cdmlib.git
11 years agoTODO comment
Andreas Kohlbecker [Fri, 17 May 2013 09:25:00 +0000 (09:25 +0000)]
TODO comment

11 years agoremoving old lines of code
Andreas Kohlbecker [Fri, 17 May 2013 09:24:57 +0000 (09:24 +0000)]
removing old lines of code

11 years agolinks to some service end points form the index page
Andreas Kohlbecker [Fri, 17 May 2013 09:24:52 +0000 (09:24 +0000)]
links to some service end points form the index page

11 years agojava doc
Andreas Müller [Thu, 16 May 2013 15:01:54 +0000 (15:01 +0000)]
java doc

11 years agoJava doc
Andreas Müller [Thu, 16 May 2013 14:59:21 +0000 (14:59 +0000)]
Java doc

11 years agoxsl transformation now outputs a human readable mediawiki code
s.buers [Tue, 14 May 2013 16:25:07 +0000 (16:25 +0000)]
xsl transformation now outputs a human readable mediawiki code

11 years agofixing #2569 (cdm-server log should include instance names)
Andreas Kohlbecker [Tue, 14 May 2013 16:05:06 +0000 (16:05 +0000)]
fixing #2569 (cdm-server log should include instance names)

11 years agoorganizing and documenting web application context attributes
Andreas Kohlbecker [Tue, 14 May 2013 16:04:55 +0000 (16:04 +0000)]
organizing and documenting web application context attributes

11 years agoi created a template that outputs a mediawiki comment newline
s.buers [Tue, 14 May 2013 09:30:57 +0000 (09:30 +0000)]
i created a template that outputs a mediawiki comment newline

11 years agoremove commented code
Andreas Müller [Mon, 13 May 2013 18:05:09 +0000 (18:05 +0000)]
remove commented code

11 years agovan and von authors (#3373)
Andreas Müller [Mon, 13 May 2013 16:42:24 +0000 (16:42 +0000)]
van and von authors (#3373)

11 years agominor
Andreas Müller [Mon, 13 May 2013 16:23:52 +0000 (16:23 +0000)]
minor

11 years agominor
Andreas Müller [Mon, 13 May 2013 16:21:25 +0000 (16:21 +0000)]
minor

11 years agominor
Andreas Müller [Mon, 13 May 2013 16:19:15 +0000 (16:19 +0000)]
minor

11 years agofixing bug in filterDistributions()
Andreas Kohlbecker [Fri, 10 May 2013 12:17:48 +0000 (12:17 +0000)]
fixing bug in filterDistributions()

11 years agousing uuid instead of id as key - fixes broken test
Andreas Kohlbecker [Wed, 8 May 2013 14:40:39 +0000 (14:40 +0000)]
using uuid instead of id as key - fixes broken test

11 years agofixed the parent link in taxotree to internal
s.buers [Wed, 8 May 2013 13:59:09 +0000 (13:59 +0000)]
fixed the parent link in taxotree to internal

11 years agofiltering of distributions for publication fixed ()
Andreas Kohlbecker [Wed, 8 May 2013 11:35:55 +0000 (11:35 +0000)]
filtering of distributions for publication fixed ()

11 years agorenaming eclipse launchers
Andreas Kohlbecker [Wed, 8 May 2013 11:35:52 +0000 (11:35 +0000)]
renaming eclipse launchers

11 years agochanged wiki template names
s.buers [Wed, 8 May 2013 10:24:27 +0000 (10:24 +0000)]
changed wiki template names

11 years agoUpdated reference template
l.morris [Wed, 8 May 2013 10:18:57 +0000 (10:18 +0000)]
Updated reference template

11 years agoitalic and bold wiki templates are abandoned now, list in features are now delimited...
s.buers [Tue, 7 May 2013 14:09:41 +0000 (14:09 +0000)]
italic and bold wiki templates are abandoned now, list in features are now delimited correctly

11 years agopages are created internal now
s.buers [Tue, 7 May 2013 09:11:05 +0000 (09:11 +0000)]
pages are created internal now

11 years agofixing stack overflow due to incorrect usage of freetext sessions
Andreas Kohlbecker [Tue, 7 May 2013 09:02:46 +0000 (09:02 +0000)]
fixing stack overflow due to incorrect usage of freetext sessions

11 years agominor
Andreas Müller [Mon, 6 May 2013 21:41:50 +0000 (21:41 +0000)]
minor

11 years agochange behaviour for DistributionTree equals if no area levels exist.
Andreas Müller [Mon, 6 May 2013 20:04:02 +0000 (20:04 +0000)]
change behaviour for DistributionTree equals if no area levels exist.

