Andreas Müller [Mon, 8 Feb 2021 15:53:34 +0000 (16:53 +0100)]
ref #7287 unignore tests on CondensedDistributionComposerBase subclasses
Andreas Müller [Mon, 8 Feb 2021 15:52:24 +0000 (16:52 +0100)]
cleanup
Andreas Kohlbecker [Mon, 8 Feb 2021 14:21:55 +0000 (15:21 +0100)]
fix #7529 adding PUBLISH group to FirstDataInserter
Andreas Müller [Mon, 8 Feb 2021 10:11:21 +0000 (11:11 +0100)]
cleanup
Andreas Müller [Mon, 8 Feb 2021 10:11:10 +0000 (11:11 +0100)]
ref #9457 fix missing space in HQL (cont.)
Andreas Müller [Mon, 8 Feb 2021 09:47:30 +0000 (10:47 +0100)]
fix #9457 fix missing space in HQL
Andreas Müller [Sat, 6 Feb 2021 20:33:22 +0000 (21:33 +0100)]
rename method
Andreas Müller [Sat, 6 Feb 2021 20:32:49 +0000 (21:32 +0100)]
fix compilation issue in SetMap
Andreas Müller [Sat, 6 Feb 2021 20:11:26 +0000 (21:11 +0100)]
cleanup
Andreas Müller [Sat, 6 Feb 2021 20:03:05 +0000 (21:03 +0100)]
ref #9143 rename variable name for preferComputed->preferAggregated and update javadocs
Andreas Müller [Sat, 6 Feb 2021 19:45:19 +0000 (20:45 +0100)]
ref #9143 remove preferComputed rule as default from calling DefilterDistributions.filterDistributions(...) methods
Andreas Müller [Sat, 6 Feb 2021 19:38:44 +0000 (20:38 +0100)]
use SetMap in DescriptionUtility
Andreas Müller [Fri, 5 Feb 2021 17:36:18 +0000 (18:36 +0100)]
ref #5095 fixing variable name for oahServerURI
Andreas Müller [Fri, 5 Feb 2021 16:13:59 +0000 (17:13 +0100)]
fix #6324 fix taxon node dozer mapping for TDWG Ontology (cont.) - add missing mappings-deep.xml changes
Andreas Müller [Fri, 5 Feb 2021 15:54:26 +0000 (16:54 +0100)]
fix #6324 fix taxon node dozer mapping for TDWG Ontology
Andreas Müller [Fri, 5 Feb 2021 12:26:18 +0000 (13:26 +0100)]
fix #6324 fix synonym dozer mapping for TDWG Ontology
Andreas Müller [Fri, 5 Feb 2021 12:22:39 +0000 (13:22 +0100)]
ref #6324 add toString() methods to TDWG classes for debugging
Andreas Müller [Fri, 5 Feb 2021 12:21:53 +0000 (13:21 +0100)]
cleanup
Andreas Müller [Fri, 5 Feb 2021 08:47:39 +0000 (09:47 +0100)]
ref #6714 remove commented hibernate3-maven-plugin from pom
Andreas Müller [Thu, 4 Feb 2021 22:23:39 +0000 (23:23 +0100)]
ref #9359 remove test scope from objenesis
Andreas Müller [Thu, 4 Feb 2021 19:51:11 +0000 (20:51 +0100)]
ref #9359, ref #5095 upgrade dozer form 5.5.1 to 6.5.0 and use dozer-spring
Andreas Müller [Thu, 4 Feb 2021 19:02:01 +0000 (20:02 +0100)]
cleanup
Andreas Müller [Thu, 4 Feb 2021 17:38:49 +0000 (18:38 +0100)]
ref #3403 , ref #4716, ref #3332, ref #9359 update dozer to version 5.5.1
Andreas Müller [Thu, 4 Feb 2021 17:29:41 +0000 (18:29 +0100)]
cleanup
Andreas Müller [Thu, 4 Feb 2021 17:29:06 +0000 (18:29 +0100)]
fix #5095 unignore tests (remaining 2 tests in AssemblerTest are caused by changes in #6324)
Andreas Müller [Thu, 4 Feb 2021 17:26:15 +0000 (18:26 +0100)]
ref #5095 avoid running dozer tests when dozer.sourceforge.net is not available
Andreas Müller [Thu, 4 Feb 2021 17:22:33 +0000 (18:22 +0100)]
fixing incorrect test
