doubtful in rel doubtful and taxon doubtful + use full authorshipCache for MAN non-authors

6 years agoref #7664 adapt return type for many methods with defined typification
Andreas Müller [Fri, 17 Aug 2018 13:24:35 +0000 (15:24 +0200)]
ref #7664 adapt return type for many methods with defined typification

6 years agoUpdating develop poms back to pre merge state
jenkins [Fri, 17 Aug 2018 13:23:51 +0000 (15:23 +0200)]
Updating develop poms back to pre merge state

6 years agoMerge branch 'master' into develop
jenkins [Fri, 17 Aug 2018 13:23:51 +0000 (15:23 +0200)]
Merge branch 'master' into develop

6 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Fri, 17 Aug 2018 13:23:50 +0000 (15:23 +0200)]
updating develop poms to master versions to avoid merge conflicts

6 years agoMerge branch 'release/5.2.0'
jenkins [Fri, 17 Aug 2018 13:23:46 +0000 (15:23 +0200)]
Merge branch 'release/5.2.0'

6 years agoupdating poms for branch'release/5.2.0' with non-snapshot versions
jenkins [Fri, 17 Aug 2018 13:07:54 +0000 (15:07 +0200)]
updating poms for branch'release/5.2.0' with non-snapshot versions

6 years agoupdating poms for 5.3.0-SNAPSHOT development
jenkins [Fri, 17 Aug 2018 12:17:44 +0000 (14:17 +0200)]
updating poms for 5.3.0-SNAPSHOT development

6 years agoref #7578 adding missing json config entry for the generic api origin/release/5.2.0
Andreas Kohlbecker [Fri, 17 Aug 2018 11:26:40 +0000 (13:26 +0200)]
ref #7578 adding missing json config entry for the generic api

6 years agoremoving unused duplicate property PreservedSpecimenDTOs
Andreas Kohlbecker [Fri, 17 Aug 2018 10:06:40 +0000 (12:06 +0200)]
removing unused duplicate property PreservedSpecimenDTOs

6 years agofieldUnitDTO code cleaning
Katja Luther [Fri, 17 Aug 2018 09:37:58 +0000 (11:37 +0200)]
fieldUnitDTO code cleaning

6 years agoremoving merge conflict artifact from eclipse launcher
Andreas Kohlbecker [Fri, 17 Aug 2018 08:53:32 +0000 (10:53 +0200)]
removing merge conflict artifact from eclipse launcher

6 years agocleaning merge problem info in comment
Andreas Kohlbecker [Fri, 17 Aug 2018 08:30:24 +0000 (10:30 +0200)]
cleaning merge problem info in comment

6 years agocode cleaning
Katja Luther [Fri, 17 Aug 2018 08:44:00 +0000 (10:44 +0200)]
code cleaning

6 years agofix getPreservedSpecimen in fieldUnitDTO
Katja Luther [Fri, 17 Aug 2018 08:33:43 +0000 (10:33 +0200)]
fix getPreservedSpecimen in fieldUnitDTO

6 years agoAdd source of type aggregation to description
Patrick Plitzner [Fri, 17 Aug 2018 05:31:28 +0000 (07:31 +0200)]
Add source of type aggregation to description

6 years agoFix LazyInitializationException
Patrick Plitzner [Thu, 16 Aug 2018 10:10:27 +0000 (12:10 +0200)]
Fix LazyInitializationException

6 years agoref #6682 types for both directions
Andreas Müller [Thu, 16 Aug 2018 17:09:02 +0000 (19:09 +0200)]
ref #6682 types for both directions

6 years agoref #6682 try to fix failing query in TaxonDao
Andreas Müller [Thu, 16 Aug 2018 16:47:26 +0000 (18:47 +0200)]
ref #6682 try to fix failing query in TaxonDao

6 years agoref #6682 try to fix failing query in TaxonDao
Andreas Müller [Thu, 16 Aug 2018 16:15:43 +0000 (18:15 +0200)]
ref #6682 try to fix failing query in TaxonDao

6 years agoref #6682 revert relType DTO
Andreas Müller [Thu, 16 Aug 2018 16:09:16 +0000 (18:09 +0200)]
ref #6682 revert relType DTO

6 years agoref #6682 add types and deduplicateMisapplications parameter to web service
Andreas Müller [Thu, 16 Aug 2018 16:03:45 +0000 (18:03 +0200)]
ref #6682 add types and deduplicateMisapplications parameter to web service

