cdmlib.git
6 years agofix #7527 making page by parameter with criteria and restrictions available in the...
Andreas Kohlbecker [Wed, 11 Jul 2018 13:46:28 +0000 (15:46 +0200)]
fix #7527 making page by parameter with criteria and restrictions available in the service layer

6 years agoref #7546 RegistrationIdentifierMinter can check for matching identifiers
Andreas Kohlbecker [Wed, 11 Jul 2018 11:15:41 +0000 (13:15 +0200)]
ref #7546 RegistrationIdentifierMinter can check for matching identifiers

6 years agoref #7509 aggregate quant. and categorical data (simple concatenation)
Patrick Plitzner [Tue, 10 Jul 2018 16:26:50 +0000 (18:26 +0200)]
ref #7509 aggregate quant. and categorical data (simple concatenation)

6 years agoref #7509 Adapt aggregation method parameter list
Patrick Plitzner [Tue, 10 Jul 2018 14:51:08 +0000 (16:51 +0200)]
ref #7509 Adapt aggregation method parameter list

6 years agoref #7509 Generalize method parameter to List
Patrick Plitzner [Tue, 10 Jul 2018 11:14:26 +0000 (13:14 +0200)]
ref #7509 Generalize method parameter to List

6 years agoMerge branch 'develop' into aggregation
Patrick Plitzner [Tue, 10 Jul 2018 10:54:40 +0000 (12:54 +0200)]
Merge branch 'develop' into aggregation

# Conflicts:
# cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java

6 years agoMerge branch 'feature/#7531' into develop
Andreas Kohlbecker [Fri, 6 Jul 2018 13:14:54 +0000 (15:14 +0200)]
Merge branch 'feature/#7531' into develop

6 years agoref #7531 CdmPermissionEvaluator.hasPermission() wraps cdm entities in TargetEntityStates feature/#7531 origin/feature/#7531
Andreas Kohlbecker [Fri, 6 Jul 2018 13:10:37 +0000 (15:10 +0200)]
ref #7531 CdmPermissionEvaluator.hasPermission() wraps cdm entities in TargetEntityStates

6 years agoref #7531 RegistrationVoter evaluates previous state on Registration.status changes
Andreas Kohlbecker [Fri, 6 Jul 2018 12:28:59 +0000 (14:28 +0200)]
ref #7531 RegistrationVoter evaluates previous state on Registration.status changes

6 years agoref #7531 intoducing TargetEntityStates to replace plain cdm enities in the permissio...
Andreas Kohlbecker [Fri, 6 Jul 2018 11:27:59 +0000 (13:27 +0200)]
ref #7531 intoducing TargetEntityStates to replace plain cdm enities in the permission voting process

6 years agoref #7533 RegistrationService with typeStatus filter
Andreas Kohlbecker [Thu, 5 Jul 2018 15:21:03 +0000 (17:21 +0200)]
ref #7533 RegistrationService with typeStatus filter

6 years agorenaming variable
Andreas Kohlbecker [Thu, 5 Jul 2018 13:42:41 +0000 (15:42 +0200)]
renaming variable

6 years agoref #7528 ref #6655 introducing RegistrationStatusTransitions to provide a matrix...
Andreas Kohlbecker [Wed, 4 Jul 2018 12:53:55 +0000 (14:53 +0200)]
ref #7528 ref #6655  introducing RegistrationStatusTransitions to provide a matrix of allowed RegistrationStatus transitions

6 years agoTeamAutoInitializer only loads members for Teams
Andreas Kohlbecker [Mon, 2 Jul 2018 13:18:12 +0000 (15:18 +0200)]
TeamAutoInitializer only loads members for Teams

6 years agoremoving unnecessary casts
Andreas Kohlbecker [Mon, 2 Jul 2018 13:16:56 +0000 (15:16 +0200)]
removing unnecessary casts

6 years agojava doc and formatting
Andreas Kohlbecker [Mon, 2 Jul 2018 13:15:31 +0000 (15:15 +0200)]
java doc and formatting

6 years agocleanup
Andreas Müller [Tue, 3 Jul 2018 10:33:23 +0000 (12:33 +0200)]
cleanup

6 years agoref #7530 3 families and dianthus import (WFO Access Import)
Andreas Müller [Tue, 3 Jul 2018 10:23:56 +0000 (12:23 +0200)]
ref #7530 3 families and dianthus import (WFO Access Import)

6 years agocleanup
Andreas Müller [Wed, 27 Jun 2018 13:08:54 +0000 (15:08 +0200)]
cleanup

6 years agoref #7525 ref #7523 allowing to use Restriction as exclude filter
Andreas Kohlbecker [Mon, 2 Jul 2018 10:50:25 +0000 (12:50 +0200)]
ref #7525 ref #7523 allowing to use Restriction as exclude filter

6 years agoref #7525 restoring all previously removed Criteria methods
Andreas Kohlbecker [Mon, 2 Jul 2018 07:13:47 +0000 (09:13 +0200)]
ref #7525 restoring all previously removed Criteria methods

6 years agoRevert "ref #7527 renaming CdmEntityDaoBase.*ByParam* methods"
Andreas Kohlbecker [Fri, 29 Jun 2018 21:05:28 +0000 (23:05 +0200)]
Revert "ref #7527 renaming CdmEntityDaoBase.*ByParam* methods"

This reverts commit 13ec97dbc071864563698e422a15ad725e28a55b.

