Katja Luther [Wed, 7 Sep 2016 07:39:45 +0000 (09:39 +0200)]
minor changes in excel import
Katja Luther [Tue, 6 Sep 2016 07:48:37 +0000 (09:48 +0200)]
adding missing test file for tropicos import
Katja Luther [Sun, 4 Sep 2016 19:12:13 +0000 (21:12 +0200)]
extend excel import to cover simple tropicos data
Andreas Müller [Fri, 2 Sep 2016 11:17:30 +0000 (13:17 +0200)]
ref #6032 test name parser support for hybrid ranks and non-hybrids
Andreas Müller [Fri, 2 Sep 2016 10:01:26 +0000 (12:01 +0200)]
ref #6030 Add additional test for genus hybrid formula parsing
Katja Luther [Fri, 2 Sep 2016 10:36:20 +0000 (12:36 +0200)]
fix #5893: set parse reference public to use it in fauna europaea import
Andreas Müller [Fri, 2 Sep 2016 09:47:33 +0000 (11:47 +0200)]
fix #6030 Parse Genus hybrid formulas correctly
Patrick Plitzner [Wed, 31 Aug 2016 08:36:56 +0000 (10:36 +0200)]
ref #6045 Add test for getAncestor()
Katja Luther [Wed, 31 Aug 2016 12:52:43 +0000 (14:52 +0200)]
fix #6045: fixing the NaturalOrderComparator and complete the test
Patrick Plitzner [Tue, 30 Aug 2016 14:07:56 +0000 (16:07 +0200)]
ref #6045 Fix NPE for TaxonNaturalComparator
- fix getAncestors() method of taxon node
- added JUnit test
Katja Luther [Fri, 26 Aug 2016 10:36:03 +0000 (12:36 +0200)]
fix #5869 adapt implementation for reusing names or taxa with remoting
Katja Luther [Thu, 25 Aug 2016 08:26:02 +0000 (10:26 +0200)]
ref #5837 implement search for nomenclatural title
Patrick Plitzner [Tue, 23 Aug 2016 13:27:46 +0000 (15:27 +0200)]
ref #6042 Avoid -title cache generation not implemented- for citations
in specimen table view
Katja Luther [Tue, 23 Aug 2016 09:47:31 +0000 (11:47 +0200)]
fix #5828: add abbrevTitleCache and titleCache to uuidAndTitleCache
Katja Luther [Tue, 23 Aug 2016 08:17:44 +0000 (10:17 +0200)]
revert the changes in representation of rank infraspecific unranked
Patrick Plitzner [Tue, 16 Aug 2016 07:39:05 +0000 (09:39 +0200)]
Remove @Ignore from test
Patrick Plitzner [Mon, 15 Aug 2016 13:51:28 +0000 (15:51 +0200)]
Fix merge problems
Patrick Plitzner [Mon, 15 Aug 2016 09:13:55 +0000 (11:13 +0200)]
fix #6001 Clean up multiple sourceNotLinked() methods
Patrick Plitzner [Mon, 15 Aug 2016 06:43:54 +0000 (08:43 +0200)]
Fix titlecache issues for specimen table in data portal
- Use Link class for every link
- Open all links in new window
Katja Luther [Fri, 12 Aug 2016 08:26:38 +0000 (10:26 +0200)]
smaller changes
Katja Luther [Fri, 12 Aug 2016 07:49:53 +0000 (09:49 +0200)]
specimen import changes
Patrick Plitzner [Thu, 11 Aug 2016 13:20:33 +0000 (15:20 +0200)]
Import specimen scans with StillImage type
Patrick Plitzner [Thu, 11 Aug 2016 13:19:44 +0000 (15:19 +0200)]
Remove unneccesary casts
Patrick Plitzner [Wed, 10 Aug 2016 08:14:48 +0000 (10:14 +0200)]
ref #5448 Change abbreviation for unranked infraspecific rank
Andreas Kohlbecker [Thu, 4 Aug 2016 12:30:01 +0000 (14:30 +0200)]
fix #6037 per batch transction commit implemented for excel imports
Andreas Müller [Mon, 1 Aug 2016 14:13:29 +0000 (16:13 +0200)]
#5751 remove version numbers from cdmlib-db and some cleanup
Andreas Müller [Mon, 1 Aug 2016 13:20:59 +0000 (15:20 +0200)]
#5751 finish redo r28780
* use cdmlib-test in persistence for 2 antrun plugin and hibernate3 plugin
Andreas Müller [Mon, 1 Aug 2016 13:15:38 +0000 (15:15 +0200)]