11 years agofix NPE in Distribution Tree building (#3376)
Andreas Müller [Mon, 6 May 2013 19:48:33 +0000 (19:48 +0000)]
fix NPE in Distribution Tree building (#3376)

11 years agominor
Andreas Müller [Mon, 6 May 2013 18:43:21 +0000 (18:43 +0000)]
minor

11 years agominor
Andreas Müller [Mon, 6 May 2013 18:42:19 +0000 (18:42 +0000)]
minor

11 years agoreducing batch size, reducing max memory consumption, batch processes now running...
Andreas Kohlbecker [Mon, 6 May 2013 16:11:34 +0000 (16:11 +0000)]
reducing batch size, reducing max memory consumption, batch processes now running with lower priority (=3)

11 years agoalways updating priorities in transmission engine (avoids errors due to missing prior...
Andreas Kohlbecker [Mon, 6 May 2013 16:11:33 +0000 (16:11 +0000)]
always updating priorities in transmission engine (avoids errors due to missing priorities)

11 years agojava doc added
Andreas Kohlbecker [Mon, 6 May 2013 16:11:32 +0000 (16:11 +0000)]
java doc added

11 years agobetter error reporting
Andreas Kohlbecker [Mon, 6 May 2013 15:35:57 +0000 (15:35 +0000)]
better error reporting

11 years agoremoving indetion after mediawiki import
s.buers [Mon, 6 May 2013 12:41:55 +0000 (12:41 +0000)]
removing indetion after mediawiki import

11 years agoit now works without automatic indention
s.buers [Mon, 6 May 2013 12:28:30 +0000 (12:28 +0000)]
it now works without automatic indention

11 years agoreverted batch size back to 100
Cherian Mathew [Fri, 3 May 2013 09:19:24 +0000 (09:19 +0000)]
reverted batch size back to 100

11 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Thu, 2 May 2013 12:20:06 +0000 (12:20 +0000)]
[maven-release-plugin] prepare for next development iteration

11 years ago[maven-release-plugin] prepare release cdmlib-parent-3.2.0
edit-jenkins [Thu, 2 May 2013 12:20:02 +0000 (12:20 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.2.0

11 years agocreated markup nomenclaturalImport and specimen import
Andreas Müller [Tue, 30 Apr 2013 23:05:30 +0000 (23:05 +0000)]
created markup nomenclaturalImport and specimen import

11 years agoupdates to the markup import
Andreas Müller [Tue, 30 Apr 2013 17:07:21 +0000 (17:07 +0000)]
updates to the markup import

11 years agochanged some template names
s.buers [Tue, 30 Apr 2013 15:49:47 +0000 (15:49 +0000)]
changed some template names

11 years agolatest markup updates
Andreas Müller [Tue, 30 Apr 2013 15:14:02 +0000 (15:14 +0000)]
latest markup updates

11 years agoremoved unused imports
Cherian Mathew [Tue, 30 Apr 2013 14:15:18 +0000 (14:15 +0000)]
removed unused imports

11 years agochanged all parameter names to lower case
s.buers [Tue, 30 Apr 2013 12:34:48 +0000 (12:34 +0000)]
changed all parameter names to lower case

11 years agocorrected examples
Cherian Mathew [Tue, 30 Apr 2013 12:26:33 +0000 (12:26 +0000)]
corrected examples

11 years agoNameCatalogueController : added endpoints for documentation
Cherian Mathew [Tue, 30 Apr 2013 11:22:57 +0000 (11:22 +0000)]
NameCatalogueController : added endpoints for documentation
name-catalogue-accepted.apt : added type parameter to doc

11 years agoTransmissionEngineDistribution separating byArea and byRank aggregation - correcting...
Andreas Kohlbecker [Tue, 30 Apr 2013 10:02:42 +0000 (10:02 +0000)]
TransmissionEngineDistribution separating byArea and byRank aggregation - correcting progressmonitor work ticks

