cdmlib.git
4 years agoupdating poms for 5.15.0-SNAPSHOT development
jenkins [Wed, 8 Apr 2020 13:02:32 +0000 (15:02 +0200)]
updating poms for 5.15.0-SNAPSHOT development

4 years agoRevert "fix #8932 configuring swagger to support overloaded controller methods"
Andreas Kohlbecker [Wed, 8 Apr 2020 09:08:02 +0000 (11:08 +0200)]
Revert "fix #8932 configuring swagger to support overloaded controller methods"

This reverts commit c916a82aeea2d702daa12cd607f5bd5acc25a57f.

4 years agocleanup
Andreas Müller [Tue, 7 Apr 2020 16:41:00 +0000 (18:41 +0200)]
cleanup

4 years agocleanup
Andreas Müller [Tue, 7 Apr 2020 16:38:12 +0000 (18:38 +0200)]
cleanup

4 years agofix #8942: fix NPE for not existing language
Katja Luther [Mon, 6 Apr 2020 10:13:40 +0000 (12:13 +0200)]
fix #8942: fix NPE for not existing language

4 years agoref #8934 adapt Feature and Taxon for FoG status import
a.mueller [Sun, 5 Apr 2020 06:12:08 +0000 (08:12 +0200)]
ref  #8934 adapt Feature and Taxon for FoG status import

4 years agocleanup
a.mueller [Sun, 5 Apr 2020 06:00:17 +0000 (08:00 +0200)]
cleanup

4 years agoref #8725: add preferencePredicate for showIdInVoc in textfield
Katja Luther [Fri, 3 Apr 2020 10:31:10 +0000 (12:31 +0200)]
ref #8725: add preferencePredicate for showIdInVoc in textfield

4 years agofix #8932 configuring swagger to support overloaded controller methods
Andreas Kohlbecker [Fri, 3 Apr 2020 09:46:22 +0000 (11:46 +0200)]
fix #8932 configuring swagger to support overloaded controller methods

4 years agoref ref #8815 adding condition which was lost during conflict resolution
Andreas Kohlbecker [Fri, 3 Apr 2020 08:53:01 +0000 (10:53 +0200)]
ref ref #8815 adding condition which was lost during conflict resolution

4 years agoref #8815 reverting return types from UuidAndTitleCache to TaxonNodeDto
Andreas Kohlbecker [Thu, 2 Apr 2020 14:14:07 +0000 (16:14 +0200)]
ref #8815 reverting return types from UuidAndTitleCache to TaxonNodeDto

4 years agoRevert "ref #8815: add UuidAndTitleCache methods again in taxonnodeservice"
Andreas Kohlbecker [Thu, 2 Apr 2020 07:11:52 +0000 (09:11 +0200)]
Revert "ref #8815: add UuidAndTitleCache methods again in taxonnodeservice"

This reverts commit 47c1bab5d954d21e17653072c211a7ae53e53e97 + 75e3aef5f2a567e2833c03f13194b062a5d58947

Resolved Conflicts:
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImpl.java
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonNodeDao.java
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITaxonNodeService.java
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImpl.java
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonNodeDao.java
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITaxonNodeService.java

4 years agoref #6113 adding dependency to KML types
Andreas Kohlbecker [Thu, 2 Apr 2020 07:07:42 +0000 (09:07 +0200)]
ref #6113 adding dependency to KML types

4 years agocleanup
a.mueller [Thu, 2 Apr 2020 09:46:21 +0000 (11:46 +0200)]
cleanup

4 years agoref #8886 add Fungi to NonViralNameParserImpl
a.mueller [Thu, 2 Apr 2020 09:46:06 +0000 (11:46 +0200)]
ref #8886 add Fungi to NonViralNameParserImpl

4 years agoremove redundant factory code in User
a.mueller [Thu, 2 Apr 2020 09:39:29 +0000 (11:39 +0200)]
remove redundant factory code in User

4 years agofix #8428 avoiding NPE
Andreas Kohlbecker [Wed, 1 Apr 2020 09:14:20 +0000 (11:14 +0200)]
fix #8428 avoiding NPE

4 years agoref #8905: fix description handling in specimen imports
Katja Luther [Tue, 31 Mar 2020 06:42:20 +0000 (08:42 +0200)]
ref #8905: fix description handling in specimen imports

4 years agoref #8907 adapting method to SortableTaxonNodeQueryResult - adding test
Andreas Kohlbecker [Mon, 30 Mar 2020 14:21:17 +0000 (16:21 +0200)]
ref #8907 adapting method to SortableTaxonNodeQueryResult - adding test