#5751 Partly redo r28780,
* remove com.mchange from cdmlib-remote-webapp test scope
* use cdmlib-db in persistence for 2 further plugins
Andreas Müller [Mon, 1 Aug 2016 12:04:03 +0000 (14:04 +0200)]
#5751 further redo r28776, handle c3p0 via cdmlib-db in persistence
Andreas Müller [Mon, 1 Aug 2016 11:51:18 +0000 (13:51 +0200)]
#5751 further redo r28776, add cdmlib-db to persistence and remote-webapp
Andreas Müller [Mon, 1 Aug 2016 11:20:45 +0000 (13:20 +0200)]
#5751 Partly redo r28776, add c3p0 and mchange to cdmlib-db
* r28776 had been reverted due to problems, try to redo those parts that
do not create problems
Andreas Müller [Thu, 28 Jul 2016 14:04:12 +0000 (16:04 +0200)]
#3868 Add nothovar. test
Andreas Müller [Thu, 28 Jul 2016 10:40:04 +0000 (12:40 +0200)]
#6000 fix missing default color
Andreas Müller [Wed, 27 Jul 2016 15:46:30 +0000 (17:46 +0200)]
#6000 Add static methods and uuids for new PAT terms
Andreas Müller [Wed, 27 Jul 2016 15:13:13 +0000 (17:13 +0200)]
#6000 Add some new PresenceAbsenceTerms from Cyprus and Cuba
* Invasive changed to naturalized invasive (Cyprus, according to Pysek)
* naturalized invasive: presence questionable (Cyprus)
* naturalized non-invasive (Cyprus)
* naturalized non-invasive: presence questionable (Cyprus)
* naturalised: presence questionable (Cuba)
* casual: presence questionable (Cuba)
* casual: reported in error (Cuba)
Andreas Müller [Wed, 27 Jul 2016 15:09:21 +0000 (17:09 +0200)]
#6000 Use new CASUAL Method instead of derpeacted INTRODUCED_ADVENTITIOUS
Andreas Müller [Wed, 27 Jul 2016 11:38:17 +0000 (13:38 +0200)]
#6000 Unify some PresenceAbsenceTerms (merge naturalized, rename adventitious -> casual, etc)
Patrick Plitzner [Mon, 25 Jul 2016 08:05:47 +0000 (10:05 +0200)]
Improve import report
Patrick Plitzner [Thu, 21 Jul 2016 19:14:15 +0000 (21:14 +0200)]
#5251 Fix Incorrect taxon source attachments
Patrick Plitzner [Tue, 19 Jul 2016 15:16:18 +0000 (17:16 +0200)]
Improved import report
Katja Luther [Tue, 19 Jul 2016 13:50:06 +0000 (15:50 +0200)]
set the tests to ignore until the dna import is fixed again
Katja Luther [Tue, 19 Jul 2016 13:46:35 +0000 (15:46 +0200)]
fix merge problems
Katja Luther [Tue, 19 Jul 2016 13:26:17 +0000 (15:26 +0200)]
fix merge problems
Katja Luther [Tue, 19 Jul 2016 13:24:38 +0000 (15:24 +0200)]
fix merge problem
Katja Luther [Tue, 19 Jul 2016 13:13:54 +0000 (15:13 +0200)]
minor
Katja Luther [Tue, 19 Jul 2016 12:59:39 +0000 (14:59 +0200)]
minor
Katja Luther [Tue, 19 Jul 2016 12:56:12 +0000 (14:56 +0200)]
missing changes in test
Patrick Plitzner [Tue, 19 Jul 2016 12:52:35 +0000 (14:52 +0200)]
Avoid double dot at end of field unit titlecache
Patrick Plitzner [Tue, 19 Jul 2016 12:19:39 +0000 (14:19 +0200)]
Improve ABCD import report
Katja Luther [Tue, 19 Jul 2016 12:52:28 +0000 (14:52 +0200)]
missing changes in taxonDao
Katja Luther [Tue, 19 Jul 2016 12:38:51 +0000 (14:38 +0200)]
minor
Katja Luther [Tue, 19 Jul 2016 12:37:11 +0000 (14:37 +0200)]
minor
Katja Luther [Tue, 19 Jul 2016 12:14:38 +0000 (14:14 +0200)]
delete the excluded taxa parameter for UuidAndTitleCache of classificationService
Katja Luther [Tue, 19 Jul 2016 12:13:05 +0000 (14:13 +0200)]
Revert "getUuidAndTitleCache of classificationservice does not need the excluded taxa"
This reverts commit
1b553592f0055e0fec1ab3878236fa0ecad1bd17.
