Andreas Kohlbecker [Tue, 12 May 2015 09:58:36 +0000 (11:58 +0200)]
fixing #4903 (SQLGrammarException exception in description/namedAreasInUse)
Andreas Kohlbecker [Tue, 12 May 2015 09:07:53 +0000 (11:07 +0200)]
adding forceSchemaUpdate to the cdmlib-remote-webapp launcher
Patric Plitzner [Tue, 12 May 2015 08:47:55 +0000 (08:47 +0000)]
- added config option to ignore already existing specimens during import
- for ggbn import already existing specimens are searched and attached if associated to the dna unit
- refactored AbcdReport to also display the unitId
Patric Plitzner [Tue, 12 May 2015 08:44:05 +0000 (08:44 +0000)]
- added significantIdentifer as search parameter to occurrenceService.findByTitle()
Patric Plitzner [Mon, 11 May 2015 12:03:43 +0000 (12:03 +0000)]
- added modifying text to factual data label #4883
Katja Luther [Mon, 11 May 2015 11:37:29 +0000 (11:37 +0000)]
make the taxonomic tree editable in natural order (see #3771), adding comparator
Katja Luther [Mon, 11 May 2015 10:16:00 +0000 (10:16 +0000)]
delete the embedded class UuidAndTitleCacheOfAcceptedTaxon
Andreas M��ller [Mon, 11 May 2015 10:06:11 +0000 (10:06 +0000)]
privates for uuidAndTitleCache
Patric Plitzner [Wed, 6 May 2015 16:26:48 +0000 (16:26 +0000)]
- added count to single reads in portal
Patric Plitzner [Wed, 6 May 2015 12:49:41 +0000 (12:49 +0000)]
- changed "derivate" to "derivatives"
Andreas M��ller [Tue, 5 May 2015 14:51:04 +0000 (14:51 +0000)]
change SupportedCategoricalEnumeration and RecommendedModifierEnumeration from OneToMany to ManyToMany #4843
Andreas M��ller [Tue, 5 May 2015 12:50:32 +0000 (12:50 +0000)]
implement datasource type inference for external datasources: #3910
Patric Plitzner [Tue, 5 May 2015 11:36:12 +0000 (11:36 +0000)]
- show primer information in specimen tab although no contig file specified
Cherian Mathew [Mon, 4 May 2015 14:58:01 +0000 (14:58 +0000)]
updated cdm-vaadin version to 3.5.2-SNAPSHOT
edit-jenkins [Mon, 4 May 2015 11:56:06 +0000 (11:56 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Mon, 4 May 2015 11:56:01 +0000 (11:56 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.5.1
Katja Luther [Mon, 4 May 2015 10:06:53 +0000 (10:06 +0000)]
Katja Luther [Mon, 4 May 2015 10:00:04 +0000 (10:00 +0000)]
Katja Luther [Mon, 4 May 2015 09:57:29 +0000 (09:57 +0000)]
Katja Luther [Mon, 4 May 2015 09:12:59 +0000 (09:12 +0000)]
Katja Luther [Mon, 4 May 2015 09:02:13 +0000 (09:02 +0000)]
Katja Luther [Mon, 4 May 2015 07:47:33 +0000 (07:47 +0000)]
Andreas M��ller [Thu, 30 Apr 2015 22:14:18 +0000 (22:14 +0000)]
minor
Andreas M��ller [Thu, 30 Apr 2015 22:12:59 +0000 (22:12 +0000)]
Implement bidirectionality for QuantitativeData-StatisticalMeasurementValue #4845
Andreas M��ller [Thu, 30 Apr 2015 22:10:09 +0000 (22:10 +0000)]
fix stateData removal #4840
Andreas M��ller [Thu, 30 Apr 2015 19:23:28 +0000 (19:23 +0000)]
add validation rule request for idInVocabulary #3379, #4245
Andreas M��ller [Thu, 30 Apr 2015 19:17:49 +0000 (19:17 +0000)]
minor
Alexander Oppermann [Thu, 30 Apr 2015 12:48:41 +0000 (12:48 +0000)]
Partial Fix of Ticket #4728
Andreas Kohlbecker [Thu, 30 Apr 2015 10:08:31 +0000 (12:08 +0200)]
solving problem in #4803 (Upgrade dbunit and easymock)
Andreas Kohlbecker [Thu, 30 Apr 2015 10:03:09 +0000 (12:03 +0200)]
ignore
Andreas Müller [Wed, 29 Apr 2015 15:37:46 +0000 (15:37 +0000)]
fix remove hybrid method (related to #2576)
Andreas Müller [Wed, 29 Apr 2015 15:26:28 +0000 (15:26 +0000)]
added not blank handling for potential notEmpty strings #4653
Andreas Müller [Wed, 29 Apr 2015 15:24:26 +0000 (15:24 +0000)]