6 years agoref #7527 renaming CdmEntityDaoBase.*ByParam* methods
Andreas Kohlbecker [Fri, 29 Jun 2018 15:24:52 +0000 (17:24 +0200)]
ref #7527 renaming CdmEntityDaoBase.*ByParam* methods

6 years agofix #7525 replacing Criteria lists by cdm Restrictions in CdmEntityDaoBase.*ByTitle...
Andreas Kohlbecker [Fri, 29 Jun 2018 12:45:29 +0000 (14:45 +0200)]
fix #7525 replacing Criteria lists by cdm Restrictions in CdmEntityDaoBase.*ByTitle() methods

6 years agoUpdating develop poms back to pre merge state
jenkins [Wed, 27 Jun 2018 14:02:25 +0000 (16:02 +0200)]
Updating develop poms back to pre merge state

6 years agoMerge branch 'master' into develop
jenkins [Wed, 27 Jun 2018 14:02:24 +0000 (16:02 +0200)]
Merge branch 'master' into develop

6 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 27 Jun 2018 14:02:23 +0000 (16:02 +0200)]
updating develop poms to master versions to avoid merge conflicts

6 years agoMerge branch 'release/5.1.0' 5.1.0
jenkins [Wed, 27 Jun 2018 14:02:19 +0000 (16:02 +0200)]
Merge branch 'release/5.1.0'

6 years agoupdating poms for branch'release/5.1.0' with non-snapshot versions origin/release/5.1.0
jenkins [Wed, 27 Jun 2018 13:43:44 +0000 (15:43 +0200)]
updating poms for branch'release/5.1.0' with non-snapshot versions

6 years agoUpdating develop poms back to pre merge state
jenkins [Wed, 27 Jun 2018 13:36:46 +0000 (15:36 +0200)]
Updating develop poms back to pre merge state

6 years agoMerge branch 'master' into develop
jenkins [Wed, 27 Jun 2018 13:36:45 +0000 (15:36 +0200)]
Merge branch 'master' into develop

6 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 27 Jun 2018 13:36:45 +0000 (15:36 +0200)]
updating develop poms to master versions to avoid merge conflicts

6 years agoMerge branch 'release/5.1.0'
jenkins [Wed, 27 Jun 2018 13:36:40 +0000 (15:36 +0200)]
Merge branch 'release/5.1.0'

6 years agoupdating poms for branch'release/5.1.0' with non-snapshot versions
jenkins [Wed, 27 Jun 2018 13:22:04 +0000 (15:22 +0200)]
updating poms for branch'release/5.1.0' with non-snapshot versions

6 years agoupdating poms for 5.2.0-SNAPSHOT development
jenkins [Wed, 27 Jun 2018 12:45:56 +0000 (14:45 +0200)]
updating poms for 5.2.0-SNAPSHOT development

6 years agofix NPE in toString of Abcd206ImportConfigurator
Katja Luther [Tue, 26 Jun 2018 14:19:50 +0000 (16:19 +0200)]
fix NPE in toString of Abcd206ImportConfigurator

6 years agoref #7508 fix lazy loading exception for inverseRepresentations
Andreas Müller [Tue, 26 Jun 2018 14:04:35 +0000 (16:04 +0200)]
ref #7508 fix lazy loading exception for inverseRepresentations

6 years agoref #7508 fix lazy loading exception for inverseRepresentations
Andreas Müller [Tue, 26 Jun 2018 13:33:42 +0000 (15:33 +0200)]
ref #7508 fix lazy loading exception for inverseRepresentations

6 years agocleanup
Andreas Müller [Tue, 26 Jun 2018 12:17:16 +0000 (14:17 +0200)]
cleanup

6 years agoref #7509 Implement service method for common parent taxon node + test origin/aggregation
Patrick Plitzner [Tue, 26 Jun 2018 09:13:00 +0000 (11:13 +0200)]
ref #7509 Implement service method for common parent taxon node + test

6 years agofixing failing suppression of inverseRepresentations
Andreas Kohlbecker [Tue, 26 Jun 2018 08:53:35 +0000 (10:53 +0200)]
fixing failing suppression of inverseRepresentations

