Andreas Müller [Tue, 14 Aug 2018 12:01:17 +0000 (14:01 +0200)]
fix non compiling code in CommonServiceImpl (works on other installations but not on mine)
Andreas Müller [Tue, 14 Aug 2018 12:00:25 +0000 (14:00 +0200)]
fix row count issue for CsvImportBase
Andreas Müller [Tue, 14 Aug 2018 12:00:01 +0000 (14:00 +0200)]
cleanup
Katja Luther [Wed, 15 Aug 2018 12:33:39 +0000 (14:33 +0200)]
adapt occurrence search to changes in derivedUnitFacade
Katja Luther [Wed, 15 Aug 2018 12:37:54 +0000 (14:37 +0200)]
adapt cdm light test
Katja Luther [Wed, 15 Aug 2018 12:22:58 +0000 (14:22 +0200)]
fix NPE in cdm light export
Katja Luther [Wed, 15 Aug 2018 12:04:47 +0000 (14:04 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Wed, 15 Aug 2018 11:44:06 +0000 (13:44 +0200)]
minor
Katja Luther [Wed, 15 Aug 2018 11:38:18 +0000 (13:38 +0200)]
minor
Katja Luther [Wed, 15 Aug 2018 11:18:14 +0000 (13:18 +0200)]
adapt abcd import to changes in derivedUnitFacade
Katja Luther [Wed, 15 Aug 2018 11:17:07 +0000 (13:17 +0200)]
fix test for getKindOfUnit
Katja Luther [Wed, 15 Aug 2018 11:00:52 +0000 (13:00 +0200)]
adapt test for cdm light to last changes
Katja Luther [Wed, 15 Aug 2018 10:52:58 +0000 (12:52 +0200)]
Merge branch 'feature/specimenPortal' into develop
Katja Luther [Wed, 15 Aug 2018 10:52:36 +0000 (12:52 +0200)]
derivedUnitFacade should not give back the kindOfUnit for the fieldUnit only but for the derived unit
Katja Luther [Wed, 15 Aug 2018 10:51:28 +0000 (12:51 +0200)]
adapt sec ref title with datePublished freeText
Katja Luther [Wed, 15 Aug 2018 09:32:36 +0000 (11:32 +0200)]
adapt authorship string ion cdmlight
Patrick Plitzner [Wed, 15 Aug 2018 09:10:19 +0000 (11:10 +0200)]
Increase version number of site skin project
Katja Luther [Wed, 15 Aug 2018 08:05:00 +0000 (10:05 +0200)]
kindOfUnit for all derivates not only for field units
Patrick Plitzner [Wed, 15 Aug 2018 08:02:51 +0000 (10:02 +0200)]
Fix releases link
Patrick Plitzner [Tue, 14 Aug 2018 12:56:32 +0000 (14:56 +0200)]
Remove broken link
Katja Luther [Tue, 14 Aug 2018 08:21:54 +0000 (10:21 +0200)]
Merge branch 'develop' into feature/specimenPortal
Katja Luther [Tue, 14 Aug 2018 08:21:37 +0000 (10:21 +0200)]
smaller changes on specimenDTOs
Andreas Kohlbecker [Mon, 13 Aug 2018 22:52:42 +0000 (00:52 +0200)]
ref #7651 #7622 using nameService instead of CdmRepository to avoid bean factory problems
Andreas Kohlbecker [Mon, 13 Aug 2018 21:38:16 +0000 (23:38 +0200)]
ref #7651 #7622 relaxing requirement for an available registration minter
Andreas Kohlbecker [Mon, 13 Aug 2018 20:53:50 +0000 (22:53 +0200)]
ref #7622 addTypeDesignation() to receive registration uuids instead of objects
Andreas Kohlbecker [Mon, 13 Aug 2018 17:30:27 +0000 (19:30 +0200)]
ref #7622 preliminarily moving all registration management methods fom cdm-vaadin into the RegistrationService - needs further refactoring