added not blank handling for potential notEmpty strings #4653 , solving compilation issues
Alexander Oppermann [Wed, 29 Apr 2015 15:22:30 +0000 (15:22 +0000)]
Partial fix of Ticket #4728
Andreas Müller [Wed, 29 Apr 2015 15:18:12 +0000 (15:18 +0000)]
added not blank handling for potential notEmpty strings #4653
Andreas Müller [Wed, 29 Apr 2015 11:43:37 +0000 (11:43 +0000)]
minor
Andreas Müller [Wed, 29 Apr 2015 11:41:21 +0000 (11:41 +0000)]
fix move description element bug #4806
Andreas Müller [Wed, 29 Apr 2015 09:49:41 +0000 (09:49 +0000)]
minor
Andreas Müller [Mon, 27 Apr 2015 16:00:09 +0000 (16:00 +0000)]
fix XmlType.propOrder #4840
Andreas Müller [Mon, 27 Apr 2015 15:47:27 +0000 (15:47 +0000)]
implement bidirectionality on CategoricalData-StateData #4840
Andreas Müller [Mon, 27 Apr 2015 14:53:08 +0000 (14:53 +0000)]
fix relationship type for CategoricalData-StateData #3382
Cherian Mathew [Mon, 27 Apr 2015 14:22:56 +0000 (14:22 +0000)]
updating vaadin version
Andreas Müller [Fri, 24 Apr 2015 09:46:54 +0000 (09:46 +0000)]
Changed order of PresenceAbsence terms according to E+M ordering #3906
Andreas Müller [Fri, 24 Apr 2015 08:37:18 +0000 (08:37 +0000)]
Remove left join from listNamedAreasInUse #4820
Patric Plitzner [Fri, 24 Apr 2015 07:06:47 +0000 (07:06 +0000)]
- order character data by key name
Andreas Müller [Wed, 22 Apr 2015 13:40:17 +0000 (13:40 +0000)]
Capital letters for term types, related to #4553
Katja Luther [Wed, 22 Apr 2015 11:50:15 +0000 (11:50 +0000)]
Katja Luther [Wed, 22 Apr 2015 11:36:27 +0000 (11:36 +0000)]
Andreas Müller [Wed, 22 Apr 2015 08:51:49 +0000 (08:51 +0000)]
fix hybrid parsing with existing hybrid relationships on full reference parsing #2576
Andreas Müller [Tue, 21 Apr 2015 21:50:18 +0000 (21:50 +0000)]
fix parsing of hybrids as fullReferenceName #2576
Andreas Müller [Tue, 21 Apr 2015 18:00:29 +0000 (18:00 +0000)]
minor
Andreas Müller [Tue, 21 Apr 2015 17:54:18 +0000 (17:54 +0000)]
fix hybrid parsing with existing hybrid relationships #2576
Andreas Kohlbecker [Tue, 21 Apr 2015 14:41:41 +0000 (14:41 +0000)]
fixing #4752 (RL Webservice 9: CommonName Webservice)
Andreas Müller [Tue, 21 Apr 2015 14:34:48 +0000 (14:34 +0000)]
fixing infinite loop in HybridRelationship.compareTo #2576
Andreas Müller [Tue, 21 Apr 2015 14:27:57 +0000 (14:27 +0000)]
cleanup NonViralNameServer doc
Andreas Müller [Tue, 21 Apr 2015 14:26:31 +0000 (14:26 +0000)]
fix isSection #4556
Patric Plitzner [Tue, 21 Apr 2015 12:46:44 +0000 (12:46 +0000)]
- reverted sorting order of field units
Andreas Müller [Tue, 21 Apr 2015 12:20:09 +0000 (12:20 +0000)]
Add millimeter (mm) as new measurement unit
Patric Plitzner [Tue, 21 Apr 2015 05:14:35 +0000 (05:14 +0000)]
- split up DTO images in specimen scans and detail images
Andreas Müller [Sat, 18 Apr 2015 05:59:24 +0000 (05:59 +0000)]
fix term loading bug for originally empty vocabularies #4248
Andreas Müller [Fri, 17 Apr 2015 15:36:00 +0000 (15:36 +0000)]
cleanup AuthorityControllerTest
Andreas Müller [Fri, 17 Apr 2015 15:34:36 +0000 (15:34 +0000)]
cleanup LSIDAuthorityServiceImpl
Andreas Müller [Fri, 17 Apr 2015 14:16:18 +0000 (14:16 +0000)]
minor
Andreas Müller [Fri, 17 Apr 2015 13:41:50 +0000 (13:41 +0000)]
upgrade unitils 3.3->3.4.2 #4636
Andreas Müller [Fri, 17 Apr 2015 11:59:27 +0000 (11:59 +0000)]
additing titleCache to administrative area
Andreas Müller [Fri, 17 Apr 2015 10:59:42 +0000 (10:59 +0000)]
fix bug for wrong StringUtils used in PresenceAbsence term
Andreas Müller [Fri, 17 Apr 2015 10:30:34 +0000 (10:30 +0000)]
