Andreas Müller [Mon, 6 Feb 2012 11:53:01 +0000 (11:53 +0000)]
remove imports
Andreas Müller [Mon, 6 Feb 2012 11:49:15 +0000 (11:49 +0000)]
javadoc
Andreas Müller [Thu, 2 Feb 2012 23:10:21 +0000 (23:10 +0000)]
minor
Andreas Müller [Thu, 2 Feb 2012 22:53:58 +0000 (22:53 +0000)]
minor
Andreas Müller [Thu, 2 Feb 2012 22:42:48 +0000 (22:42 +0000)]
bugfix for stateData.modifyingText (#2760)
Andreas Müller [Thu, 2 Feb 2012 15:48:22 +0000 (15:48 +0000)]
remove imports
Andreas Müller [Thu, 2 Feb 2012 13:41:46 +0000 (13:41 +0000)]
bugfix for status duplication in name parser (#2750)
l.morris [Wed, 1 Feb 2012 15:51:27 +0000 (15:51 +0000)]
Exposes a bug in the NonViralNameParser: Multiple parsing of names with nomenclatural status will duplicate the status
Katja Luther [Wed, 1 Feb 2012 13:02:42 +0000 (13:02 +0000)]
fixing again the search for misapplied names. adapting the tests
Katja Luther [Wed, 1 Feb 2012 10:49:43 +0000 (10:49 +0000)]
test cases commented
Katja Luther [Tue, 31 Jan 2012 10:38:40 +0000 (10:38 +0000)]
Katja Luther [Tue, 31 Jan 2012 09:06:16 +0000 (09:06 +0000)]
Ticket #2648
Andreas Kohlbecker [Thu, 26 Jan 2012 14:48:47 +0000 (14:48 +0000)]
ignoring test
Andreas Kohlbecker [Thu, 26 Jan 2012 11:08:47 +0000 (11:08 +0000)]
test modified to reproduce bug in #2648 (search for misapplied names implemented)
Andreas Müller [Wed, 25 Jan 2012 16:21:14 +0000 (16:21 +0000)]
minor
Andreas Müller [Wed, 25 Jan 2012 15:46:29 +0000 (15:46 +0000)]
some small improvements for PESI export
Andreas Müller [Wed, 25 Jan 2012 14:25:59 +0000 (14:25 +0000)]
one more generic
Andreas Müller [Wed, 25 Jan 2012 14:22:31 +0000 (14:22 +0000)]
one more generic
Andreas Müller [Wed, 25 Jan 2012 14:11:14 +0000 (14:11 +0000)]
minor
Andreas Müller [Wed, 25 Jan 2012 14:05:51 +0000 (14:05 +0000)]
bugfix for taxon name id mapping in PESI
Andreas Müller [Tue, 24 Jan 2012 17:23:16 +0000 (17:23 +0000)]
better debugging for method mapper
Andreas Müller [Tue, 24 Jan 2012 16:13:55 +0000 (16:13 +0000)]
bugfix for MA workaround
Andreas Müller [Tue, 24 Jan 2012 14:56:17 +0000 (14:56 +0000)]
dirty workaround bugfix for #2743
Katja Luther [Tue, 24 Jan 2012 12:33:30 +0000 (12:33 +0000)]
Katja Luther [Mon, 23 Jan 2012 10:50:43 +0000 (10:50 +0000)]
add a test for a search only for misapplied names
Katja Luther [Mon, 23 Jan 2012 10:46:56 +0000 (10:46 +0000)]
fix for #2648
Andreas Kohlbecker [Thu, 19 Jan 2012 14:21:49 +0000 (14:21 +0000)]
circumventing persisting problems in test
Andreas Müller [Thu, 19 Jan 2012 14:17:26 +0000 (14:17 +0000)]
add switch species group
Andreas Müller [Thu, 19 Jan 2012 14:17:02 +0000 (14:17 +0000)]
add switch species group
Andreas Kohlbecker [Thu, 19 Jan 2012 14:04:56 +0000 (14:04 +0000)]
test to reproduce bug in #2648 (search for misapplied names implemented)
Andreas Kohlbecker [Thu, 19 Jan 2012 12:59:08 +0000 (12:59 +0000)]
fixing bug in bugfix for #2648, also fixing tests
Andreas Kohlbecker [Thu, 19 Jan 2012 12:04:41 +0000 (12:04 +0000)]
fixing bug in #2648: search for misapplied names implemented
Katja Luther [Thu, 19 Jan 2012 11:07:54 +0000 (11:07 +0000)]
bugfix (#2648)
Andreas Kohlbecker [Thu, 19 Jan 2012 10:22:02 +0000 (10:22 +0000)]
test to reproduce bug in misapplied name search
Andreas Müller [Wed, 18 Jan 2012 17:57:51 +0000 (17:57 +0000)]
remove whitespace
Andreas Müller [Wed, 18 Jan 2012 14:20:04 +0000 (14:20 +0000)]