4 years agoref #8907 adapting method to SortableTaxonNodeQueryResult and fixing NPE
Andreas Kohlbecker [Mon, 30 Mar 2020 14:06:36 +0000 (16:06 +0200)]
ref #8907 adapting method to SortableTaxonNodeQueryResult and fixing NPE

4 years agofix #8899 fixing 4 NPEs in ManifestController
Andreas Kohlbecker [Mon, 30 Mar 2020 11:26:50 +0000 (13:26 +0200)]
fix #8899 fixing 4 NPEs in ManifestController

4 years agoref #8907 adding missing constructor to hql query
Andreas Kohlbecker [Mon, 30 Mar 2020 10:30:52 +0000 (12:30 +0200)]
ref #8907 adding missing constructor to hql query

4 years agocleanup
a.mueller [Fri, 27 Mar 2020 16:20:17 +0000 (17:20 +0100)]
cleanup

4 years agocleanup
a.mueller [Fri, 27 Mar 2020 15:53:14 +0000 (16:53 +0100)]
cleanup

4 years agocleanup and remove ITitleDao.findByTitleAndClass(xxx) (2)
a.mueller [Fri, 27 Mar 2020 15:46:03 +0000 (16:46 +0100)]
cleanup and remove ITitleDao.findByTitleAndClass(xxx) (2)

4 years agocleanup and remove ITitleDao.findByTitleAndClass(xxx)
a.mueller [Fri, 27 Mar 2020 15:24:27 +0000 (16:24 +0100)]
cleanup and remove ITitleDao.findByTitleAndClass(xxx)

4 years agofix #8911 fixing initstrategy for Taxon Descriptions
Andreas Kohlbecker [Fri, 27 Mar 2020 15:22:55 +0000 (16:22 +0100)]
fix #8911 fixing initstrategy for Taxon Descriptions

4 years agocleanup
a.mueller [Fri, 27 Mar 2020 15:09:26 +0000 (16:09 +0100)]
cleanup

4 years agocleanup
a.mueller [Fri, 27 Mar 2020 15:02:21 +0000 (16:02 +0100)]
cleanup

4 years agofix correct handling of description configuration
Katja Luther [Fri, 27 Mar 2020 10:32:59 +0000 (11:32 +0100)]
fix correct handling of description configuration

4 years agomoving ReferenceEllypsisFormatter to package eu.etaxonomy.cdm.format.reference
Andreas Kohlbecker [Fri, 27 Mar 2020 10:09:49 +0000 (11:09 +0100)]
moving ReferenceEllypsisFormatter to package eu.etaxonomy.cdm.format.reference

4 years agoref #8907 basing testGetTaxonNodeUuidAndTitleCacheOfacceptedTaxaByClassificationForNa...
Andreas Kohlbecker [Thu, 26 Mar 2020 16:19:04 +0000 (17:19 +0100)]
ref #8907 basing testGetTaxonNodeUuidAndTitleCacheOfacceptedTaxaByClassificationForNameWithoutRank on TaxonNodeDaoHibernateImplTest.findWithoutRank.xml

4 years agoref #8907 cleaning up test data
Andreas Kohlbecker [Thu, 26 Mar 2020 14:58:08 +0000 (15:58 +0100)]
ref #8907 cleaning up test data

4 years agoref #8907 SortableTaxonNodeQueryResultComparator to replace UuidAndTitleCacheTaxonCom...
Andreas Kohlbecker [Thu, 26 Mar 2020 14:42:40 +0000 (15:42 +0100)]
ref #8907 SortableTaxonNodeQueryResultComparator to replace UuidAndTitleCacheTaxonComparator - step 2

4 years agoref #8907 SortableTaxonNodeQueryResultComparator to replace UuidAndTitleCacheTaxonCom...
Andreas Kohlbecker [Thu, 26 Mar 2020 13:10:33 +0000 (14:10 +0100)]
ref #8907 SortableTaxonNodeQueryResultComparator to replace UuidAndTitleCacheTaxonComparator

4 years agocleanup
a.mueller [Thu, 26 Mar 2020 13:37:39 +0000 (14:37 +0100)]
cleanup

4 years agocleanup
a.mueller [Mon, 23 Mar 2020 21:50:23 +0000 (22:50 +0100)]
cleanup

4 years agocleanup
Andreas Müller [Mon, 23 Mar 2020 21:52:40 +0000 (22:52 +0100)]
cleanup

4 years agoUpdating develop poms back to pre merge state
jenkins [Mon, 23 Mar 2020 12:49:22 +0000 (13:49 +0100)]
Updating develop poms back to pre merge state

