Andreas Müller [Fri, 27 Sep 2013 17:39:52 +0000 (17:39 +0000)]
reordering and changing tests for OriginalSOurceType and make second non capital in MeasurementUnit.csv
Andreas Müller [Fri, 27 Sep 2013 17:38:03 +0000 (17:38 +0000)]
minor
Andreas Kohlbecker [Fri, 27 Sep 2013 13:34:19 +0000 (13:34 +0000)]
restoring old findTaxaAndNames controller methods
Patric Plitzner [Fri, 27 Sep 2013 12:45:30 +0000 (12:45 +0000)]
- query parameters are read from wizard page
- enhanced query's toString() method
Andreas Kohlbecker [Fri, 27 Sep 2013 09:26:13 +0000 (09:26 +0000)]
adding POST capabilities to rest service endpoint
Andreas Kohlbecker [Fri, 27 Sep 2013 09:26:10 +0000 (09:26 +0000)]
furher improvement to the TitleAndNameCacheAutoInitializer
Andreas Müller [Fri, 27 Sep 2013 09:10:01 +0000 (09:10 +0000)]
fix missing taxon.titleCache length ->800 in update script
Andreas Müller [Thu, 26 Sep 2013 16:38:16 +0000 (16:38 +0000)]
minor updates to updater
Andreas Müller [Thu, 26 Sep 2013 16:37:43 +0000 (16:37 +0000)]
preliminary fix for ICBN bug #3658
Andreas Müller [Thu, 26 Sep 2013 16:24:12 +0000 (16:24 +0000)]
some bugfixes for update script
Andreas Kohlbecker [Thu, 26 Sep 2013 15:45:49 +0000 (15:45 +0000)]
improving the TitleCacheAutoInitializer and turning it into a TitleAndNameCacheAutoInitializer
Andreas Kohlbecker [Thu, 26 Sep 2013 15:45:44 +0000 (15:45 +0000)]
moving all beaninitializer classes to new package 'eu.etaxonomy.cdm.persistence.dao.initializer'
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:08 +0000 (12:50 +0000)]
refactoring MatchMode class
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:06 +0000 (12:50 +0000)]
todo comment regarding #2432 ([E+M][Portal] Implement search for multiple areas)
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:03 +0000 (12:50 +0000)]
using the recomendet requestPathAndQuery() for logging HTTP requests in controllers
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:01 +0000 (12:50 +0000)]
using the new search method in the controlers and fixing a bug with missing grouping_by field
Patric Plitzner [Thu, 26 Sep 2013 07:08:02 +0000 (07:08 +0000)]
- fixed BioCASE query XML
Andreas Müller [Wed, 25 Sep 2013 13:21:31 +0000 (13:21 +0000)]
reintegrate cdm-3.3 branch into trunk
Andreas Müller [Wed, 25 Sep 2013 13:14:14 +0000 (13:14 +0000)]
minor
Andreas Müller [Wed, 25 Sep 2013 13:13:25 +0000 (13:13 +0000)]
change version of parent pom -> 3.3.0
Andreas Müller [Wed, 25 Sep 2013 13:12:30 +0000 (13:12 +0000)]
change version ->3.3.0, move CdmMetaData, change schema version ->
20130924, fix TaxonServiceSearch test, update update-script
Patric Plitzner [Wed, 25 Sep 2013 11:38:31 +0000 (11:38 +0000)]
- added hashCode(), equals(), and toString() method to BioCaseQuery
Andreas Müller [Wed, 25 Sep 2013 11:37:12 +0000 (11:37 +0000)]
merge trunk into cdmlib v3.3 branch
Andreas Müller [Wed, 25 Sep 2013 11:34:05 +0000 (11:34 +0000)]
remove old TermsDataSet
Andreas Müller [Wed, 25 Sep 2013 11:28:14 +0000 (11:28 +0000)]
merge trunk into cdmlib v3.3 branch
Andreas Kohlbecker [Wed, 25 Sep 2013 11:15:36 +0000 (11:15 +0000)]
cleaning up
Andreas Kohlbecker [Wed, 25 Sep 2013 11:14:54 +0000 (11:14 +0000)]
adding missing type restriction for common names
Andreas Müller [Wed, 25 Sep 2013 10:44:36 +0000 (10:44 +0000)]
comment automated writing of test dataset
Andreas Müller [Wed, 25 Sep 2013 10:42:30 +0000 (10:42 +0000)]
minor
Andreas Kohlbecker [Wed, 25 Sep 2013 09:38:07 +0000 (09:38 +0000)]
fixing invalid test data
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:51 +0000 (09:07 +0000)]
commenting potential bug, see #3728 (DescriptionListPortalController.getDescriptionElementsForTaxon() seems to be using inapproptiate init strategy)
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:49 +0000 (09:07 +0000)]
documentation
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:46 +0000 (09:07 +0000)]
commenting out non working part of test, see #3730 (Taxon.removeTaxonRelation() raises error on update)