11 years agoTransmissionEngineDistribution separating byArea and byRank aggregation
Andreas Kohlbecker [Tue, 30 Apr 2013 09:58:50 +0000 (09:58 +0000)]
TransmissionEngineDistribution separating byArea and byRank aggregation

11 years agoremoving test code
Andreas Kohlbecker [Tue, 30 Apr 2013 09:58:43 +0000 (09:58 +0000)]
removing test code

11 years agocorrected utl to new endpoints
Cherian Mathew [Tue, 30 Apr 2013 09:27:27 +0000 (09:27 +0000)]
corrected utl to new endpoints

11 years agoMarkup import updates
Andreas Müller [Mon, 29 Apr 2013 23:08:59 +0000 (23:08 +0000)]
Markup import updates

11 years agominor
Andreas Müller [Mon, 29 Apr 2013 21:45:55 +0000 (21:45 +0000)]
minor

11 years agofixed gallery problem
s.buers [Mon, 29 Apr 2013 09:38:23 +0000 (09:38 +0000)]
fixed gallery problem

11 years agothis file is imported in the multipage it provides some string parsing
s.buers [Mon, 29 Apr 2013 09:29:40 +0000 (09:29 +0000)]
this file is imported in the multipage it provides some string parsing
functions

11 years agoNew factory method for keyStatement
Andreas Müller [Sat, 27 Apr 2013 00:45:35 +0000 (00:45 +0000)]
New factory method for keyStatement

11 years agotoString() for KeyStatement
Andreas Müller [Sat, 27 Apr 2013 00:34:34 +0000 (00:34 +0000)]
toString() for KeyStatement

11 years agodocumentation on polytomous key + node
Andreas Müller [Sat, 27 Apr 2013 00:10:53 +0000 (00:10 +0000)]
documentation on polytomous key + node

11 years agoupdating documentation for PolytomousKeyNode
Andreas Müller [Fri, 26 Apr 2013 23:58:02 +0000 (23:58 +0000)]
updating documentation for PolytomousKeyNode

11 years agolucene search: fixing grouping problem and basic indexing of term hierachies
Andreas Kohlbecker [Fri, 26 Apr 2013 21:18:42 +0000 (21:18 +0000)]
lucene search: fixing grouping problem and basic indexing of term hierachies

11 years agoreenabling some lines of code
Andreas Kohlbecker [Fri, 26 Apr 2013 15:34:58 +0000 (15:34 +0000)]
reenabling some lines of code

11 years agofirst working implementation of the Occurrence freetext search with spatial search
Andreas Kohlbecker [Fri, 26 Apr 2013 15:34:55 +0000 (15:34 +0000)]
first working implementation of the Occurrence freetext search with spatial search

11 years agousing NumericField and spatial type for search field
Andreas Kohlbecker [Fri, 26 Apr 2013 15:29:08 +0000 (15:29 +0000)]
using NumericField and spatial type for search field

11 years agoname-catalogue-accepted : added apt doc for accepted name search endpoint
Cherian Mathew [Fri, 26 Apr 2013 15:20:14 +0000 (15:20 +0000)]
name-catalogue-accepted : added apt doc for accepted name search endpoint
name-catalogue-fuzzy : added apt doc for fuzzy name search endpoint
name-catalogue-taxon : updated apt doc with source and taxonomic scrutiny info
rest-api-name-catalogue : added links to newly created apt docs

11 years agoadded boundary check on accuracy
Cherian Mathew [Fri, 26 Apr 2013 15:18:09 +0000 (15:18 +0000)]
added boundary check on accuracy

11 years agoAdded template for creating Reference list from citation nodes and nomenclaturalRefer...
l.morris [Thu, 25 Apr 2013 16:23:46 +0000 (16:23 +0000)]
Added template for creating Reference list from citation nodes and nomenclaturalReference nodes.

