Katja Luther [Mon, 7 Nov 2016 08:42:10 +0000 (09:42 +0100)]
minor
Katja Luther [Mon, 7 Nov 2016 08:28:57 +0000 (09:28 +0100)]
ref #6166: import siblings if an specimen and smaller changes in ABCD
import
Patrick Plitzner [Sun, 6 Nov 2016 13:22:02 +0000 (14:22 +0100)]
ref #4866 Fix transient object exception
- fixed typo
Patrick Plitzner [Sat, 5 Nov 2016 14:15:34 +0000 (15:15 +0100)]
ref #5449 Imporvements for CSV export
- Fix initialization problems
- Correctly match taxon name to chosen classification
- allow export for single leaf node
Patrick Plitzner [Fri, 4 Nov 2016 12:14:27 +0000 (13:14 +0100)]
ref #4866 Test for first implementation for clone classification
Patrick Plitzner [Fri, 4 Nov 2016 12:13:59 +0000 (13:13 +0100)]
ref #4866 Create new description set when cloning taxon (avoid
HibernateException)
Patrick Plitzner [Fri, 4 Nov 2016 12:13:23 +0000 (13:13 +0100)]
ref #4866 First implementation for clone classification (including test)
Katja Luther [Thu, 3 Nov 2016 13:03:41 +0000 (14:03 +0100)]
fix #6174: isDeletable needs to be called with UUID and the objects is
loaded on server side
Patrick Plitzner [Thu, 3 Nov 2016 09:12:11 +0000 (10:12 +0100)]
ref #5458 Add classification filter to service method
Katja Luther [Thu, 3 Nov 2016 08:48:06 +0000 (09:48 +0100)]
fix media deletion
Patrick Plitzner [Tue, 1 Nov 2016 15:09:26 +0000 (16:09 +0100)]
ref #5458 Added find-by-titleCache method for taxon node service
Katja Luther [Fri, 28 Oct 2016 08:34:08 +0000 (10:34 +0200)]
abcd import: association type living culture is a parent child relation
Patrick Plitzner [Wed, 26 Oct 2016 09:07:15 +0000 (11:07 +0200)]
ref #2380 Implement service for getting parent of
UuidAndTitleCache<TaxonNode>
- parent of either ITaxonTree or UuidAndTitleCache<TaxonNode>
can be retrieved
- added JUnit test and test file
Patrick Plitzner [Tue, 25 Oct 2016 14:37:28 +0000 (16:37 +0200)]
ref #2380 Implement service for getting children of
UuidAndTitleCache<TaxonNode>
- direct children of either ITaxonTree or UuidAndTitleCache<TaxonNode>
can be retrieved
- added JUnit test
Patrick Plitzner [Mon, 24 Oct 2016 10:59:59 +0000 (12:59 +0200)]
fix #4453 Enhance portal visualization of molecular data
- used DefinedTerm constants for UUIDS
- used titleCache for all DerivedUnits
- move string representations to portal code
Katja Luther [Mon, 24 Oct 2016 11:01:23 +0000 (13:01 +0200)]
add test for ermIdInVocabularyComparator
Katja Luther [Mon, 24 Oct 2016 10:54:47 +0000 (12:54 +0200)]
fix TermIdInVocabularyComparator
Katja Luther [Mon, 24 Oct 2016 08:33:09 +0000 (10:33 +0200)]
move taxonnode needs to save old parent and child node
Katja Luther [Fri, 21 Oct 2016 12:19:52 +0000 (14:19 +0200)]
ref #5972: add service method to get count of referencing objects
Andreas Kohlbecker [Fri, 21 Oct 2016 10:06:19 +0000 (12:06 +0200)]
enabling http POST for a couple of name catalogue controller methods
Katja Luther [Thu, 20 Oct 2016 11:04:09 +0000 (13:04 +0200)]
childNode needs to be saved in TestService to fix the editor test
Katja Luther [Thu, 20 Oct 2016 10:11:58 +0000 (12:11 +0200)]
set test to ignore, create ticket to fix this.