Andreas Müller [Thu, 4 Feb 2021 17:21:49 +0000 (18:21 +0100)]
cleanup
Andreas Müller [Thu, 4 Feb 2021 16:56:34 +0000 (17:56 +0100)]
ref #5095 change dozer mapping from .dtd to .xsd
Andreas Müller [Thu, 4 Feb 2021 16:30:16 +0000 (17:30 +0100)]
cleanup
Andreas Müller [Thu, 4 Feb 2021 15:53:51 +0000 (16:53 +0100)]
ref #9114 fix dozer mapping by reverting URI mappings to java.net.URI
Andreas Müller [Thu, 4 Feb 2021 15:51:33 +0000 (16:51 +0100)]
cleanup
Katja Luther [Thu, 4 Feb 2021 09:12:51 +0000 (10:12 +0100)]
missed to add the new enum
Katja Luther [Thu, 4 Feb 2021 08:56:48 +0000 (09:56 +0100)]
revert setting publish in clone
Katja Luther [Thu, 4 Feb 2021 08:39:04 +0000 (09:39 +0100)]
add tests for different sec handling
Katja Luther [Thu, 4 Feb 2021 08:10:52 +0000 (09:10 +0100)]
publish also should be cloned in TaxonBase.clone
Katja Luther [Thu, 4 Feb 2021 07:27:20 +0000 (08:27 +0100)]
fix publish handling for synonyms and misapplied names and add sec handling for switch syn to accepted
Andreas Müller [Wed, 3 Feb 2021 12:13:37 +0000 (13:13 +0100)]
fix #9451 add ClassificationDefaultCacheStrategy
Andreas Müller [Wed, 3 Feb 2021 12:10:19 +0000 (13:10 +0100)]
ref #9443, ref #5575 tissue sample as DnaSample generation and initialization of DNA sample cache strategies
Andreas Müller [Wed, 3 Feb 2021 12:02:32 +0000 (13:02 +0100)]
ref #5575 refactor initialization of cache strategy (initialize when needed, not in constructor)
Andreas Müller [Wed, 3 Feb 2021 09:54:02 +0000 (10:54 +0100)]
cleanup
Andreas Müller [Tue, 2 Feb 2021 23:36:07 +0000 (00:36 +0100)]
cleanup
Andreas Müller [Tue, 2 Feb 2021 21:05:08 +0000 (22:05 +0100)]
cleanup
Andreas Müller [Tue, 2 Feb 2021 10:02:14 +0000 (11:02 +0100)]
remove System.exit(-1) from CdmPersistentDataSource
Andreas Müller [Tue, 2 Feb 2021 10:01:23 +0000 (11:01 +0100)]
cleanup
Andreas Müller [Fri, 29 Jan 2021 23:13:23 +0000 (00:13 +0100)]
fix #9434 add pollen, leaf and trichomes to the PlantKindOfUnit.csv
Andreas Kohlbecker [Fri, 29 Jan 2021 10:21:15 +0000 (11:21 +0100)]
ref #9389 removing TODO comment as the situation is clarified now
Andreas Kohlbecker [Fri, 29 Jan 2021 10:05:20 +0000 (11:05 +0100)]
ref #9253 removing useless init strategy from within @Transactional method
Andreas Müller [Thu, 28 Jan 2021 22:33:55 +0000 (23:33 +0100)]
fix #9429 fix duplicated sec-detail in taxon cachestrategy
Andreas Müller [Thu, 28 Jan 2021 22:33:14 +0000 (23:33 +0100)]
cleanup
jenkins [Thu, 28 Jan 2021 12:43:22 +0000 (13:43 +0100)]
Updating develop poms back to pre merge state
jenkins [Thu, 28 Jan 2021 12:43:21 +0000 (13:43 +0100)]
Merge branch 'master' into develop
jenkins [Thu, 28 Jan 2021 12:43:20 +0000 (13:43 +0100)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 28 Jan 2021 12:43:15 +0000 (13:43 +0100)]
Merge branch 'release/5.19.0'
jenkins [Thu, 28 Jan 2021 12:22:23 +0000 (13:22 +0100)]
updating poms for branch'release/5.19.0' with non-snapshot versions
jenkins [Thu, 28 Jan 2021 11:59:57 +0000 (12:59 +0100)]
updating poms for 5.20.0-SNAPSHOT development
