cdmlib.git
2 months agoref #10273, ref #10446 add subsection and ipni ID to content export and doc for backb...
Andreas Müller [Thu, 2 May 2024 21:13:52 +0000 (23:13 +0200)]
ref #10273, ref #10446 add subsection and ipni ID to content export and doc for backbone export

2 months agoref #10446 add section and subsection to backbone export
Andreas Müller [Thu, 2 May 2024 21:02:03 +0000 (23:02 +0200)]
ref #10446 add section and subsection to backbone export

2 months agoref #10446 add IPNI ID
Andreas Müller [Thu, 2 May 2024 21:01:37 +0000 (23:01 +0200)]
ref #10446 add IPNI ID

3 months agocleanup
Andreas Müller [Tue, 30 Apr 2024 08:09:50 +0000 (10:09 +0200)]
cleanup

3 months agoref #10322 remove empty sources from singleSourced entities (cont.)
Andreas Müller [Tue, 30 Apr 2024 08:08:29 +0000 (10:08 +0200)]
ref #10322 remove empty sources from singleSourced entities (cont.)

3 months agoref #10322 remove empty sources from singleSourced entities
Andreas Müller [Mon, 29 Apr 2024 13:53:43 +0000 (15:53 +0200)]
ref #10322 remove empty sources from singleSourced entities

3 months agoref #10178: rank implementation
Belen Escobari [Mon, 29 Apr 2024 13:27:52 +0000 (15:27 +0200)]
ref #10178: rank implementation

3 months agoref #10322 fix name relations in invers direction
Andreas Müller [Fri, 26 Apr 2024 13:00:15 +0000 (15:00 +0200)]
ref #10322 fix name relations in invers direction

3 months agoref #10322 add code edition to name relation with test
Andreas Müller [Fri, 26 Apr 2024 12:44:24 +0000 (14:44 +0200)]
ref #10322 add code edition to name relation with test

3 months agoref #10322 javadoc on name relation annotations
Andreas Müller [Fri, 26 Apr 2024 12:15:47 +0000 (14:15 +0200)]
ref #10322 javadoc on name relation annotations

3 months agorefactor test data creation
Andreas Müller [Fri, 26 Apr 2024 12:15:15 +0000 (14:15 +0200)]
refactor test data creation

3 months agotemporariyl ignore OaiPmhViewTest as service is not available
Andreas Müller [Thu, 25 Apr 2024 19:12:16 +0000 (21:12 +0200)]
temporariyl ignore OaiPmhViewTest as service is not available

3 months agoref #10322 add related name annotations and some first tests for synonymy
Andreas Müller [Thu, 25 Apr 2024 18:07:04 +0000 (20:07 +0200)]
ref #10322 add related name annotations and some first tests for synonymy

3 months agoremove temporary ignore
Andreas Müller [Thu, 25 Apr 2024 17:13:18 +0000 (19:13 +0200)]
remove temporary ignore

3 months agotemporariyl ignore OaiPmhViewTest as service is not available
Andreas Müller [Thu, 25 Apr 2024 10:41:25 +0000 (12:41 +0200)]
temporariyl ignore OaiPmhViewTest as service is not available

3 months agoref #7696, ref #461, ref #9940 fix icon handling
Andreas Müller [Thu, 25 Apr 2024 09:19:04 +0000 (11:19 +0200)]
ref #7696,  ref #461, ref #9940 fix icon handling

3 months agoref #10496 change DOI to https (cont.)
Andreas Müller [Thu, 25 Apr 2024 09:11:45 +0000 (11:11 +0200)]
ref #10496 change DOI to https (cont.)

3 months agoref #7696, ref #461, ref #9940 add link to type specimen tagged text
Andreas Müller [Thu, 25 Apr 2024 09:02:45 +0000 (11:02 +0200)]
ref #7696,  ref #461, ref #9940 add link to type specimen tagged text

3 months agocleanup
Andreas Müller [Wed, 24 Apr 2024 19:50:42 +0000 (21:50 +0200)]
cleanup

3 months agoref #10496 change DOI to https
Andreas Müller [Wed, 24 Apr 2024 19:48:41 +0000 (21:48 +0200)]
ref #10496 change DOI to https