Katja Luther [Thu, 9 Aug 2018 08:19:42 +0000 (10:19 +0200)]
ref #7643: use freetext for bibliographic short citation
Katja Luther [Wed, 8 Aug 2018 12:50:54 +0000 (14:50 +0200)]
do not throw an exception if metadata could not be loaded
Katja Luther [Wed, 8 Aug 2018 10:18:47 +0000 (12:18 +0200)]
filter intext references in cdmlight export
Patrick Plitzner [Wed, 8 Aug 2018 11:42:33 +0000 (13:42 +0200)]
ref #7597 Use LongRunningTaskService for taxon aggregation
Patrick Plitzner [Tue, 7 Aug 2018 16:40:30 +0000 (18:40 +0200)]
ref #7597 Change label of aggregated taxon description
Patrick Plitzner [Tue, 7 Aug 2018 16:03:38 +0000 (18:03 +0200)]
ref #7597 Fix row wrapper creation for direct description children
Patrick Plitzner [Tue, 7 Aug 2018 14:50:31 +0000 (16:50 +0200)]
ref #7597 Fix potential exception for multiple associated taxa
Patrick Plitzner [Tue, 7 Aug 2018 13:59:04 +0000 (15:59 +0200)]
ref #7597 Use remote progress monitor for taxon aggregation
Patrick Plitzner [Mon, 30 Jul 2018 11:58:17 +0000 (13:58 +0200)]
ref #7597 Fix multi rep exception
Patrick Plitzner [Mon, 30 Jul 2018 09:55:24 +0000 (11:55 +0200)]
ref #7597 Extend compare wrapper to support all statistical measures
Patrick Plitzner [Mon, 30 Jul 2018 09:42:13 +0000 (11:42 +0200)]
ref #7597 Set taxon as cdm entity of update result
Patrick Plitzner [Mon, 30 Jul 2018 07:32:39 +0000 (09:32 +0200)]
ref #7597 Implement taxon description aggregation
Andreas Müller [Tue, 7 Aug 2018 13:37:05 +0000 (15:37 +0200)]
cleanup
Katja Luther [Tue, 7 Aug 2018 13:22:06 +0000 (15:22 +0200)]
use MediaDTO in DerivateDTO
Katja Luther [Tue, 7 Aug 2018 13:01:20 +0000 (15:01 +0200)]
Merge branch 'develop' into feature/specimenPortal
Katja Luther [Tue, 7 Aug 2018 13:01:04 +0000 (15:01 +0200)]
smaller changes in SpecimenDTOs
Katja Luther [Mon, 6 Aug 2018 10:30:12 +0000 (12:30 +0200)]
adapt cdm light test to changes
Katja Luther [Mon, 6 Aug 2018 09:53:14 +0000 (11:53 +0200)]
adapt tests to changes in biocase impot
Katja Luther [Mon, 6 Aug 2018 09:42:43 +0000 (11:42 +0200)]
all DTOs for cdm entities should extend TypedEntityReference
Katja Luther [Mon, 6 Aug 2018 08:44:20 +0000 (10:44 +0200)]
add hasImage to biocase import
Katja Luther [Mon, 6 Aug 2018 08:29:07 +0000 (10:29 +0200)]
fix handling of sec reference in cdm light export
Andreas Kohlbecker [Fri, 3 Aug 2018 17:45:09 +0000 (19:45 +0200)]
ref #7590 fixing join types for restriction operations
Andreas Kohlbecker [Fri, 3 Aug 2018 16:45:03 +0000 (18:45 +0200)]
ref #7611 implementing typeDesignation media service and MediaDTO
Andreas Kohlbecker [Fri, 3 Aug 2018 16:43:45 +0000 (18:43 +0200)]
typo in documentation
Andreas Kohlbecker [Fri, 3 Aug 2018 14:40:26 +0000 (16:40 +0200)]
add missing loggin to remote controllers
Andreas Kohlbecker [Fri, 3 Aug 2018 14:39:03 +0000 (16:39 +0200)]