Andreas Kohlbecker [Wed, 27 Jan 2021 12:02:04 +0000 (13:02 +0100)]
ref #9395 solving problem in derivation-dto-graph assembly (replaced field units)
Andreas Kohlbecker [Wed, 27 Jan 2021 10:20:45 +0000 (11:20 +0100)]
ref #7599 ref #9395 documenting requirements
Andreas Kohlbecker [Tue, 26 Jan 2021 13:15:36 +0000 (14:15 +0100)]
ref #9301 static helper method to find the nom. act of a registration
Andreas Kohlbecker [Tue, 26 Jan 2021 11:38:40 +0000 (12:38 +0100)]
ref #9395 simplifying findByGeneticAccessionNumber() as extra code has no imact on performance
Andreas Kohlbecker [Tue, 26 Jan 2021 11:34:06 +0000 (12:34 +0100)]
ref #9395 findByAccessionNumber() -> findByGeneticAccessionNumber(), preserving old method as deprecated
Andreas Müller [Tue, 26 Jan 2021 11:32:48 +0000 (12:32 +0100)]
cleanup
Andreas Kohlbecker [Tue, 26 Jan 2021 11:16:53 +0000 (12:16 +0100)]
ref #9395 fully implementing maxDepth for derivative assembly and fixing OccurrenceServiceImpl._findRootUnitDTO()
Andreas Müller [Tue, 26 Jan 2021 10:43:10 +0000 (11:43 +0100)]
cleanup
Andreas Müller [Tue, 26 Jan 2021 08:59:29 +0000 (09:59 +0100)]
ref #9360 preliminary exception for debugging NPE
Andreas Kohlbecker [Mon, 25 Jan 2021 18:49:59 +0000 (19:49 +0100)]
ref #9389 ref #9415 improving information assembly in derivation bouquet by recursion - adapting test
Andreas Kohlbecker [Mon, 25 Jan 2021 18:12:17 +0000 (19:12 +0100)]
ref #9389 ref #9415 improving information assembly in derivation bouquet by recursion, fixing multiple problems
Katja Luther [Mon, 25 Jan 2021 10:26:30 +0000 (11:26 +0100)]
avoid NotSerializableException for SourceDto
Andreas Müller [Fri, 22 Jan 2021 15:32:23 +0000 (16:32 +0100)]
cleanup
Andreas Müller [Fri, 22 Jan 2021 15:32:07 +0000 (16:32 +0100)]
ref #9365 update code for reuse taxon (change order for check name and check taxon and throw exceptions if not exists)
Andreas Müller [Fri, 22 Jan 2021 15:08:13 +0000 (16:08 +0100)]
cleanup
Andreas Müller [Fri, 22 Jan 2021 13:53:49 +0000 (14:53 +0100)]
make comparators of TaxonNodeXxxSortMode singletons
Andreas Müller [Fri, 22 Jan 2021 13:47:45 +0000 (14:47 +0100)]
cleanup
Andreas Müller [Fri, 22 Jan 2021 12:52:54 +0000 (13:52 +0100)]
ref #9354 unify TaxonNodeDao.listChildrenOf(...) methods (fix test)
Andreas Müller [Fri, 22 Jan 2021 12:26:17 +0000 (13:26 +0100)]
ref #9354 unify TaxonNodeDao.listChildrenOf(...) methods
Andreas Müller [Fri, 22 Jan 2021 12:24:22 +0000 (13:24 +0100)]
move TaxonNodeSortMode to model.compare
Andreas Müller [Fri, 22 Jan 2021 12:23:16 +0000 (13:23 +0100)]
cleanup
Andreas Kohlbecker [Fri, 22 Jan 2021 10:34:47 +0000 (11:34 +0100)]
ref #9276 renaming DerivationTreeSummaryDTO fields in SpecimenOrObservationBaseDTO
Andreas Kohlbecker [Fri, 22 Jan 2021 10:32:44 +0000 (11:32 +0100)]
ref #9276 documenting DerivateDataDTO and renaming to DerivationTreeSummaryDTO
Andreas Müller [Fri, 22 Jan 2021 10:33:42 +0000 (11:33 +0100)]
try to fix TaxoNodeByNameComparator issue in application context files.