Katja Luther [Tue, 19 Jul 2016 12:08:28 +0000 (14:08 +0200)]
hamonization of specimen import
Katja Luther [Tue, 19 Jul 2016 12:06:29 +0000 (14:06 +0200)]
first implementation for harmonization of import of specimen data
Katja Luther [Tue, 19 Jul 2016 12:05:15 +0000 (14:05 +0200)]
sortindex updater utilities
Katja Luther [Tue, 19 Jul 2016 11:58:08 +0000 (13:58 +0200)]
getUuidAndTitleCache of classificationservice does not need the excluded taxa
Andreas Müller [Mon, 18 Jul 2016 13:41:58 +0000 (15:41 +0200)]
Allow whitespace after species epithet hybrid sign
Andreas Müller [Mon, 18 Jul 2016 12:54:14 +0000 (14:54 +0200)]
#3868 Handle notho ranks correctly while formatting
Patrick Plitzner [Mon, 18 Jul 2016 04:33:28 +0000 (06:33 +0200)]
Use title cache as fallback for specimen DTO for portal table
Andreas Müller [Fri, 15 Jul 2016 11:33:51 +0000 (13:33 +0200)]
#5981 Add abbreviation to Rank "Cultivar"
Andreas Müller [Fri, 15 Jul 2016 11:18:41 +0000 (13:18 +0200)]
Use EN_DASH in E+M Condensed Distribution
Andreas Müller [Thu, 14 Jul 2016 14:22:12 +0000 (16:22 +0200)]
#5777 Replace dash type in PAT symbols
Andreas Müller [Thu, 14 Jul 2016 13:22:17 +0000 (15:22 +0200)]
#5777 Fix symbol reading for PresenceAbsenceTerm csv
Andreas Müller [Thu, 14 Jul 2016 11:17:27 +0000 (13:17 +0200)]
Add isInfraGenericButNotSpeciesGroup() method to Rank
Patrick Plitzner [Wed, 13 Jul 2016 10:26:02 +0000 (12:26 +0200)]
Pass pageSize and pageNumber to list method
Katja Luther [Mon, 11 Jul 2016 10:31:03 +0000 (12:31 +0200)]
small changes in CsvNameExport
Andreas Kohlbecker [Mon, 11 Jul 2016 08:54:09 +0000 (10:54 +0200)]
It seems as if oclc number are no longer supported by the MobotOpenUrl api, test ignored
Katja Luther [Mon, 11 Jul 2016 08:16:16 +0000 (10:16 +0200)]
small change in CdvNameExport
Andreas Müller [Thu, 14 Jul 2016 15:02:12 +0000 (17:02 +0200)]
#5778 implement first version for PAT symbols update
Andreas Müller [Mon, 11 Jul 2016 15:06:20 +0000 (17:06 +0200)]
#3925 First untested implementation for move excluded to TaxonNode
Andreas Müller [Mon, 11 Jul 2016 15:04:45 +0000 (17:04 +0200)]
#5976 First partial implementation for updateSortIndex
Andreas Müller [Mon, 11 Jul 2016 12:30:46 +0000 (14:30 +0200)]
#4965 Implement general solution for getDatabase() in
WrappedCdmDataSource
Andreas Müller [Fri, 8 Jul 2016 18:36:39 +0000 (20:36 +0200)]
#5921 Change symbol for congruence relationship.