6 years agoref #6682 add types and deduplicateMisapplications parameter to web service
Andreas Müller [Thu, 16 Aug 2018 15:53:08 +0000 (17:53 +0200)]
ref #6682 add types and deduplicateMisapplications parameter to web service

6 years agoref #6682 add typeUuid and try to fix missing type issue
Andreas Müller [Thu, 16 Aug 2018 15:12:30 +0000 (17:12 +0200)]
ref #6682 add typeUuid and try to fix missing type issue

6 years agoref #6682 fix misapplication deduplication issues
Andreas Müller [Thu, 16 Aug 2018 14:15:44 +0000 (16:15 +0200)]
ref #6682 fix misapplication deduplication issues

6 years agoref #6682 include doubtful
Andreas Müller [Thu, 16 Aug 2018 13:16:30 +0000 (15:16 +0200)]
ref #6682 include doubtful

6 years agoref #6682 use TaggedTextBuilder
Andreas Müller [Thu, 16 Aug 2018 11:55:45 +0000 (13:55 +0200)]
ref #6682 use TaggedTextBuilder

6 years agoref #6682 further fixes for taxon relationship formatting - remove sensu tags, includ...
Andreas Müller [Thu, 16 Aug 2018 10:59:58 +0000 (12:59 +0200)]
ref #6682 further fixes for taxon relationship formatting - remove sensu tags, include Invalid Designation, use ordinary term for type

6 years agoref #6682 further fixes for taxon relationship formatting - fix referenced entity...
Andreas Müller [Thu, 16 Aug 2018 10:17:15 +0000 (12:17 +0200)]
ref #6682 further fixes for taxon relationship formatting - fix referenced entity issues

6 years agorevert commit ff21181c
Katja Luther [Thu, 16 Aug 2018 09:42:07 +0000 (11:42 +0200)]
revert commit ff21181c

6 years agodeproxy of entities in TaggedTextBuilder
Andreas Kohlbecker [Thu, 16 Aug 2018 09:39:20 +0000 (11:39 +0200)]
deproxy of entities in TaggedTextBuilder

6 years agoref #6682 further fixes for taxon relationship formatting - relsec and authors
Andreas Müller [Thu, 16 Aug 2018 06:48:06 +0000 (08:48 +0200)]
ref #6682 further fixes for taxon relationship formatting - relsec and authors

6 years agoref #6682 further fixes for taxon relationship service - better separators
Andreas Müller [Thu, 16 Aug 2018 06:18:24 +0000 (08:18 +0200)]
ref #6682 further fixes for taxon relationship service - better separators

6 years agoref #6682 further fixes for taxon relationship service
Andreas Müller [Wed, 15 Aug 2018 22:49:15 +0000 (00:49 +0200)]
ref #6682 further fixes for taxon relationship service

6 years agoref #6682 further fixes for taxon relationship service
Andreas Müller [Wed, 15 Aug 2018 22:05:35 +0000 (00:05 +0200)]
ref #6682 further fixes for taxon relationship service

6 years agoref #6682 fix directions for taxonRelationship service
Andreas Müller [Wed, 15 Aug 2018 20:14:13 +0000 (22:14 +0200)]
ref #6682 fix directions for taxonRelationship service

6 years agoref #6682 further fixes for taxonRelationship service
Andreas Müller [Wed, 15 Aug 2018 20:07:36 +0000 (22:07 +0200)]
ref #6682 further fixes for taxonRelationship service

6 years agoref #6682 some changes to test taxon relationship service
Andreas Müller [Wed, 15 Aug 2018 19:13:42 +0000 (21:13 +0200)]
ref #6682 some changes to test taxon relationship service

6 years agoref #6682 adapt inverse MAN symbol in test
Andreas Müller [Wed, 15 Aug 2018 18:16:03 +0000 (20:16 +0200)]
ref #6682 adapt inverse MAN symbol in test

6 years agoref #6682 adapt taxon rel type symbols in test in for MAN inverse type
Andreas Müller [Wed, 15 Aug 2018 18:10:31 +0000 (20:10 +0200)]
ref #6682 adapt taxon rel type symbols in test in for MAN inverse type

6 years agoref #6682 first implementation of taxon relationship formatter and web service
Andreas Müller [Wed, 15 Aug 2018 17:30:56 +0000 (19:30 +0200)]
ref #6682 first implementation of taxon relationship formatter and web service

6 years agoref #7492 handled unpublished in NameCatalogueController.doGetTaxonInformation
Andreas Müller [Wed, 15 Aug 2018 15:47:07 +0000 (17:47 +0200)]
ref #7492 handled unpublished in NameCatalogueController.doGetTaxonInformation