handling blank strings as null
Andreas Müller [Wed, 18 Jan 2012 12:18:15 +0000 (12:18 +0000)]
minor
Andreas Müller [Wed, 18 Jan 2012 12:17:27 +0000 (12:17 +0000)]
minor logging improvements
Andreas Müller [Wed, 18 Jan 2012 10:02:22 +0000 (10:02 +0000)]
minor logging improvement
Andreas Müller [Mon, 16 Jan 2012 15:17:22 +0000 (15:17 +0000)]
minor (logging)
Andreas Müller [Mon, 16 Jan 2012 15:15:04 +0000 (15:15 +0000)]
minor (logging)
n.hoffmann [Mon, 16 Jan 2012 10:50:40 +0000 (10:50 +0000)]
Andreas Kohlbecker [Fri, 13 Jan 2012 16:31:39 +0000 (16:31 +0000)]
launch configs updated to new runjettyrun version
Andreas Kohlbecker [Fri, 13 Jan 2012 16:27:29 +0000 (16:27 +0000)]
documentation
Andreas Kohlbecker [Fri, 13 Jan 2012 15:05:35 +0000 (15:05 +0000)]
fixing bug associated with getTaxaByCommonName(); benchmarking taxa by common name hql vs lucene
Andreas Müller [Fri, 13 Jan 2012 10:35:48 +0000 (10:35 +0000)]
exclude updated_when from TaxonName
Andreas Müller [Fri, 13 Jan 2012 09:48:13 +0000 (09:48 +0000)]
Object change mapper for PESI and empty epithet bugfix and empty hybrid formula bugfix
Andreas Kohlbecker [Thu, 12 Jan 2012 17:09:10 +0000 (17:09 +0000)]
hibernate fulltext search & refactoring getTaxaByName*() method headers
Andreas Müller [Thu, 12 Jan 2012 12:13:38 +0000 (12:13 +0000)]
move DbExportMappers to common.mapping.out
Andreas Müller [Thu, 12 Jan 2012 12:04:29 +0000 (12:04 +0000)]
refactor export mapping
Katja Luther [Thu, 12 Jan 2012 11:17:22 +0000 (11:17 +0000)]
countTaxaByName harmonized with find method (replace Class <? extends TaxonBase> parameter with boolean parameters for synonyms, taxa and misapplied names)
Andreas Müller [Thu, 12 Jan 2012 09:47:41 +0000 (09:47 +0000)]
bugfix compile error in SOurce
Andreas Müller [Wed, 11 Jan 2012 17:32:14 +0000 (17:32 +0000)]
minor
Andreas Müller [Wed, 11 Jan 2012 16:57:22 +0000 (16:57 +0000)]
more generic for export io classes
Andreas Müller [Wed, 11 Jan 2012 16:20:36 +0000 (16:20 +0000)]
some library updates for PESI export
Andreas Müller [Wed, 11 Jan 2012 16:19:56 +0000 (16:19 +0000)]
return type for getTaggedText
Andreas Müller [Wed, 11 Jan 2012 16:19:30 +0000 (16:19 +0000)]
convenience methods to TaggedText and TagEnum
Andreas Müller [Wed, 11 Jan 2012 14:53:51 +0000 (14:53 +0000)]
toString for TaggedText
Katja Luther [Wed, 11 Jan 2012 10:50:00 +0000 (10:50 +0000)]
changes for bugs and problems in search for misapplied names (#2648)
Andreas Müller [Wed, 11 Jan 2012 09:39:30 +0000 (09:39 +0000)]
use io application controler
Andreas Müller [Tue, 10 Jan 2012 14:06:24 +0000 (14:06 +0000)]
minor
Andreas Müller [Tue, 10 Jan 2012 13:36:37 +0000 (13:36 +0000)]
better logging for occurrences missing source number
l.morris [Tue, 10 Jan 2012 10:06:52 +0000 (10:06 +0000)]
Added MODIFIABLE to MarkerType and MarkerType.csv
Andreas Müller [Mon, 9 Jan 2012 17:38:55 +0000 (17:38 +0000)]
update erms import (e.g. lsid mapper)
Andreas Müller [Mon, 9 Jan 2012 17:37:21 +0000 (17:37 +0000)]
bugfix for ordered term import
Andreas Müller [Mon, 9 Jan 2012 12:22:22 +0000 (12:22 +0000)]
latest version of delete result
Andreas Müller [Mon, 9 Jan 2012 12:22:00 +0000 (12:22 +0000)]
base class for delete configurator
Andreas Müller [Mon, 9 Jan 2012 12:21:26 +0000 (12:21 +0000)]
new term delete implementation