4 years agoMerge branch 'master' into develop
jenkins [Mon, 23 Mar 2020 12:49:21 +0000 (13:49 +0100)]
Merge branch 'master' into develop

4 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Mon, 23 Mar 2020 12:49:20 +0000 (13:49 +0100)]
updating develop poms to master versions to avoid merge conflicts

4 years agoMerge branch 'release/5.13.0' 5.13.0
jenkins [Mon, 23 Mar 2020 12:49:14 +0000 (13:49 +0100)]
Merge branch 'release/5.13.0'

4 years agoupdating poms for branch'release/5.13.0' with non-snapshot versions
jenkins [Mon, 23 Mar 2020 12:28:29 +0000 (13:28 +0100)]
updating poms for branch'release/5.13.0' with non-snapshot versions

4 years agoupdating poms for 5.14.0-SNAPSHOT development
jenkins [Mon, 23 Mar 2020 11:41:38 +0000 (12:41 +0100)]
updating poms for 5.14.0-SNAPSHOT development

4 years agofix #8892 fix select statement for TaxonNodeDaoHibernateImpl.getUuidAndTitleCache() origin/release/5.13.0
Andreas Müller [Sat, 21 Mar 2020 00:27:18 +0000 (01:27 +0100)]
fix #8892 fix select statement for TaxonNodeDaoHibernateImpl.getUuidAndTitleCache()

4 years agoref #8892 implementing test for TaxonNodeDaoHibernateImpl.getUuidAndTitleCache()
Andreas Kohlbecker [Fri, 20 Mar 2020 18:44:04 +0000 (19:44 +0100)]
ref  #8892 implementing test for TaxonNodeDaoHibernateImpl.getUuidAndTitleCache()

4 years agoref #8892 loading ranks in hql with LEFT OUTER JOINs
Andreas Kohlbecker [Fri, 20 Mar 2020 18:11:15 +0000 (19:11 +0100)]
ref #8892 loading ranks in hql with LEFT OUTER JOINs

4 years agoref #8891 preliminary remove state from test for categorical data (as saving does...
Andreas Müller [Thu, 19 Mar 2020 23:03:23 +0000 (00:03 +0100)]
ref #8891 preliminary remove state from test for categorical data (as saving does not work yet)

4 years agoref #8891 preliminary remove state from test for categorical data (as saving does...
Andreas Müller [Thu, 19 Mar 2020 22:34:59 +0000 (23:34 +0100)]
ref #8891 preliminary remove state from test for categorical data (as saving does not work yet)

4 years agocleanup
Andreas Müller [Thu, 19 Mar 2020 22:17:39 +0000 (23:17 +0100)]
cleanup

4 years agoref #8891 Add CategoricalData and QuantitativeData to DwCA export
Andreas Müller [Thu, 19 Mar 2020 22:08:49 +0000 (23:08 +0100)]
ref #8891 Add CategoricalData and QuantitativeData to DwCA export

4 years agomove base formatter to base package
Andreas Müller [Fri, 13 Mar 2020 09:03:45 +0000 (10:03 +0100)]
move base formatter to base package

4 years agoref #8328 improving permission check in NameController and fixing check in Registrati...
Andreas Kohlbecker [Wed, 18 Mar 2020 10:54:17 +0000 (11:54 +0100)]
ref #8328 improving permission check in NameController and fixing check in RegistrationController

4 years agoref #8328 hiding name relations with names for unpublished registrations from webserv...
Andreas Kohlbecker [Wed, 18 Mar 2020 10:42:24 +0000 (11:42 +0100)]
ref #8328 hiding name relations with names for unpublished registrations from webservice response

4 years agoref #6970 fixing NPE
Andreas Kohlbecker [Tue, 17 Mar 2020 12:15:58 +0000 (13:15 +0100)]
ref #6970 fixing NPE

4 years agofix #8836 group Editor-Reference implemented (see also ref #8835)
Andreas Kohlbecker [Mon, 16 Mar 2020 16:56:10 +0000 (17:56 +0100)]
fix #8836 group  Editor-Reference implemented (see also ref #8835)

4 years agofix #8427 fixing init strategy for references and authorship
Andreas Kohlbecker [Mon, 16 Mar 2020 11:35:44 +0000 (12:35 +0100)]
fix #8427 fixing init strategy for references and authorship

4 years agofix #8866 fixing incorrect bean initialization which has been indruduced during ref...
Andreas Kohlbecker [Mon, 16 Mar 2020 08:39:51 +0000 (09:39 +0100)]
fix #8866 fixing incorrect bean initialization which has been indruduced during ref #7745