6 years agocleanup
Andreas Müller [Wed, 15 Aug 2018 14:56:02 +0000 (16:56 +0200)]
cleanup

6 years agofix non compiling code in CommonServiceImpl (works on other installations but not...
Andreas Müller [Tue, 14 Aug 2018 12:01:17 +0000 (14:01 +0200)]
fix non compiling code in CommonServiceImpl (works on other installations but not on mine)

6 years agofix row count issue for CsvImportBase
Andreas Müller [Tue, 14 Aug 2018 12:00:25 +0000 (14:00 +0200)]
fix row count issue for CsvImportBase

6 years agocleanup
Andreas Müller [Tue, 14 Aug 2018 12:00:01 +0000 (14:00 +0200)]
cleanup

6 years agoadapt occurrence search to changes in derivedUnitFacade
Katja Luther [Wed, 15 Aug 2018 12:33:39 +0000 (14:33 +0200)]
adapt occurrence search to changes in derivedUnitFacade

6 years agoadapt cdm light test
Katja Luther [Wed, 15 Aug 2018 12:37:54 +0000 (14:37 +0200)]
adapt cdm light test

6 years agofix NPE in cdm light export
Katja Luther [Wed, 15 Aug 2018 12:22:58 +0000 (14:22 +0200)]
fix NPE in cdm light export

6 years agoMerge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Wed, 15 Aug 2018 12:04:47 +0000 (14:04 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

6 years agominor
Katja Luther [Wed, 15 Aug 2018 11:44:06 +0000 (13:44 +0200)]
minor

6 years agominor
Katja Luther [Wed, 15 Aug 2018 11:38:18 +0000 (13:38 +0200)]
minor

6 years agoadapt abcd import to changes in derivedUnitFacade
Katja Luther [Wed, 15 Aug 2018 11:18:14 +0000 (13:18 +0200)]
adapt abcd import to changes in derivedUnitFacade

6 years agofix test for getKindOfUnit
Katja Luther [Wed, 15 Aug 2018 11:17:07 +0000 (13:17 +0200)]
fix test for getKindOfUnit

6 years agoadapt test for cdm light to last changes
Katja Luther [Wed, 15 Aug 2018 11:00:52 +0000 (13:00 +0200)]
adapt test for cdm light to last changes

6 years agoMerge branch 'feature/specimenPortal' into develop
Katja Luther [Wed, 15 Aug 2018 10:52:58 +0000 (12:52 +0200)]
Merge branch 'feature/specimenPortal' into develop

6 years agoderivedUnitFacade should not give back the kindOfUnit for the fieldUnit only but...
Katja Luther [Wed, 15 Aug 2018 10:52:36 +0000 (12:52 +0200)]
derivedUnitFacade should not give back the kindOfUnit for the fieldUnit only but for the derived unit

6 years agoadapt sec ref title with datePublished freeText
Katja Luther [Wed, 15 Aug 2018 10:51:28 +0000 (12:51 +0200)]
adapt sec ref title with datePublished freeText

6 years agoadapt authorship string ion cdmlight
Katja Luther [Wed, 15 Aug 2018 09:32:36 +0000 (11:32 +0200)]
adapt authorship string ion cdmlight

6 years agoIncrease version number of site skin project
Patrick Plitzner [Wed, 15 Aug 2018 09:10:19 +0000 (11:10 +0200)]
Increase version number of site skin project

6 years agokindOfUnit for all derivates not only for field units feature/specimenPortal origin/feature/specimenPortal
Katja Luther [Wed, 15 Aug 2018 08:05:00 +0000 (10:05 +0200)]
kindOfUnit for all derivates not only for field units

6 years agoFix releases link
Patrick Plitzner [Wed, 15 Aug 2018 08:02:51 +0000 (10:02 +0200)]
Fix releases link

6 years agoRemove broken link
Patrick Plitzner [Tue, 14 Aug 2018 12:56:32 +0000 (14:56 +0200)]
Remove broken link

6 years agoMerge branch 'develop' into feature/specimenPortal
Katja Luther [Tue, 14 Aug 2018 08:21:54 +0000 (10:21 +0200)]
Merge branch 'develop' into feature/specimenPortal

6 years agosmaller changes on specimenDTOs
Katja Luther [Tue, 14 Aug 2018 08:21:37 +0000 (10:21 +0200)]
smaller changes on specimenDTOs