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:44 +0000 (09:07 +0000)]
all search tests running successful
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:40 +0000 (09:07 +0000)]
implemnting TaxonRelationshipClassBridge to also allow filtering misapplications by distribution, but run into a potential java bug which is really weired the solution i found to circumvent it is documented in TaxonServiceImpl.java
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:35 +0000 (09:07 +0000)]
TODO comment to the ClassInfoBridge
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:29 +0000 (09:07 +0000)]
another TODO comments regarding the AcceptedTaxonBridge
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:26 +0000 (09:07 +0000)]
another TODO comments regarding the AcceptedTaxonBridge
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:24 +0000 (09:07 +0000)]
search by synonym also working with distrubution filter. TODO comments to the AcceptedTaxonBridge
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:19 +0000 (09:07 +0000)]
adding missing @Override
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:05 +0000 (09:07 +0000)]
changing test data a little bit
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:00 +0000 (09:07 +0000)]
distribution filter now working for taxon search by common names. commit includes results from research on best way to imnplement this
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:56 +0000 (09:06 +0000)]
refactoring for a lucene cross index search
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:52 +0000 (09:06 +0000)]
further tests show that cross index search is not working, commenting out these tests for refactoring
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:48 +0000 (09:06 +0000)]
turning off spell check index purging
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:43 +0000 (09:06 +0000)]
filtering of lucene searches by distributions basically implemented, needs to be improved though
Patric Plitzner [Thu, 19 Sep 2013 13:46:38 +0000 (13:46 +0000)]
- merged changes from campanula branch
- added BioCASE query support to cdmlib-ext
Andreas Müller [Thu, 19 Sep 2013 13:33:31 +0000 (13:33 +0000)]
fix ABCD import
Andreas Müller [Thu, 19 Sep 2013 13:31:34 +0000 (13:31 +0000)]
minor
Andreas Müller [Thu, 19 Sep 2013 13:23:44 +0000 (13:23 +0000)]
moving preferences into new package and some minor changes
Andreas Müller [Thu, 19 Sep 2013 11:36:35 +0000 (11:36 +0000)]
minor
Andreas Müller [Thu, 19 Sep 2013 11:34:01 +0000 (11:34 +0000)]
refactor Abcd import so that save can be handled separately, not yet complete
Andreas Müller [Thu, 19 Sep 2013 11:32:58 +0000 (11:32 +0000)]
change cdmApp type in ioConfig to interface #3726
Andreas Müller [Thu, 19 Sep 2013 11:31:34 +0000 (11:31 +0000)]
minor
Patric Plitzner [Wed, 18 Sep 2013 13:11:50 +0000 (13:11 +0000)]
merge-update from trunk
l.morris [Wed, 18 Sep 2013 12:43:39 +0000 (12:43 +0000)]
Added cichorieae to test XML output in PublisherTest
l.morris [Wed, 18 Sep 2013 12:40:45 +0000 (12:40 +0000)]
Add getReferences method so references now harvested in the XML output for print publishing.
Andreas Müller [Tue, 17 Sep 2013 12:56:40 +0000 (12:56 +0000)]
merge trunk into v3.3 branch
Andreas Müller [Tue, 17 Sep 2013 08:42:56 +0000 (08:42 +0000)]
change parent pom version in 3.3
Andreas Müller [Tue, 17 Sep 2013 08:41:34 +0000 (08:41 +0000)]
minor
Andreas Müller [Tue, 17 Sep 2013 08:40:24 +0000 (08:40 +0000)]
some more changes to CdmPreferences including key size
Andreas Müller [Tue, 17 Sep 2013 08:37:27 +0000 (08:37 +0000)]
Some more changes to Preference service
s.buers [Mon, 16 Sep 2013 14:04:18 +0000 (14:04 +0000)]
just changed paths to relative
Andreas Müller [Mon, 16 Sep 2013 12:22:32 +0000 (12:22 +0000)]
some better implementation for CdmPreferences dao including some tests #3555
l.morris [Mon, 16 Sep 2013 12:06:59 +0000 (12:06 +0000)]
Added a new output module for print publishing of Mediawiki files.