Katja Luther [Thu, 20 Oct 2016 10:10:14 +0000 (12:10 +0200)]
fix failing test
Katja Luther [Thu, 20 Oct 2016 09:44:51 +0000 (11:44 +0200)]
minor
Katja Luther [Tue, 18 Oct 2016 08:29:28 +0000 (10:29 +0200)]
ref #6099: removing cascading to child nodes and adapting the service and persistence layer
Katja Luther [Tue, 18 Oct 2016 07:59:04 +0000 (09:59 +0200)]
ref #5431: the type designation blocks the name deletion only if it is the type name
Andreas Kohlbecker [Thu, 13 Oct 2016 15:46:39 +0000 (17:46 +0200)]
fix #6127 handling case the taxon has no LSID, avoid NPE in NameCatalogeController
Andreas Kohlbecker [Wed, 12 Oct 2016 13:04:05 +0000 (15:04 +0200)]
IDE launcher config cdmlib-remote-webapp-unit-test
Andreas Kohlbecker [Wed, 12 Oct 2016 13:02:47 +0000 (15:02 +0200)]
relaxing web service access restrictions
Andreas Kohlbecker [Tue, 11 Oct 2016 08:01:18 +0000 (10:01 +0200)]
ref #6118 OAuth2 ready for production
- removing development setup
- UserController to return details on the authenticated principal
Andreas Kohlbecker [Mon, 10 Oct 2016 20:44:46 +0000 (22:44 +0200)]
ref #6118 working test implementation of OAuth2
- grant types 'implicite', 'authorization_code' tested and working
- /manage/ service protected (OK for production)
- /classification/ endpoint restricted for testing only
Andreas Kohlbecker [Fri, 7 Oct 2016 10:47:43 +0000 (12:47 +0200)]
ref #6118 OAuth2 AuthorizationServer implemented
Andreas Kohlbecker [Thu, 6 Oct 2016 19:07:33 +0000 (21:07 +0200)]
rel #6118 switching from xml to java based web security configuration
Andreas Kohlbecker [Wed, 5 Oct 2016 14:18:08 +0000 (16:18 +0200)]
cleaning indent
Katja Luther [Fri, 7 Oct 2016 13:11:58 +0000 (15:11 +0200)]
ref #5972: add method to count referencing objects
Andreas Müller [Thu, 6 Oct 2016 14:57:47 +0000 (16:57 +0200)]
minor
Andreas Müller [Thu, 6 Oct 2016 14:57:15 +0000 (16:57 +0200)]
ref #5499 add some markerType methods
Andreas Müller [Thu, 6 Oct 2016 14:16:34 +0000 (16:16 +0200)]
fix #6122 fix signature issue
Andreas Müller [Thu, 6 Oct 2016 12:51:36 +0000 (14:51 +0200)]
fix #6122 add titleCache service to remote
Andreas Müller [Thu, 6 Oct 2016 12:38:25 +0000 (14:38 +0200)]
Use abstract controller for identifiable controllers
Andreas Müller [Thu, 6 Oct 2016 12:32:23 +0000 (14:32 +0200)]
Create and rename Identifiable(List)Controllers
Andreas Müller [Thu, 6 Oct 2016 12:24:32 +0000 (14:24 +0200)]
fix #6122 add titleCache service
Andreas Müller [Thu, 6 Oct 2016 11:24:42 +0000 (13:24 +0200)]
fx #6119 Implement uuidAndTitleCache remote services
Andreas Müller [Thu, 6 Oct 2016 10:36:53 +0000 (12:36 +0200)]
fix #6120 Cleanup uuidAndTitleCache methods