Andreas Müller [Fri, 8 Jul 2016 17:59:27 +0000 (19:59 +0200)]
#5826 Clean up names with empty name descriptions
Andreas Müller [Fri, 8 Jul 2016 16:05:36 +0000 (18:05 +0200)]
#5875 Add isDefault flag to DescriptionBase
Andreas Müller [Fri, 8 Jul 2016 15:18:00 +0000 (17:18 +0200)]
#5970 Add allowOverride
Andreas Müller [Fri, 8 Jul 2016 15:16:18 +0000 (17:16 +0200)]
Add schema updater for v4.0-v4.1
Andreas Müller [Fri, 8 Jul 2016 15:25:49 +0000 (17:25 +0200)]
#5970 Add allowOverride and refactor CdmPreference
Andreas Müller [Fri, 8 Jul 2016 12:35:11 +0000 (14:35 +0200)]
#3958 Latest update to IPreferenceService classes
Andreas Müller [Fri, 8 Jul 2016 11:36:41 +0000 (13:36 +0200)]
Add TaxonBase.secMicroReference to test dtd
Andreas Müller [Fri, 8 Jul 2016 10:57:05 +0000 (12:57 +0200)]
Unignore MobotOpenUrlServices
Andreas Müller [Fri, 8 Jul 2016 10:49:31 +0000 (12:49 +0200)]
Cleanup
Andreas Müller [Thu, 7 Jul 2016 14:22:07 +0000 (16:22 +0200)]
NameParser: allow letter for issue
Patrick Plitzner [Thu, 7 Jul 2016 12:57:13 +0000 (14:57 +0200)]
Add javadoc
Patrick Plitzner [Thu, 7 Jul 2016 12:46:18 +0000 (14:46 +0200)]
Merge branch 'develop' into csvExport
Patrick Plitzner [Thu, 7 Jul 2016 11:36:21 +0000 (13:36 +0200)]
#5890 pass classification uuid instead of root node uuid
Patrick Plitzner [Wed, 6 Jul 2016 16:35:53 +0000 (18:35 +0200)]
name
Patrick Plitzner [Wed, 6 Jul 2016 15:22:17 +0000 (17:22 +0200)]
#5890 Evaluate taxon node based on selected cassification or taxon
jenkins [Wed, 6 Jul 2016 14:10:51 +0000 (16:10 +0200)]
Updating develop poms back to pre merge state
jenkins [Wed, 6 Jul 2016 14:10:50 +0000 (16:10 +0200)]
Merge branch 'master' into develop
jenkins [Wed, 6 Jul 2016 14:10:49 +0000 (16:10 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 6 Jul 2016 14:10:45 +0000 (16:10 +0200)]
Merge branch 'release/4.2.0'
jenkins [Wed, 6 Jul 2016 13:53:55 +0000 (15:53 +0200)]
updating poms for branch'release/4.2.0' with non-snapshot versions
jenkins [Wed, 6 Jul 2016 13:38:49 +0000 (15:38 +0200)]
updating poms for 4.3.0-SNAPSHOT development
Andreas Müller [Wed, 6 Jul 2016 12:57:05 +0000 (14:57 +0200)]
#5960 Use abbrevTitle for reference parsing
Andreas Müller [Wed, 6 Jul 2016 12:51:10 +0000 (14:51 +0200)]
#5958 Fix NPE in findTaxaByName with missing clazz param (II)
Katja Luther [Wed, 6 Jul 2016 12:40:06 +0000 (14:40 +0200)]
minor
Katja Luther [Wed, 6 Jul 2016 11:18:05 +0000 (13:18 +0200)]
fix failing editor test because of updateSortindex in mergeEntityListener