fix bug in TaxonNodeDaoHibernateImplTest.testSortindexForJavassist2
Andreas Müller [Fri, 17 Apr 2015 09:32:31 +0000 (09:32 +0000)]
revert easymock -> 3.1 because of IllegalArgumentException: Partial mocking doesn't make sense for interface
upgrade xmlunit 1.4 -> 1.6
#4636
Andreas Müller [Fri, 17 Apr 2015 09:02:31 +0000 (09:02 +0000)]
upgrade easymock 3.1 -> 3.3.1 #4636
Andreas Müller [Fri, 17 Apr 2015 08:47:52 +0000 (08:47 +0000)]
upgrade junit-benchmarks 0.5.0 -> 0.7.2 #4636
Andreas Müller [Fri, 17 Apr 2015 08:27:45 +0000 (08:27 +0000)]
upgrade junit 4.11 -> 4.12 #4636
Katja Luther [Thu, 16 Apr 2015 11:53:02 +0000 (11:53 +0000)]
adding first implementation for getting a csv file with all name informations
Andreas Kohlbecker [Wed, 15 Apr 2015 15:10:37 +0000 (15:10 +0000)]
removing sql tracing from DescriptionDaoImpl
Patric Plitzner [Wed, 15 Apr 2015 14:10:45 +0000 (14:10 +0000)]
- added image gallery to specimen details page
Andreas Müller [Wed, 15 Apr 2015 14:06:08 +0000 (14:06 +0000)]
fix Index out of range Exception, #3910
Andreas Kohlbecker [Wed, 15 Apr 2015 13:22:51 +0000 (13:22 +0000)]
inalizing implementing option to update the database scheme via cdmlib-remote, related to r19571
Andreas Kohlbecker [Wed, 15 Apr 2015 12:22:06 +0000 (12:22 +0000)]
fixing #4798 (NPE in DescriptionListController at descriptionElement/byTaxon?taxon={uuid})
Andreas Kohlbecker [Wed, 15 Apr 2015 10:06:37 +0000 (10:06 +0000)]
removing invalid link from swagger-ui
Andreas Kohlbecker [Wed, 15 Apr 2015 10:06:35 +0000 (10:06 +0000)]
whitespace
Katja Luther [Wed, 15 Apr 2015 09:45:54 +0000 (09:45 +0000)]
Katja Luther [Wed, 15 Apr 2015 09:45:04 +0000 (09:45 +0000)]
Katja Luther [Wed, 15 Apr 2015 09:17:01 +0000 (09:17 +0000)]
adapting the setters of attributes with @NullOrNotEmpty annotations #4653
Cherian Mathew [Wed, 15 Apr 2015 09:14:31 +0000 (09:14 +0000)]
fixed typo
Cherian Mathew [Wed, 15 Apr 2015 09:10:00 +0000 (09:10 +0000)]
corrected link to maven repo
Patric Plitzner [Tue, 14 Apr 2015 14:01:37 +0000 (14:01 +0000)]
- fixed parameter assignment with no effect
Patric Plitzner [Tue, 14 Apr 2015 13:17:59 +0000 (13:17 +0000)]
- added findOccurrences() and countOccurrences() to service layer
- added configurator for these methods
- optimized retrieval with HQL query
- made use of service method in DerivateSearchView
Patric Plitzner [Tue, 14 Apr 2015 12:59:38 +0000 (12:59 +0000)]
- fixed recursive method
Andreas Kohlbecker [Tue, 14 Apr 2015 12:55:00 +0000 (12:55 +0000)]
whitespace
Andreas Kohlbecker [Tue, 14 Apr 2015 12:54:58 +0000 (12:54 +0000)]
allowing to use the freetest search with empty query strings, so that only the additional search filters are taken into account
Andreas Kohlbecker [Tue, 14 Apr 2015 12:54:56 +0000 (12:54 +0000)]
order area terms DTOs by idInVocabulary
Andreas Kohlbecker [Tue, 14 Apr 2015 12:54:54 +0000 (12:54 +0000)]
fixing NPE in TaxonPortalController.doGetSubtreeMedia() for the request path taxon/{uuid}/subtree/media
Andreas Kohlbecker [Tue, 14 Apr 2015 12:54:48 +0000 (12:54 +0000)]
adding source folders
Katja Luther [Tue, 14 Apr 2015 12:08:27 +0000 (12:08 +0000)]
Katja Luther [Tue, 14 Apr 2015 11:59:15 +0000 (11:59 +0000)]
Katja Luther [Tue, 14 Apr 2015 11:55:42 +0000 (11:55 +0000)]
Katja Luther [Tue, 14 Apr 2015 11:48:35 +0000 (11:48 +0000)]
Katja Luther [Tue, 14 Apr 2015 11:23:34 +0000 (11:23 +0000)]
Katja Luther [Tue, 14 Apr 2015 07:48:18 +0000 (07:48 +0000)]
Katja Luther [Tue, 14 Apr 2015 07:25:59 +0000 (07:25 +0000)]
Patric Plitzner [Mon, 13 Apr 2015 15:01:12 +0000 (15:01 +0000)]
- reverted temporary changes for titleCache generation