Andreas Müller [Tue, 4 Oct 2016 12:26:42 +0000 (14:26 +0200)]
Minor cleanup
Katja Luther [Fri, 30 Sep 2016 19:09:04 +0000 (21:09 +0200)]
add missing changes
Katja Luther [Fri, 30 Sep 2016 14:34:25 +0000 (16:34 +0200)]
minor
Katja Luther [Fri, 30 Sep 2016 14:09:54 +0000 (16:09 +0200)]
specimen import/search changes
Katja Luther [Tue, 27 Sep 2016 06:55:31 +0000 (08:55 +0200)]
delete system.out.println from test
jenkins [Fri, 23 Sep 2016 13:37:31 +0000 (15:37 +0200)]
Updating develop poms back to pre merge state
jenkins [Fri, 23 Sep 2016 13:37:30 +0000 (15:37 +0200)]
Merge branch 'master' into develop
jenkins [Fri, 23 Sep 2016 13:37:29 +0000 (15:37 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Fri, 23 Sep 2016 13:37:26 +0000 (15:37 +0200)]
Merge branch 'release/4.3.0'
jenkins [Fri, 23 Sep 2016 13:19:49 +0000 (15:19 +0200)]
updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins [Fri, 23 Sep 2016 13:09:41 +0000 (15:09 +0200)]
updating poms for 4.4.0-SNAPSHOT development
Andreas Müller [Fri, 23 Sep 2016 12:48:37 +0000 (14:48 +0200)]
Rename doPageChildNodes
Andreas Müller [Fri, 23 Sep 2016 09:40:44 +0000 (11:40 +0200)]
ref #6065 improved Pager handling
Andreas Müller [Fri, 23 Sep 2016 09:04:26 +0000 (11:04 +0200)]
ref #6065 improved Pager handling and pager exception handling
Andreas Müller [Fri, 23 Sep 2016 09:03:05 +0000 (11:03 +0200)]
ref #6065 Handle synonyms in taxonInContext
Andreas Müller [Fri, 23 Sep 2016 09:00:49 +0000 (11:00 +0200)]
Cleanup
Andreas Müller [Thu, 22 Sep 2016 12:10:54 +0000 (14:10 +0200)]
ref #6065 fix NPEs in classification service
Andreas Müller [Thu, 22 Sep 2016 11:25:20 +0000 (13:25 +0200)]
ref #6065 fix NPE in pageSize/limit
Andreas Müller [Thu, 22 Sep 2016 10:27:27 +0000 (12:27 +0200)]
ref #6065 fix NPE in pageSize
Andreas Müller [Thu, 22 Sep 2016 09:20:16 +0000 (11:20 +0200)]
ref #6065 fix page size and add marked ancestors
Andreas Müller [Thu, 22 Sep 2016 08:37:00 +0000 (10:37 +0200)]
ref #6065 fix missing taxonUuid in URL
Andreas Müller [Wed, 21 Sep 2016 15:49:13 +0000 (17:49 +0200)]
ref #6065 first implementation of taxonInContext service
Andreas Müller [Wed, 21 Sep 2016 15:47:07 +0000 (17:47 +0200)]
cleanup
Andreas Müller [Wed, 21 Sep 2016 13:11:48 +0000 (15:11 +0200)]
further refactor FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller [Wed, 21 Sep 2016 12:48:45 +0000 (14:48 +0200)]
rename FindByIdentifierDTO and FindByMarkerDTO
Andreas Kohlbecker [Wed, 21 Sep 2016 09:24:49 +0000 (11:24 +0200)]
Revert "fix #6037 per batch transction commit implemented for excel imports"
This reverts commit
53067226137bd8528e6bc26f21edbf98aebe26a9.