3 months agoref #7696, ref #461, ref #9940 refactor TypeDesignationSet related classes, also...
Andreas Müller [Wed, 24 Apr 2024 11:01:34 +0000 (13:01 +0200)]
ref #7696,  ref #461, ref #9940 refactor TypeDesignationSet related classes, also handle "not designated" and TextualTypeDesignations, also start handling URI links, not fully ready yet

3 months agocleanup
Andreas Müller [Tue, 23 Apr 2024 10:15:35 +0000 (12:15 +0200)]
cleanup

3 months agoref #10178: fix updated controller
Belen Escobari [Tue, 23 Apr 2024 20:49:30 +0000 (22:49 +0200)]
ref #10178: fix updated controller

3 months agoref #10178: updated controller
Belen Escobari [Tue, 23 Apr 2024 20:37:40 +0000 (22:37 +0200)]
ref #10178: updated controller

3 months agoref #10178: fix bug in infraspecific matching names
Belen Escobari [Tue, 23 Apr 2024 19:13:52 +0000 (21:13 +0200)]
ref #10178: fix bug in infraspecific matching names

3 months agoref #10178 implement search with distance and result shaping
Belen Escobari [Tue, 23 Apr 2024 11:31:02 +0000 (13:31 +0200)]
ref #10178 implement search with distance and result shaping

3 months agoref #10322: allow untyped annotations - continue
Katja [Tue, 23 Apr 2024 09:58:26 +0000 (11:58 +0200)]
ref #10322: allow untyped annotations - continue

3 months agoref #10322: allow untyped annotations
Katja [Tue, 23 Apr 2024 09:49:39 +0000 (11:49 +0200)]
ref #10322: allow untyped annotations

3 months agoref #7696, ref #461, ref #9940 rename TypeDesignationSetFormatter to TypeDesingation...
Andreas Müller [Mon, 22 Apr 2024 16:50:25 +0000 (18:50 +0200)]
ref #7696,  ref #461, ref #9940 rename TypeDesignationSetFormatter to TypeDesingationSetContainerFormatter in cdmlib (cont.)

3 months agosome renaming
Andreas Müller [Mon, 22 Apr 2024 14:57:11 +0000 (16:57 +0200)]
some renaming

3 months agoref #7696, ref #461, ref #9940 rename TypeDesignationSetFormatter to TypeDesingation...
Andreas Müller [Mon, 22 Apr 2024 14:45:21 +0000 (16:45 +0200)]
ref #7696,  ref #461, ref #9940 rename TypeDesignationSetFormatter to TypeDesingationSetContainerFormatter in cdmlib

3 months agocleanup
Andreas Müller [Mon, 22 Apr 2024 13:06:51 +0000 (15:06 +0200)]
cleanup

3 months agocleanup
Andreas Müller [Fri, 19 Apr 2024 10:47:48 +0000 (12:47 +0200)]
cleanup

3 months agoref #10494: don't use taxon node objects for creating taxonNodeDto
Katja [Mon, 22 Apr 2024 10:51:44 +0000 (12:51 +0200)]
ref #10494: don't use taxon node objects for creating taxonNodeDto

3 months agocleanup
Andreas Müller [Fri, 19 Apr 2024 09:23:18 +0000 (11:23 +0200)]
cleanup

3 months agoref #10322 remove separator if it is whitespace only
Andreas Müller [Fri, 19 Apr 2024 09:02:13 +0000 (11:02 +0200)]
ref #10322 remove separator if it is whitespace only

3 months agocleanup
Andreas Müller [Thu, 18 Apr 2024 16:30:33 +0000 (18:30 +0200)]
cleanup

3 months agoref #10322 improve annotation type handling
Andreas Müller [Thu, 18 Apr 2024 16:30:20 +0000 (18:30 +0200)]
ref #10322 improve annotation type handling

3 months agocleanup
Andreas Müller [Thu, 18 Apr 2024 09:29:55 +0000 (11:29 +0200)]
cleanup

3 months agoref #10322 handle annotation type filter correctly
Andreas Müller [Thu, 18 Apr 2024 09:21:16 +0000 (11:21 +0200)]
ref #10322 handle annotation type filter correctly

3 months agoref #10322 remove "-" for empty common name language
Andreas Müller [Thu, 18 Apr 2024 08:48:45 +0000 (10:48 +0200)]
ref #10322 remove "-" for empty common name language