Andreas Müller [Fri, 22 Jan 2021 10:16:54 +0000 (11:16 +0100)]
fix compile error and rename TaxonNodeNaturalComparator
Andreas Müller [Fri, 22 Jan 2021 10:07:21 +0000 (11:07 +0100)]
moving further Comparators to model.compare
Andreas Müller [Fri, 22 Jan 2021 09:43:39 +0000 (10:43 +0100)]
cleanup
Andreas Müller [Fri, 22 Jan 2021 09:43:19 +0000 (10:43 +0100)]
ref #9354 fix NPE in TaxonNodeByRankAndNameComparator
Andreas Kohlbecker [Fri, 22 Jan 2021 09:47:46 +0000 (10:47 +0100)]
ref #9395 adapting services and web-services to return all root units
Andreas Müller [Fri, 22 Jan 2021 09:02:18 +0000 (10:02 +0100)]
move some comparators to model.compare package, add subpackages to model.compare and some cleanup
Andreas Müller [Fri, 22 Jan 2021 07:39:31 +0000 (08:39 +0100)]
implement Comparator contract for TypedEntityComparator.java correctly
Andreas Müller [Thu, 21 Jan 2021 18:41:32 +0000 (19:41 +0100)]
fix compile error
Andreas Müller [Thu, 21 Jan 2021 18:26:06 +0000 (19:26 +0100)]
improve generics for AgentService.getUuidAndAbbrevTitleCache
Andreas Müller [Thu, 21 Jan 2021 18:25:25 +0000 (19:25 +0100)]
cleanup
Andreas Müller [Thu, 21 Jan 2021 18:23:26 +0000 (19:23 +0100)]
ref #9356 adapt TypeDesignationComparator to fix case when both type status are null ; and cleanup null compare part above
Andreas Müller [Thu, 21 Jan 2021 16:40:09 +0000 (17:40 +0100)]
cleanup and improve generics
Katja Luther [Thu, 21 Jan 2021 16:29:49 +0000 (17:29 +0100)]
fix delete taxon/name and merge createTaxon methods - continue
Andreas Müller [Thu, 21 Jan 2021 15:12:39 +0000 (16:12 +0100)]
cleanup
Andreas Müller [Thu, 21 Jan 2021 15:12:23 +0000 (16:12 +0100)]
ref #9142 code simplification
Andreas Kohlbecker [Thu, 21 Jan 2021 14:31:16 +0000 (15:31 +0100)]
ref #9301 extending init-strategy to include typeDesignation.source.*
Katja Luther [Thu, 21 Jan 2021 13:40:44 +0000 (14:40 +0100)]
merge the two create taxon methods
Katja Luther [Thu, 21 Jan 2021 13:39:27 +0000 (14:39 +0100)]
fix isDeletable for taxon with name used only once
Katja Luther [Wed, 20 Jan 2021 15:24:21 +0000 (16:24 +0100)]
ref 6308: result should be ok, if taxon can be deleted but not the name
Andreas Kohlbecker [Wed, 20 Jan 2021 14:12:51 +0000 (15:12 +0100)]
ref #7223 proper definition of IPersonalCommunication in ReferencePropertyDefinitions