4 years agoref #8892: add missing comparator
Katja Luther [Fri, 13 Mar 2020 13:02:35 +0000 (14:02 +0100)]
ref #8892: add missing comparator

4 years agofix #8892: fix problem of name without rank in taxon search
Katja Luther [Fri, 13 Mar 2020 12:06:20 +0000 (13:06 +0100)]
fix #8892: fix problem of name without rank in taxon search

4 years agofix #8881 Use pure last names (without initials) for in-references of taxon names
Andreas Müller [Tue, 10 Mar 2020 13:15:39 +0000 (14:15 +0100)]
fix #8881 Use pure last names (without initials) for in-references of taxon names

4 years agocleanup
Andreas Müller [Tue, 10 Mar 2020 13:14:43 +0000 (14:14 +0100)]
cleanup

4 years agoref #8839 directly referencing the role field
Andreas Kohlbecker [Tue, 10 Mar 2020 08:35:23 +0000 (09:35 +0100)]
ref #8839 directly referencing the role field

4 years agoref #8044: moveTerm return updateResult and voc search is contains search
Katja Luther [Mon, 9 Mar 2020 13:37:05 +0000 (14:37 +0100)]
ref #8044: moveTerm return updateResult and voc search is contains search

4 years agoref #8867 extending taxon manifest by includeTaxonomicChildren parameter
Andreas Kohlbecker [Mon, 9 Mar 2020 12:41:45 +0000 (13:41 +0100)]
ref #8867 extending taxon manifest by includeTaxonomicChildren parameter

4 years agoref #8867 better presentation of licenses, copyright and access right
Andreas Kohlbecker [Mon, 9 Mar 2020 11:27:34 +0000 (12:27 +0100)]
ref #8867 better presentation of licenses, copyright and access right

4 years agoref #8624: add search on fulltitleCache
Katja Luther [Mon, 9 Mar 2020 09:50:08 +0000 (10:50 +0100)]
ref #8624: add search on fulltitleCache

4 years agoref #8867 showing licenses also in manifest attributions
Andreas Kohlbecker [Mon, 9 Mar 2020 07:24:28 +0000 (08:24 +0100)]
ref #8867 showing licenses also in manifest attributions

4 years agoref #8867 copy image attributions & licenses to the manifest
Andreas Kohlbecker [Sat, 7 Mar 2020 22:06:42 +0000 (23:06 +0100)]
ref #8867 copy image attributions & licenses to the manifest

4 years agoref #8867 dedicated handling of rights and credits
Andreas Kohlbecker [Fri, 6 Mar 2020 17:17:37 +0000 (18:17 +0100)]
ref #8867 dedicated handling of rights and credits

4 years agoref #8867 adding image amd cdm media metadata to the manifest
Andreas Kohlbecker [Fri, 6 Mar 2020 11:03:25 +0000 (12:03 +0100)]
ref #8867 adding image amd cdm media metadata to the manifest

4 years agoref #6970 fixing bug related to undefined values and adding test for ref #7093
Andreas Kohlbecker [Thu, 5 Mar 2020 14:43:25 +0000 (15:43 +0100)]
ref #6970 fixing bug related to undefined values and adding test for ref #7093

4 years agoref #6970 MediaUtils: restoring removed method
Andreas Kohlbecker [Thu, 5 Mar 2020 12:42:24 +0000 (13:42 +0100)]
ref #6970 MediaUtils: restoring removed method

4 years agorevert 1bfcbbafdbce6e . Tests are still not always running.
Andreas Müller [Thu, 5 Mar 2020 11:05:39 +0000 (12:05 +0100)]
revert 1bfcbbafdbce6e . Tests are still not always running.

4 years agoref #8867 iiif REST service controller correctly choosing thumbnail and fullsize...
Andreas Kohlbecker [Thu, 5 Mar 2020 10:08:42 +0000 (11:08 +0100)]
ref #8867 iiif REST service controller correctly choosing thumbnail and fullsize resolutions

4 years agoref #6970 MediaUtils.filterAndOrderMediaRepresentations with improved algorithm
Andreas Kohlbecker [Thu, 5 Mar 2020 10:03:50 +0000 (11:03 +0100)]
ref #6970 MediaUtils.filterAndOrderMediaRepresentations with improved algorithm

4 years agounignore StructuredDescriptionAggregationTest to test
Andreas Müller [Tue, 3 Mar 2020 16:20:28 +0000 (17:20 +0100)]
unignore StructuredDescriptionAggregationTest to test

... if this was really the reason for tests failing from time to time

4 years agoref #5022 removing commented CodehausMuleRepository
Andreas Kohlbecker [Tue, 3 Mar 2020 15:18:57 +0000 (16:18 +0100)]
ref #5022 removing commented CodehausMuleRepository