6 years agoharmonizing controller logging
Andreas Kohlbecker [Mon, 25 Jun 2018 07:08:28 +0000 (09:08 +0200)]
harmonizing controller logging

6 years agoremove deprecated method TaxonService.getAllMedia
Andreas Müller [Mon, 25 Jun 2018 08:55:31 +0000 (10:55 +0200)]
remove deprecated method TaxonService.getAllMedia

6 years agoref #7508 fix inverse L10n term representation
Andreas Müller [Mon, 25 Jun 2018 08:36:38 +0000 (10:36 +0200)]
ref #7508 fix inverse L10n term representation

6 years agoref #7509 Add service method for common parent taxon node
Patrick Plitzner [Mon, 25 Jun 2018 08:21:04 +0000 (10:21 +0200)]
ref #7509 Add service method for common parent taxon node

6 years agoref #7508 correct handling of UUID in RepresentationBeanProcessor
Andreas Müller [Fri, 22 Jun 2018 12:34:20 +0000 (14:34 +0200)]
ref #7508 correct handling of UUID in RepresentationBeanProcessor

6 years agoexception handling for classification filter in getAcceptedTaxonFor
Andreas Müller [Fri, 22 Jun 2018 12:12:14 +0000 (14:12 +0200)]
exception handling for classification filter in getAcceptedTaxonFor

6 years agoHTTPMessage handling in TaxonController
Andreas Müller [Fri, 22 Jun 2018 12:11:12 +0000 (14:11 +0200)]
HTTPMessage handling in TaxonController

6 years agoref #7508 further fix term representation web service
Andreas Müller [Fri, 22 Jun 2018 12:09:38 +0000 (14:09 +0200)]
ref #7508 further fix term representation web service

6 years agocleanup
Andreas Müller [Fri, 22 Jun 2018 11:51:28 +0000 (13:51 +0200)]
cleanup

6 years agofix NPE in IdentifiableServiceBase.getTitleSearchStringSqlized
Andreas Müller [Fri, 22 Jun 2018 10:39:47 +0000 (12:39 +0200)]
fix NPE in  IdentifiableServiceBase.getTitleSearchStringSqlized

6 years agocleanup
Andreas Müller [Fri, 22 Jun 2018 10:39:03 +0000 (12:39 +0200)]
cleanup

6 years agoref #3560 fix checkPublished in service base class
Andreas Müller [Fri, 22 Jun 2018 10:13:47 +0000 (12:13 +0200)]
ref #3560 fix checkPublished in service base class

6 years agocleanup
Andreas Müller [Fri, 22 Jun 2018 10:12:23 +0000 (12:12 +0200)]
cleanup

6 years agoref #7439 SQLize title search for occurrences
Patrick Plitzner [Fri, 22 Jun 2018 08:23:03 +0000 (10:23 +0200)]
ref #7439 SQLize title search for occurrences

6 years agofix #7508 add language information to term representations
Andreas Müller [Fri, 22 Jun 2018 09:33:20 +0000 (11:33 +0200)]
fix #7508 add language information to term representations

6 years agocleanup
Andreas Müller [Fri, 22 Jun 2018 09:32:47 +0000 (11:32 +0200)]
cleanup

6 years agocleanup
Andreas Müller [Fri, 22 Jun 2018 08:18:28 +0000 (10:18 +0200)]
cleanup

6 years agoAllow specific messages for HTTPStatusMessage responses
Andreas Müller [Fri, 22 Jun 2018 08:13:34 +0000 (10:13 +0200)]
Allow specific messages for HTTPStatusMessage responses

6 years agoref #3560 unpublished exception handling for TaxonController.getPathFromTaxon(ToRank)
Andreas Müller [Fri, 22 Jun 2018 08:04:10 +0000 (10:04 +0200)]
ref #3560 unpublished exception handling for TaxonController.getPathFromTaxon(ToRank)

6 years agoref #3560 unpublished exception handling for TaxonController.doGetAcceptedFor
Andreas Müller [Fri, 22 Jun 2018 07:54:43 +0000 (09:54 +0200)]
ref #3560 unpublished exception handling for TaxonController.doGetAcceptedFor

6 years agocleanup
Andreas Müller [Fri, 22 Jun 2018 07:53:41 +0000 (09:53 +0200)]
cleanup

6 years agoref #7463:add subtask for saving and reindexing in moveTaxonNodes
Katja Luther [Thu, 21 Jun 2018 14:32:24 +0000 (16:32 +0200)]
ref #7463:add subtask for saving and reindexing in moveTaxonNodes

6 years agoref #3560 secured TaxonPortalController.doGetFromNameRelations and doGetToNameRelations
Andreas Müller [Thu, 21 Jun 2018 13:48:56 +0000 (15:48 +0200)]
ref #3560 secured TaxonPortalController.doGetFromNameRelations and doGetToNameRelations