11 years agoNameCatalogueController : added 'fuzzy' endpoint to perform fuzzy matching on names
Cherian Mathew [Thu, 25 Apr 2013 15:07:47 +0000 (15:07 +0000)]
NameCatalogueController : added 'fuzzy' endpoint to perform fuzzy matching on names
NameSearch : updated NameSearch dto to include similarity score

11 years agoadded NONVIRALNAME to enum for fuzzy search
Cherian Mathew [Thu, 25 Apr 2013 15:06:30 +0000 (15:06 +0000)]
added NONVIRALNAME to enum for fuzzy search

11 years agoINameService : added findByNameFuzzySearch method to search names by fuzzy matching
Cherian Mathew [Thu, 25 Apr 2013 15:05:29 +0000 (15:05 +0000)]
INameService : added findByNameFuzzySearch method to search names by fuzzy matching
NameServiceImpl : implemented findByNameFuzzySearch and helper methods
LuceneSearch : added new simple (TopDocs based) executeSearch method
ISearchResultBuilder : added createResultSet method for generating a result set for TopDocs
SearchResultBuilder : implmented createResultSet method

11 years agoAdded 'redict' endpoint to recreate dictionaries
Cherian Mathew [Thu, 25 Apr 2013 14:54:25 +0000 (14:54 +0000)]
Added 'redict' endpoint to recreate dictionaries

11 years agoAdded Creation of dictionaries within the mass indexer
Cherian Mathew [Thu, 25 Apr 2013 14:53:48 +0000 (14:53 +0000)]
Added Creation of dictionaries within the mass indexer

11 years agominor
Andreas Kohlbecker [Thu, 25 Apr 2013 10:18:49 +0000 (10:18 +0000)]
minor

11 years agomake sessionFactory private
Andreas Müller [Thu, 25 Apr 2013 00:07:11 +0000 (00:07 +0000)]
make sessionFactory private

11 years agominor
Andreas Müller [Thu, 25 Apr 2013 00:04:40 +0000 (00:04 +0000)]
minor

11 years agominor
Andreas Müller [Wed, 24 Apr 2013 23:28:28 +0000 (23:28 +0000)]
minor

11 years agoalso preferring computed distributions in getOrderedDistributions()
Andreas Kohlbecker [Wed, 24 Apr 2013 15:56:49 +0000 (15:56 +0000)]
also preferring computed distributions in getOrderedDistributions()

11 years agofixed the 'italic problem
s.buers [Wed, 24 Apr 2013 14:45:19 +0000 (14:45 +0000)]
fixed the 'italic problem

11 years agoupdate ReferenceFactory method
Andreas Müller [Wed, 24 Apr 2013 13:39:44 +0000 (13:39 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Wed, 24 Apr 2013 13:29:53 +0000 (13:29 +0000)]
update ReferenceFactory method

11 years agominor
Andreas Müller [Wed, 24 Apr 2013 12:40:24 +0000 (12:40 +0000)]
minor

11 years agoremove imports
Andreas Müller [Wed, 24 Apr 2013 12:38:13 +0000 (12:38 +0000)]
remove imports

11 years agogallery works with gallery parser function, but there could be some improvements...
s.buers [Wed, 24 Apr 2013 11:43:51 +0000 (11:43 +0000)]
gallery works with gallery parser function, but there could be some improvements, also i found the replacement of the italic tag seems not to work proper

11 years agoavoid duplicates in derived unit media list
Andreas Müller [Wed, 24 Apr 2013 11:42:26 +0000 (11:42 +0000)]
avoid duplicates in derived unit media list

11 years agochange method name
Andreas Müller [Wed, 24 Apr 2013 11:40:00 +0000 (11:40 +0000)]
change method name

11 years agominor
Andreas Müller [Wed, 24 Apr 2013 11:37:27 +0000 (11:37 +0000)]
minor

11 years agoadding missing logger
Andreas Kohlbecker [Wed, 24 Apr 2013 10:30:17 +0000 (10:30 +0000)]
adding missing logger

11 years agoupdate ReferenceFactory method, remove instantiation
Andreas Müller [Tue, 23 Apr 2013 14:47:59 +0000 (14:47 +0000)]
update ReferenceFactory method, remove instantiation

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:44:56 +0000 (14:44 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:43:37 +0000 (14:43 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:42:18 +0000 (14:42 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:37:16 +0000 (14:37 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:36:46 +0000 (14:36 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:36:02 +0000 (14:36 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:34:29 +0000 (14:34 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:31:19 +0000 (14:31 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:27:53 +0000 (14:27 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:26:33 +0000 (14:26 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:25:18 +0000 (14:25 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:24:41 +0000 (14:24 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:23:51 +0000 (14:23 +0000)]
update ReferenceFactory method

11 years agoupdate ReferenceFactory method
Andreas Müller [Tue, 23 Apr 2013 14:23:15 +0000 (14:23 +0000)]
update ReferenceFactory method