Andreas Müller [Mon, 16 Sep 2013 11:13:14 +0000 (11:13 +0000)]
minor
Andreas Müller [Mon, 16 Sep 2013 10:58:54 +0000 (10:58 +0000)]
move AbstractStringComparator to cdmlib-commons and refactor a bit
Andreas Müller [Mon, 16 Sep 2013 09:57:35 +0000 (09:57 +0000)]
exchange comments on treeNodes for issues related to OrderColumn (#3722)
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:45 +0000 (14:10 +0000)]
removing problematic ids from result data set
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:42 +0000 (14:10 +0000)]
search for misapplied name implemented in findTaxaAndNamesByFullText() also adapting testdata and fixing a big bunch of problems with grouping and other freetext search features
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:36 +0000 (14:10 +0000)]
adding dependency for lucene-join
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:34 +0000 (14:10 +0000)]
cleaning up
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:32 +0000 (14:10 +0000)]
adapting test data to changes in previous commit
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:30 +0000 (14:10 +0000)]
problem of termloading which was overriding hibernate_sequences in testdatasets solved
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:25 +0000 (14:10 +0000)]
first implementation towards a full functional TaxonService.findTaxaAndNamesByFullText() 2
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:22 +0000 (14:10 +0000)]
first implementation towards a full functional TaxonService.findTaxaAndNamesByFullText()
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:15 +0000 (14:10 +0000)]
adding method documentation
Andreas Müller [Fri, 13 Sep 2013 12:06:52 +0000 (12:06 +0000)]
javadoc for amplification
Andreas Müller [Fri, 13 Sep 2013 11:30:41 +0000 (11:30 +0000)]
some bugfixes for TaxonNode sorting #3508
Andreas Müller [Thu, 12 Sep 2013 19:30:43 +0000 (19:30 +0000)]
minor
Andreas Müller [Thu, 12 Sep 2013 19:30:07 +0000 (19:30 +0000)]
minor
Andreas Müller [Thu, 12 Sep 2013 12:55:33 +0000 (12:55 +0000)]
partial implementation of CDM preferences (dao, service and enums): #3555
Andreas Müller [Thu, 12 Sep 2013 12:48:35 +0000 (12:48 +0000)]
rename ISectionBase -> ISection
Andreas Müller [Thu, 12 Sep 2013 12:31:27 +0000 (12:31 +0000)]
implement Section as ReferenceType #2853
Andreas Müller [Thu, 12 Sep 2013 11:48:35 +0000 (11:48 +0000)]
Javadoc for DnaMarker
Andreas Müller [Thu, 12 Sep 2013 11:48:02 +0000 (11:48 +0000)]
Javadoc for molecular classes
Andreas Müller [Wed, 11 Sep 2013 21:49:31 +0000 (21:49 +0000)]
minor
Patric Plitzner [Wed, 11 Sep 2013 16:43:03 +0000 (16:43 +0000)]
- fixed bug #3695 (Description elements do not appear in data portal if there is only one element)
Andreas Müller [Wed, 11 Sep 2013 15:03:08 +0000 (15:03 +0000)]
rename materialMethodTerm -> definedMaterialOrMethod
Andreas Müller [Wed, 11 Sep 2013 14:31:18 +0000 (14:31 +0000)]
final implementation of MaterialOrMethodEvent, Cloning, PreservationMethod, ... #3360
s.buers [Wed, 11 Sep 2013 12:36:46 +0000 (12:36 +0000)]
as reintegration failed i copied the statistic files manually into the trunk, and now commit
s.buers [Wed, 11 Sep 2013 12:23:48 +0000 (12:23 +0000)]
as reintegration failed i copied the statistic files manually into the trunk, and now commit
Andreas Müller [Mon, 9 Sep 2013 14:10:49 +0000 (14:10 +0000)]
add serId
Andreas Müller [Mon, 9 Sep 2013 13:54:21 +0000 (13:54 +0000)]
update script for vocabulary representations #3708 and some bugfixes on vocabularies and code
Andreas Müller [Mon, 9 Sep 2013 13:01:02 +0000 (13:01 +0000)]
minor
Andreas Müller [Mon, 9 Sep 2013 12:59:15 +0000 (12:59 +0000)]
add new derivation events #3714
Andreas Müller [Mon, 9 Sep 2013 10:00:08 +0000 (10:00 +0000)]
minor
Andreas Müller [Sat, 7 Sep 2013 01:47:21 +0000 (01:47 +0000)]
fix mixing abbrevLabel and label in VocabularyCreator
Andreas Müller [Sat, 7 Sep 2013 01:38:17 +0000 (01:38 +0000)]
fix #3550 (duplicated reading of TermVocabulary representations during term loading)
Andreas Müller [Sat, 7 Sep 2013 00:57:58 +0000 (00:57 +0000)]
drop sequence identifiable entity tables in update script #3360