6 years agoref #7651 #7622 using nameService instead of CdmRepository to avoid bean factory...
Andreas Kohlbecker [Mon, 13 Aug 2018 22:52:42 +0000 (00:52 +0200)]
ref #7651 #7622 using nameService instead of CdmRepository to avoid bean factory problems

6 years agoref #7651 #7622 relaxing requirement for an available registration minter
Andreas Kohlbecker [Mon, 13 Aug 2018 21:38:16 +0000 (23:38 +0200)]
ref #7651 #7622 relaxing requirement for an available registration minter

6 years agoref #7622 addTypeDesignation() to receive registration uuids instead of objects
Andreas Kohlbecker [Mon, 13 Aug 2018 20:53:50 +0000 (22:53 +0200)]
ref #7622 addTypeDesignation() to receive registration uuids instead of objects

6 years agoref #7622 preliminarily moving all registration management methods fom cdm-vaadin...
Andreas Kohlbecker [Mon, 13 Aug 2018 17:30:27 +0000 (19:30 +0200)]
ref #7622 preliminarily moving all registration management methods fom cdm-vaadin into the RegistrationService - needs further refactoring

6 years agoref #7643: use freetext for bibliographic short citation
Katja Luther [Thu, 9 Aug 2018 08:19:42 +0000 (10:19 +0200)]
ref #7643: use freetext for bibliographic short citation

6 years agodo not throw an exception if metadata could not be loaded
Katja Luther [Wed, 8 Aug 2018 12:50:54 +0000 (14:50 +0200)]
do not throw an exception if metadata could not be loaded

6 years agofilter intext references in cdmlight export
Katja Luther [Wed, 8 Aug 2018 10:18:47 +0000 (12:18 +0200)]
filter intext references in cdmlight export

6 years agoref #7597 Use LongRunningTaskService for taxon aggregation
Patrick Plitzner [Wed, 8 Aug 2018 11:42:33 +0000 (13:42 +0200)]
ref #7597 Use LongRunningTaskService for taxon aggregation

6 years agoref #7597 Change label of aggregated taxon description
Patrick Plitzner [Tue, 7 Aug 2018 16:40:30 +0000 (18:40 +0200)]
ref #7597 Change label of aggregated taxon description

6 years agoref #7597 Fix row wrapper creation for direct description children
Patrick Plitzner [Tue, 7 Aug 2018 16:03:38 +0000 (18:03 +0200)]
ref #7597 Fix row wrapper creation for direct description children

6 years agoref #7597 Fix potential exception for multiple associated taxa
Patrick Plitzner [Tue, 7 Aug 2018 14:50:31 +0000 (16:50 +0200)]
ref #7597 Fix potential exception for multiple associated taxa

6 years agoref #7597 Use remote progress monitor for taxon aggregation
Patrick Plitzner [Tue, 7 Aug 2018 13:59:04 +0000 (15:59 +0200)]
ref #7597 Use remote progress monitor for taxon aggregation

6 years agoref #7597 Fix multi rep exception
Patrick Plitzner [Mon, 30 Jul 2018 11:58:17 +0000 (13:58 +0200)]
ref #7597 Fix multi rep exception

6 years agoref #7597 Extend compare wrapper to support all statistical measures
Patrick Plitzner [Mon, 30 Jul 2018 09:55:24 +0000 (11:55 +0200)]
ref #7597 Extend compare wrapper to support all statistical measures

6 years agoref #7597 Set taxon as cdm entity of update result
Patrick Plitzner [Mon, 30 Jul 2018 09:42:13 +0000 (11:42 +0200)]
ref #7597 Set taxon as cdm entity of update result

6 years agoref #7597 Implement taxon description aggregation
Patrick Plitzner [Mon, 30 Jul 2018 07:32:39 +0000 (09:32 +0200)]
ref #7597 Implement taxon description aggregation

6 years agocleanup
Andreas Müller [Tue, 7 Aug 2018 13:37:05 +0000 (15:37 +0200)]
cleanup

6 years agouse MediaDTO in DerivateDTO
Katja Luther [Tue, 7 Aug 2018 13:22:06 +0000 (15:22 +0200)]
use MediaDTO in DerivateDTO

6 years agoMerge branch 'develop' into feature/specimenPortal
Katja Luther [Tue, 7 Aug 2018 13:01:20 +0000 (15:01 +0200)]
Merge branch 'develop' into feature/specimenPortal

6 years agosmaller changes in SpecimenDTOs
Katja Luther [Tue, 7 Aug 2018 13:01:04 +0000 (15:01 +0200)]
smaller changes in SpecimenDTOs