ref #7591 ReferencePropertyDefinitions adding missing data to 'all'
Andreas Kohlbecker [Fri, 3 Aug 2018 12:55:23 +0000 (14:55 +0200)]
fixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator - test implemented
Katja Luther [Fri, 3 Aug 2018 10:04:42 +0000 (12:04 +0200)]
adapt country path in abcd query
Katja Luther [Fri, 3 Aug 2018 09:58:16 +0000 (11:58 +0200)]
adapt country path in abcd query
Andreas Kohlbecker [Fri, 3 Aug 2018 09:53:50 +0000 (11:53 +0200)]
fixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator
Andreas Kohlbecker [Fri, 3 Aug 2018 09:48:35 +0000 (11:48 +0200)]
fixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator
Katja Luther [Fri, 3 Aug 2018 08:30:46 +0000 (10:30 +0200)]
parse collection date for abcd import
Katja Luther [Fri, 3 Aug 2018 07:08:46 +0000 (09:08 +0200)]
fix collector import if it is a single string value in gatheringAgentsText
Andreas Kohlbecker [Tue, 31 Jul 2018 16:02:17 +0000 (18:02 +0200)]
comment regarding #7608 in DerivedUnitFacadeCacheStrategy
Andreas Kohlbecker [Tue, 31 Jul 2018 15:54:27 +0000 (17:54 +0200)]
ref #7608 string representations for media types implemented
Andreas Müller [Tue, 31 Jul 2018 11:00:15 +0000 (13:00 +0200)]
ref #7429 fix date parsing in name parser test
Andreas Müller [Tue, 31 Jul 2018 10:16:45 +0000 (12:16 +0200)]
cleanup
Andreas Müller [Tue, 31 Jul 2018 10:15:24 +0000 (12:15 +0200)]
fix #7429 improving verbatim time period parsing
Andreas Kohlbecker [Tue, 31 Jul 2018 09:57:32 +0000 (11:57 +0200)]
fix #7607 TypeDesignationSetManager: types without enclosing brackets
Andreas Müller [Mon, 30 Jul 2018 14:20:23 +0000 (16:20 +0200)]
ref #7429 fixing test for verbatim time period parsing
Andreas Müller [Mon, 30 Jul 2018 11:50:43 +0000 (13:50 +0200)]
ref #7530 final changes for WfoAccess import
Andreas Müller [Mon, 30 Jul 2018 11:48:33 +0000 (13:48 +0200)]
ref #7429 "verbatimDate" [realDate] format implemented for VerbatimTimePeriodParser
Andreas Müller [Wed, 4 Jul 2018 09:16:30 +0000 (11:16 +0200)]
ref #7530 latest changes to WfoAccess import
Katja Luther [Mon, 30 Jul 2018 10:47:58 +0000 (12:47 +0200)]
mend
ref #7599: minor
Katja Luther [Mon, 30 Jul 2018 10:46:53 +0000 (12:46 +0200)]
ref
Patrick Plitzner [Mon, 30 Jul 2018 07:05:54 +0000 (09:05 +0200)]
ref #7597 Refactor aggregation method + add taxon aggregation method
Andreas Kohlbecker [Fri, 27 Jul 2018 19:08:32 +0000 (21:08 +0200)]
fix #7591 ReferencePropertyDefinitions adding 'General' and using 'all' as default
Patrick Plitzner [Fri, 27 Jul 2018 14:09:00 +0000 (16:09 +0200)]
ref #7597 Refactor aggregation method
Patrick Plitzner [Fri, 27 Jul 2018 12:18:53 +0000 (14:18 +0200)]
ref #7509 Add "computed" flag to description
Patrick Plitzner [Fri, 27 Jul 2018 09:31:48 +0000 (11:31 +0200)]
ref #7589 Improve description search when adding specimens to the matrix
Andreas Kohlbecker [Fri, 27 Jul 2018 09:15:08 +0000 (11:15 +0200)]