Andreas Müller [Fri, 6 Jan 2012 16:33:07 +0000 (16:33 +0000)]
minor
Andreas Müller [Fri, 6 Jan 2012 16:32:43 +0000 (16:32 +0000)]
handling missing id case for object creation mapper
Andreas Müller [Fri, 6 Jan 2012 14:28:14 +0000 (14:28 +0000)]
improve error handling for SQException
Andreas Müller [Fri, 6 Jan 2012 14:27:25 +0000 (14:27 +0000)]
improve error handling in for no such method exception
Andreas Müller [Fri, 6 Jan 2012 14:26:27 +0000 (14:26 +0000)]
improve logging for errors in mapper (not yet finished)
Andreas Müller [Fri, 6 Jan 2012 13:52:23 +0000 (13:52 +0000)]
improve error message for exceptions in ResultSetPartitioner
Andreas Müller [Fri, 6 Jan 2012 13:50:14 +0000 (13:50 +0000)]
error handling send to logger in import mapper
Andreas Müller [Fri, 6 Jan 2012 13:29:49 +0000 (13:29 +0000)]
improved logging for ordered terms compare
Andreas Müller [Fri, 6 Jan 2012 11:56:12 +0000 (11:56 +0000)]
bugfix for common name import
Andreas Müller [Fri, 6 Jan 2012 11:00:22 +0000 (11:00 +0000)]
bugfix for webmarker import
Andreas Müller [Thu, 5 Jan 2012 23:21:45 +0000 (23:21 +0000)]
minor
Andreas Müller [Thu, 5 Jan 2012 23:19:47 +0000 (23:19 +0000)]
improve logging for OrderedTerm compare
Andreas Müller [Thu, 5 Jan 2012 23:18:50 +0000 (23:18 +0000)]
bugfixes for CommonNameImport and WebMarkerCategory import
Andreas Müller [Thu, 5 Jan 2012 16:11:09 +0000 (16:11 +0000)]
log missing occurrence source references in one set
Andreas Müller [Thu, 5 Jan 2012 15:53:19 +0000 (15:53 +0000)]
some improvements on taxon relation logging
Andreas Müller [Thu, 5 Jan 2012 15:52:28 +0000 (15:52 +0000)]
some logging improvements for common names
Andreas Müller [Thu, 5 Jan 2012 14:52:37 +0000 (14:52 +0000)]
minor
Andreas Müller [Thu, 5 Jan 2012 14:51:47 +0000 (14:51 +0000)]
change order of AuthorTeam filter calls (maybe this reduces deadlock probability)
Andreas Kohlbecker [Thu, 5 Jan 2012 13:50:02 +0000 (13:50 +0000)]
turning System.err into logger.debug
Andreas Kohlbecker [Thu, 5 Jan 2012 13:43:05 +0000 (13:43 +0000)]
webservice portion of #2648 (search for misapplied names implemented)
Andreas Müller [Thu, 5 Jan 2012 12:06:52 +0000 (12:06 +0000)]
Bugfix for filtered AuthorTeam import
Andreas Kohlbecker [Thu, 5 Jan 2012 10:51:05 +0000 (10:51 +0000)]
fixing aspectj compile time error
Andreas Kohlbecker [Thu, 5 Jan 2012 09:14:48 +0000 (09:14 +0000)]
pom forgotten - sorry
Andreas Müller [Thu, 5 Jan 2012 09:08:39 +0000 (09:08 +0000)]
bugfix for authorTeam filter
Andreas Müller [Wed, 4 Jan 2012 23:21:21 +0000 (23:21 +0000)]
add author and authorTeam Filter
Andreas Müller [Wed, 4 Jan 2012 22:49:13 +0000 (22:49 +0000)]
improve common name import
Andreas Müller [Wed, 4 Jan 2012 16:53:10 +0000 (16:53 +0000)]
add includeEmpty vocs (#2704)
Andreas Müller [Wed, 4 Jan 2012 12:57:25 +0000 (12:57 +0000)]
rename DeletionResult -> DeleteResult & improve TermDeletionConfigurator
Andreas Müller [Wed, 4 Jan 2012 09:22:49 +0000 (09:22 +0000)]
added deletion result class and term deletion configurator #2703 and others.
Andreas Müller [Tue, 3 Jan 2012 18:55:29 +0000 (18:55 +0000)]
implement getTermVocabulariesByTermClasses also for subclasses (#2704)
Andreas Müller [Mon, 2 Jan 2012 22:23:04 +0000 (22:23 +0000)]
added EM areas turkey and caucasia
Andreas Müller [Mon, 2 Jan 2012 22:09:31 +0000 (22:09 +0000)]
bugfix for occurrenceSource import filter