3 months agoref #10322 handle annotationTypes
Andreas Müller [Wed, 17 Apr 2024 15:40:21 +0000 (17:40 +0200)]
ref #10322 handle annotationTypes

3 months agoref #10322 add nomenclatural status to taxon/name dto
Andreas Müller [Wed, 17 Apr 2024 15:27:59 +0000 (17:27 +0200)]
ref #10322 add nomenclatural status to taxon/name dto

3 months agoref #10322 add annotation types and marker types to the configurator and handle omit...
Andreas Müller [Tue, 16 Apr 2024 15:15:56 +0000 (17:15 +0200)]
ref #10322 add annotation types and marker types to the configurator and handle omit levels correctly

3 months agoref #10322 add annotation types and marker types to the ws parameters (cont.)
Andreas Müller [Tue, 16 Apr 2024 13:07:34 +0000 (15:07 +0200)]
ref #10322 add annotation types and marker types to the ws parameters (cont.)

3 months agoref #10322, ref #9524 use UUIDs for omit levels (cont.)
Andreas Müller [Tue, 16 Apr 2024 13:07:13 +0000 (15:07 +0200)]
ref #10322, ref #9524 use UUIDs for omit levels (cont.)

3 months agoref #10322, ref #9524 use UUIDs for omit levels
Andreas Müller [Tue, 16 Apr 2024 12:52:26 +0000 (14:52 +0200)]
ref #10322, ref #9524 use UUIDs for omit levels

3 months agoref #10322 add annotation types and marker types to the ws parameters
Andreas Müller [Tue, 16 Apr 2024 12:37:07 +0000 (14:37 +0200)]
ref #10322 add annotation types and marker types to the ws parameters

3 months agoref #10178 implement search with authors
Belen Escobari [Mon, 15 Apr 2024 15:05:49 +0000 (17:05 +0200)]
ref #10178 implement search with authors

3 months agoref #10492
Andreas Müller [Mon, 15 Apr 2024 12:11:02 +0000 (14:11 +0200)]
ref #10492

3 months agoref #10322 update facts dto loader
Andreas Müller [Fri, 12 Apr 2024 14:26:17 +0000 (16:26 +0200)]
ref #10322 update facts dto loader

3 months agoref #10322 fix media handling for facts
Andreas Müller [Fri, 12 Apr 2024 13:44:45 +0000 (15:44 +0200)]
ref #10322 fix media handling for facts

3 months agoref #10322 fix test
Andreas Müller [Fri, 12 Apr 2024 12:43:48 +0000 (14:43 +0200)]
ref #10322 fix test

3 months agoref #10322 add isInvalid attribute to names
Andreas Müller [Fri, 12 Apr 2024 12:32:09 +0000 (14:32 +0200)]
ref #10322 add isInvalid attribute to names

3 months agomake MediaDtoLoader not static
Andreas Müller [Fri, 12 Apr 2024 11:30:35 +0000 (13:30 +0200)]
make MediaDtoLoader not static

3 months agojavadoc
Andreas Müller [Fri, 12 Apr 2024 10:53:35 +0000 (12:53 +0200)]
javadoc

3 months agoref #10322 fix synonym ordering
Andreas Müller [Fri, 12 Apr 2024 10:47:41 +0000 (12:47 +0200)]
ref #10322 fix synonym ordering

3 months agoref #10322 add second ind. ass. and tax. interaction and add first cat. data and...
Andreas Müller [Fri, 12 Apr 2024 10:47:01 +0000 (12:47 +0200)]
ref #10322 add second ind. ass. and tax. interaction and add first cat. data and quant. data

3 months agoref #10322 add CondensedDistribution test for TaxonPageDtoLoaderTest
Andreas Müller [Fri, 12 Apr 2024 08:36:14 +0000 (10:36 +0200)]
ref #10322 add CondensedDistribution test for TaxonPageDtoLoaderTest

3 months agoref #10322 fix CCE in fact comparison
Andreas Müller [Fri, 12 Apr 2024 08:34:16 +0000 (10:34 +0200)]
ref #10322 fix CCE in fact comparison