4 years agousing https for jboss repo
Andreas Kohlbecker [Tue, 3 Mar 2020 13:33:45 +0000 (14:33 +0100)]
using https for jboss repo

4 years agoupdating jboss repo to new location: repository.jboss.org
Andreas Kohlbecker [Tue, 3 Mar 2020 13:17:45 +0000 (14:17 +0100)]
updating jboss repo to new location: repository.jboss.org

4 years agoref #5022 remove spring repositories
Andreas Müller [Mon, 2 Mar 2020 14:26:17 +0000 (15:26 +0100)]
ref #5022 remove spring repositories

4 years agoref #5022 remove (commented) itextpdf repository
Andreas Müller [Mon, 2 Mar 2020 13:32:13 +0000 (14:32 +0100)]
ref #5022 remove (commented) itextpdf repository

4 years agocleanup
Andreas Müller [Mon, 2 Mar 2020 13:31:08 +0000 (14:31 +0100)]
cleanup

4 years agoadd transaction to state in ExcelImportBase
Andreas Müller [Thu, 20 Feb 2020 12:39:41 +0000 (13:39 +0100)]
add transaction to state in ExcelImportBase

4 years agoadd some user types to noHandle for referencingObjects search
Andreas Müller [Thu, 20 Feb 2020 12:38:18 +0000 (13:38 +0100)]
add some user types to noHandle for referencingObjects search

4 years agocleanup
Andreas Müller [Thu, 20 Feb 2020 12:37:25 +0000 (13:37 +0100)]
cleanup

4 years agoref #8047: add preferencePredicate for status order
Katja Luther [Tue, 3 Mar 2020 10:32:05 +0000 (11:32 +0100)]
ref #8047: add preferencePredicate for status order

4 years agofixing multiple bugs which have been reported by SpotBugs
Andreas Kohlbecker [Tue, 3 Mar 2020 10:09:58 +0000 (11:09 +0100)]
fixing multiple bugs which have been reported by SpotBugs

4 years agoref #8867 basic implementation of iiif REST service controller
Andreas Kohlbecker [Sat, 29 Feb 2020 11:07:21 +0000 (12:07 +0100)]
ref #8867 basic implementation of iiif REST service controller

4 years agoref #8868 & ref #5083 bumping jackson to 2.10.2
Andreas Kohlbecker [Sat, 29 Feb 2020 09:41:01 +0000 (10:41 +0100)]
ref #8868 & ref #5083 bumping jackson to 2.10.2

4 years agofix abcd import with missing collectorsFieldNumber - continue
Katja Luther [Thu, 27 Feb 2020 19:13:07 +0000 (20:13 +0100)]
fix abcd import with missing collectorsFieldNumber - continue

4 years agofix abcd import for missing collectorsFieldNumber
Katja Luther [Thu, 27 Feb 2020 12:15:15 +0000 (13:15 +0100)]
fix abcd import for missing collectorsFieldNumber

4 years agoref #8047: add preferencePredicate NUmberOfStatus
Katja Luther [Thu, 27 Feb 2020 12:12:15 +0000 (13:12 +0100)]
ref #8047: add preferencePredicate NUmberOfStatus

4 years agoref #8047: open list of taxa in distribution editor
Katja Luther [Wed, 26 Feb 2020 08:47:30 +0000 (09:47 +0100)]
ref #8047: open list of taxa in distribution editor

4 years agoref #8812 option for measuring remoting method execution duration
Andreas Kohlbecker [Mon, 17 Feb 2020 13:07:37 +0000 (14:07 +0100)]
ref #8812 option for measuring remoting method execution duration

4 years agoallow adding reverse representations to taxon relationship type during import
Andreas Müller [Mon, 10 Feb 2020 16:23:13 +0000 (17:23 +0100)]
allow adding reverse representations to taxon relationship type during import

4 years agocleanup
Andreas Müller [Mon, 10 Feb 2020 16:22:31 +0000 (17:22 +0100)]
cleanup

4 years agoremove commented test dependencies from ext-pom
Andreas Müller [Mon, 10 Feb 2020 16:20:45 +0000 (17:20 +0100)]
remove commented test dependencies from ext-pom

4 years agoref #8562: adapt language preference predicates
Katja Luther [Wed, 5 Feb 2020 12:53:58 +0000 (13:53 +0100)]
ref #8562: adapt language preference predicates

4 years agoref #8044: add missing termcollection dto
Katja Luther [Mon, 3 Feb 2020 08:54:16 +0000 (09:54 +0100)]
ref #8044: add missing termcollection dto