Andreas Müller [Wed, 21 Sep 2016 08:51:19 +0000 (10:51 +0200)]
ref #6066 rename childNodes to childNodesByTaxon in ClassificationController
Andreas Müller [Wed, 21 Sep 2016 08:07:46 +0000 (10:07 +0200)]
ref #6066 add getChildNodes to classification service
Andreas Kohlbecker [Tue, 20 Sep 2016 15:16:00 +0000 (17:16 +0200)]
ref #6087 adding orderINdex to TermDTO
Andreas Müller [Tue, 20 Sep 2016 11:51:45 +0000 (13:51 +0200)]
ref #6066 fix Index out of bound exception
Katja Luther [Mon, 19 Sep 2016 11:12:17 +0000 (13:12 +0200)]
fix #6061: search in titlecache and nomenclatural titleCache in getUuidAndAbbrevTitleCache
Katja Luther [Mon, 19 Sep 2016 08:08:51 +0000 (10:08 +0200)]
fix failing IPNI Service Test
Andreas Müller [Sat, 17 Sep 2016 05:52:39 +0000 (07:52 +0200)]
revert tests
Andreas Müller [Sat, 17 Sep 2016 05:21:16 +0000 (07:21 +0200)]
Ignore service test
Andreas Müller [Sat, 17 Sep 2016 05:04:59 +0000 (07:04 +0200)]
ref #6072 test missing entity in webservice
Andreas Müller [Fri, 16 Sep 2016 21:18:51 +0000 (23:18 +0200)]
ref #6072 test missing entity in webservice
Andreas Müller [Fri, 16 Sep 2016 20:35:16 +0000 (22:35 +0200)]
ref #6072 set defaults to false and hardcode includeEntity to true for debugging
Andreas Müller [Fri, 16 Sep 2016 17:56:48 +0000 (19:56 +0200)]
ref #6072 fix signature issue in remote (2nd try)
Andreas Müller [Fri, 16 Sep 2016 17:31:27 +0000 (19:31 +0200)]
ref #6072 fix signature issue in remote
Andreas Müller [Fri, 16 Sep 2016 17:03:44 +0000 (19:03 +0200)]
ref #6072 fix compilation issue in IIdentifiableEntityService
Andreas Müller [Fri, 16 Sep 2016 15:30:16 +0000 (17:30 +0200)]
Cleanup
Andreas Müller [Fri, 16 Sep 2016 15:30:05 +0000 (17:30 +0200)]
fix #6072 Implement findIdentifiableEntityByMarkers
Andreas Müller [Thu, 15 Sep 2016 21:20:43 +0000 (23:20 +0200)]
ref #6089 Remove failing irrelevant test
Andreas Müller [Thu, 15 Sep 2016 21:09:27 +0000 (23:09 +0200)]
ref #6089 Remove all calls and methods for taxonomicChildrenCount and taxonomicParentCache
Andreas Müller [Thu, 15 Sep 2016 21:00:49 +0000 (23:00 +0200)]
Cleanup; Delete unnecessary test classes.
Andreas Müller [Thu, 15 Sep 2016 16:13:17 +0000 (18:13 +0200)]
fix #6066 Implement doPageChildNodes with doSynonyms
Andreas Müller [Thu, 15 Sep 2016 16:08:45 +0000 (18:08 +0200)]
Clean up
Andreas Müller [Thu, 15 Sep 2016 16:04:40 +0000 (18:04 +0200)]
Adapt failing test in NonViralNameParserImplTest
Andreas Kohlbecker [Thu, 15 Sep 2016 13:33:19 +0000 (15:33 +0200)]
ref #6086 solving the problems in the java-script of the web application monitor widget:
- chunk information: number rounded and label renamed
- Percentage number rounding fixed
Andreas Müller [Thu, 15 Sep 2016 13:10:32 +0000 (15:10 +0200)]
ref #6086 fix failing test
Andreas Müller [Thu, 15 Sep 2016 12:27:43 +0000 (14:27 +0200)]
rel #6086 Improve rounding for progress monitor
* fix error in rounding by using round not ceil
* add method for user defined scaled rounding
Andreas Müller [Thu, 15 Sep 2016 12:21:20 +0000 (14:21 +0200)]
some cleanup
Katja Luther [Thu, 15 Sep 2016 08:41:47 +0000 (10:41 +0200)]
fix #5837: search on abbrevTitleCache instead of abbrev title
Andreas Kohlbecker [Wed, 14 Sep 2016 15:11:20 +0000 (17:11 +0200)]
correcting erroneous commit
Andreas Kohlbecker [Tue, 13 Sep 2016 16:25:39 +0000 (18:25 +0200)]
gitignore
Andreas Kohlbecker [Tue, 13 Sep 2016 14:47:51 +0000 (16:47 +0200)]
fix #4497 solving problem with status parameter in taxon search