3 months agocleanup
Andreas Müller [Thu, 11 Apr 2024 18:25:00 +0000 (20:25 +0200)]
cleanup

3 months agoref #10322 add tests for temporal data, individualsAssociations and taxonInteractions
Andreas Müller [Thu, 11 Apr 2024 18:21:37 +0000 (20:21 +0200)]
ref #10322 add tests for temporal data, individualsAssociations and taxonInteractions

3 months agoref #10322 fix test
Andreas Müller [Thu, 11 Apr 2024 16:49:27 +0000 (18:49 +0200)]
ref #10322 fix test

3 months agocleanup
Andreas Müller [Thu, 11 Apr 2024 16:06:00 +0000 (18:06 +0200)]
cleanup

3 months agoref #10322 handle fact media
Andreas Müller [Thu, 11 Apr 2024 14:28:32 +0000 (16:28 +0200)]
ref #10322 handle fact media

3 months agoref #10322 load CommonTaxonName as DTO, support plural for features, base class for...
Andreas Müller [Thu, 11 Apr 2024 13:37:21 +0000 (15:37 +0200)]
ref #10322 load CommonTaxonName as DTO, support plural for features, base class for fact loaders

3 months agoref #10322 load TextData as DTO and cleanup
Andreas Müller [Thu, 11 Apr 2024 11:36:10 +0000 (13:36 +0200)]
ref #10322 load TextData as DTO and cleanup

3 months agoref #9524, ref #10322 some renaming and cleanup and prepared support for marker loadi...
Andreas Müller [Thu, 11 Apr 2024 08:30:41 +0000 (10:30 +0200)]
ref #9524, ref #10322 some renaming and cleanup and prepared support for marker loading (continue)

3 months agoref #9524, ref #10322 some renaming and cleanup and prepared support for marker loading
Andreas Müller [Thu, 11 Apr 2024 08:22:20 +0000 (10:22 +0200)]
ref #9524, ref #10322 some renaming and cleanup and prepared support for marker loading

3 months agoref #9524, ref #10322 improve non-model objects loading (not yet ready)
Andreas Müller [Wed, 10 Apr 2024 20:52:16 +0000 (22:52 +0200)]
ref #9524, ref #10322 improve non-model objects loading (not yet ready)

3 months agoref #10322 add year to name relationship dto (cont.)
Andreas Müller [Wed, 10 Apr 2024 13:09:37 +0000 (15:09 +0200)]
ref #10322 add year to name relationship dto (cont.)

3 months agocleanup
Andreas Müller [Wed, 10 Apr 2024 12:39:26 +0000 (14:39 +0200)]
cleanup

3 months agoref #10322 adapt public source types
Andreas Müller [Wed, 10 Apr 2024 12:38:50 +0000 (14:38 +0200)]
ref #10322 adapt public source types

3 months agoref #10322 add year to name relationship dto
Andreas Müller [Wed, 10 Apr 2024 11:14:34 +0000 (13:14 +0200)]
ref #10322 add year to name relationship dto

3 months agocleanup
Andreas Müller [Wed, 10 Apr 2024 10:48:18 +0000 (12:48 +0200)]
cleanup

3 months agoref #10322 add sort order for default term tree
Andreas Müller [Wed, 10 Apr 2024 10:47:44 +0000 (12:47 +0200)]
ref #10322 add sort order for default term tree

3 months agoref #10322 add sortIndex for ordering facts and order by id if it does not exist
Andreas Müller [Wed, 10 Apr 2024 10:13:29 +0000 (12:13 +0200)]
ref #10322 add sortIndex for ordering facts and order by id if it does not exist

3 months agocleanup
Andreas Müller [Wed, 10 Apr 2024 07:24:10 +0000 (09:24 +0200)]
cleanup

3 months agocleanup
Andreas Müller [Wed, 10 Apr 2024 07:12:45 +0000 (09:12 +0200)]
cleanup

3 months agoref #10178 remove NameMatchingBeanProcessor
Andreas Müller [Wed, 10 Apr 2024 07:12:32 +0000 (09:12 +0200)]
ref #10178 remove NameMatchingBeanProcessor

3 months agoref #10178 infraspecific names not returned when searching for a species
Belen Escobari [Tue, 9 Apr 2024 15:19:58 +0000 (17:19 +0200)]
ref #10178 infraspecific names not returned when searching for a species