ref #7590 documentation
Andreas Kohlbecker [Fri, 27 Jul 2018 06:49:53 +0000 (08:49 +0200)]
ref #7590 replacing not flag in restrictions by AND_NOT and OR_NOT operators
Andreas Kohlbecker [Fri, 27 Jul 2018 06:41:52 +0000 (08:41 +0200)]
ref #7590 implementing AND and OR operator for restrictions and harmonizing code
Patrick Plitzner [Thu, 26 Jul 2018 15:09:53 +0000 (17:09 +0200)]
ref #7589 Delete taxon node from descriptive data set
Patrick Plitzner [Thu, 26 Jul 2018 15:09:21 +0000 (17:09 +0200)]
Fix possible NoSuchElementException
Katja Luther [Thu, 26 Jul 2018 11:04:37 +0000 (13:04 +0200)]
Merge branch 'develop' into specimenPortal
Katja Luther [Thu, 26 Jul 2018 11:02:17 +0000 (13:02 +0200)]
minor
Katja Luther [Thu, 26 Jul 2018 10:57:46 +0000 (12:57 +0200)]
minor
Katja Luther [Thu, 26 Jul 2018 10:54:34 +0000 (12:54 +0200)]
move getFieldUnits to findFieldUnits
Katja Luther [Thu, 26 Jul 2018 10:27:19 +0000 (12:27 +0200)]
first implementation for specimen page with DTOs
Katja Luther [Thu, 26 Jul 2018 10:19:56 +0000 (12:19 +0200)]
adding new SpecimenOrObservationType and smaller changes
Katja Luther [Thu, 26 Jul 2018 09:15:42 +0000 (11:15 +0200)]
smaller changes in ABCD import
Patrick Plitzner [Thu, 26 Jul 2018 08:02:31 +0000 (10:02 +0200)]
Remove description from DescriptiveDataSet during deletion
Patrick Plitzner [Thu, 26 Jul 2018 08:00:49 +0000 (10:00 +0200)]
Fix dataset removal method (possibly copy&paste error)
Andreas Kohlbecker [Wed, 25 Jul 2018 17:15:03 +0000 (19:15 +0200)]
ref #7573 adding AGTENTBASE to CdmPermissionClass and creating generic RoleProber
Katja Luther [Tue, 24 Jul 2018 13:58:31 +0000 (15:58 +0200)]
fix #7542: first remove synoným then add it to new accepted taxon to avoid orphan synonyms
Andreas Kohlbecker [Tue, 24 Jul 2018 12:38:36 +0000 (14:38 +0200)]
fix #7578 DefaultValueProcessor to serialize all null numbers as null
Andreas Kohlbecker [Tue, 24 Jul 2018 07:10:49 +0000 (09:10 +0200)]
ref #7223 add in null case to ReferencePropertyDefinitions to provide all possible fields
Patrick Plitzner [Mon, 23 Jul 2018 16:02:16 +0000 (18:02 +0200)]
Add service method to find a description for a dataset
Andreas Kohlbecker [Thu, 19 Jul 2018 08:54:59 +0000 (10:54 +0200)]
ref #7348 implementing registrationWorkingSet service endpoint and harmonizing logging
Andreas Kohlbecker [Thu, 19 Jul 2018 06:29:20 +0000 (08:29 +0200)]
ref #7561 removing associated name and protologue from OccurrencePortalController and FieldUnitDTO
Andreas Kohlbecker [Thu, 19 Jul 2018 06:28:08 +0000 (08:28 +0200)]
ref #7348 ordering registrations by identifier
Andreas Kohlbecker [Thu, 19 Jul 2018 06:26:54 +0000 (08:26 +0200)]
ref #7348 stripping .json and .xml from reguest urls
Andreas Kohlbecker [Mon, 16 Jul 2018 12:57:32 +0000 (14:57 +0200)]
ref #7550 pluggable Role tests for the UserHelper