3 months agoadapt gbifJson parser
Katja [Fri, 5 Apr 2024 15:32:06 +0000 (17:32 +0200)]
adapt gbifJson parser

3 months agoadapt tests
Katja [Fri, 5 Apr 2024 15:20:13 +0000 (17:20 +0200)]
adapt tests

3 months agoref #10322: use UUIDs for omit levels
Katja [Fri, 5 Apr 2024 13:31:19 +0000 (15:31 +0200)]
ref #10322: use UUIDs for omit levels

3 months agoRevert "ref #9610: MediaInfoFileReader should create inputStream only once"
Katja [Tue, 2 Apr 2024 11:29:26 +0000 (13:29 +0200)]
Revert "ref #9610: MediaInfoFileReader should create inputStream only once"

This reverts commit 76d156c3c8fd2dd3630370708b2ff839b6f3b32d.

3 months agoref #10178 extract adapter methods into own class
Andreas Müller [Wed, 3 Apr 2024 18:33:45 +0000 (20:33 +0200)]
ref #10178 extract adapter methods into own class

3 months agoref #10178 fix jsonConfigurations, introduce api data objects with adapter and cleanup
Andreas Müller [Wed, 3 Apr 2024 17:32:41 +0000 (19:32 +0200)]
ref #10178 fix jsonConfigurations, introduce api data objects with adapter and cleanup

3 months agoref #10178 fix IOOB in replaceGenderEnding
Andreas Müller [Wed, 3 Apr 2024 15:27:21 +0000 (17:27 +0200)]
ref #10178 fix IOOB in replaceGenderEnding

3 months agocleanup
Andreas Müller [Wed, 3 Apr 2024 15:26:23 +0000 (17:26 +0200)]
cleanup

3 months agocleanup
Andreas Müller [Wed, 3 Apr 2024 14:51:16 +0000 (16:51 +0200)]
cleanup

3 months agoref #10322 try to handle omitLevels same as fallbackAreaMarkerTypes
Andreas Müller [Wed, 3 Apr 2024 14:50:26 +0000 (16:50 +0200)]
ref #10322 try to handle omitLevels same as fallbackAreaMarkerTypes

3 months agoref #10178 fix equals for genusOrUninomialWithDistance
Andreas Müller [Wed, 3 Apr 2024 11:02:37 +0000 (13:02 +0200)]
ref #10178  fix equals for genusOrUninomialWithDistance

3 months agoref #10178 remove inline call for taxonNamePartsFromDb
Andreas Müller [Wed, 3 Apr 2024 10:37:08 +0000 (12:37 +0200)]
ref #10178  remove inline call for taxonNamePartsFromDb

3 months agoref #10178 adapt nameMatching controller path and request param
Andreas Müller [Wed, 3 Apr 2024 10:35:34 +0000 (12:35 +0200)]
ref #10178 adapt nameMatching controller path and request param

3 months agocleanup
Andreas Müller [Wed, 3 Apr 2024 10:33:41 +0000 (12:33 +0200)]
cleanup

3 months agoref #10322 make DistributionDtoLoader load annotations and use generic loading for...
Andreas Müller [Tue, 2 Apr 2024 17:27:36 +0000 (19:27 +0200)]
ref #10322 make DistributionDtoLoader load annotations and use generic loading for sources

3 months agoref #10322 handle features with subfeatures correctly
Andreas Müller [Tue, 2 Apr 2024 15:36:08 +0000 (17:36 +0200)]
ref #10322 handle features with subfeatures correctly

4 months agoref #461, ref 10322, ref #7695 do not handle >1 typified names as error in typeDesign...
Andreas Müller [Thu, 28 Mar 2024 21:58:10 +0000 (22:58 +0100)]
ref #461, ref 10322, ref #7695 do not handle >1 typified names as error in typeDesignationSetContainer

4 months agocleanup
Andreas Müller [Thu, 28 Mar 2024 21:55:19 +0000 (22:55 +0100)]
cleanup

4 months agoref #10273 adapt WfoContentExportTransformer
Andreas Müller [Thu, 28 Mar 2024 11:31:06 +0000 (12:31 +0100)]
ref #10273 adapt WfoContentExportTransformer