6 years agoref #3560 secured TaxonPortalController.doGetMedia and doGetSubtreeMedia
Andreas Müller [Thu, 21 Jun 2018 13:38:57 +0000 (15:38 +0200)]
ref #3560 secured TaxonPortalController.doGetMedia and doGetSubtreeMedia

6 years agocleanup
Andreas Müller [Thu, 21 Jun 2018 12:26:12 +0000 (14:26 +0200)]
cleanup

6 years agotry to fix tests
Andreas Müller [Wed, 20 Jun 2018 22:35:56 +0000 (00:35 +0200)]
try to fix tests

6 years agocleanup
Andreas Müller [Wed, 20 Jun 2018 22:35:42 +0000 (00:35 +0200)]
cleanup

6 years agocleanup
Andreas Müller [Wed, 20 Jun 2018 22:17:57 +0000 (00:17 +0200)]
cleanup

6 years agocleanup
Andreas Müller [Wed, 20 Jun 2018 22:04:11 +0000 (00:04 +0200)]
cleanup

6 years agofix incorrect handling of null lists and boolean operator in NameCatalogueController
Andreas Müller [Wed, 20 Jun 2018 21:54:19 +0000 (23:54 +0200)]
fix incorrect handling of null lists and boolean operator in NameCatalogueController

6 years agocleanup
Andreas Müller [Wed, 20 Jun 2018 21:53:44 +0000 (23:53 +0200)]
cleanup

6 years agoref #7478 add test to pro parte hql search
Andreas Müller [Wed, 20 Jun 2018 20:46:18 +0000 (22:46 +0200)]
ref #7478 add test to pro parte hql search

6 years agocleanup
Andreas Müller [Wed, 20 Jun 2018 20:43:02 +0000 (22:43 +0200)]
cleanup

6 years agoremove harmonization candidates in TaxonDao and NameService
Andreas Müller [Wed, 20 Jun 2018 20:32:51 +0000 (22:32 +0200)]
remove harmonization candidates in TaxonDao and NameService

6 years agocleanup
Andreas Müller [Wed, 20 Jun 2018 20:26:15 +0000 (22:26 +0200)]
cleanup

6 years agoref #3547 cleanup and remove size of TaxonDaoHibernateImplTest.testGetTaxaByNameAndAr...
Andreas Müller [Wed, 20 Jun 2018 12:35:21 +0000 (14:35 +0200)]
ref #3547 cleanup and remove size of TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml

6 years agoimprove readability of test and fix test for common names
Andreas Müller [Wed, 20 Jun 2018 12:16:03 +0000 (14:16 +0200)]
improve readability of test and fix test for common names

6 years agofixing minor logging issues in catalogue controllers
Andreas Kohlbecker [Wed, 20 Jun 2018 12:04:12 +0000 (14:04 +0200)]
fixing minor logging issues in catalogue controllers

6 years agofixing minor logging issues in controllers
Andreas Kohlbecker [Wed, 20 Jun 2018 11:45:11 +0000 (13:45 +0200)]
fixing minor logging issues in controllers

6 years agoref #7478 simplify taxon hql search code
Andreas Müller [Wed, 20 Jun 2018 11:41:49 +0000 (13:41 +0200)]
ref #7478 simplify taxon hql search code

6 years agocleanup
Andreas Müller [Wed, 20 Jun 2018 11:41:22 +0000 (13:41 +0200)]
cleanup

6 years agodedicated private loggers per controller class for more useful logs
Andreas Kohlbecker [Wed, 20 Jun 2018 11:21:21 +0000 (13:21 +0200)]
dedicated private loggers per controller class for more useful logs

6 years agodedicated private loggers per controller class for more useful logs
Andreas Kohlbecker [Wed, 20 Jun 2018 11:19:44 +0000 (13:19 +0200)]
dedicated private loggers per controller class for more useful logs

6 years agoref #7478 some cleanup and renaming for taxon hql search
Andreas Müller [Wed, 20 Jun 2018 10:38:17 +0000 (12:38 +0200)]
ref #7478 some cleanup and renaming for taxon hql search

6 years agoref #7478 fix pro parte synonym search in taxon hql search (still untested)
Andreas Müller [Wed, 20 Jun 2018 10:05:34 +0000 (12:05 +0200)]
ref #7478 fix pro parte synonym search in taxon hql search (still untested)

6 years agocleanup
Andreas Müller [Wed, 20 Jun 2018 10:01:58 +0000 (12:01 +0200)]
cleanup

6 years agocorretly handle exception in ClassificationPortalListController
Andreas Müller [Tue, 19 Jun 2018 15:59:01 +0000 (17:59 +0200)]
corretly handle exception in ClassificationPortalListController

6 years agoref #4101 change ICNB and ICNAFP in order of enum to get a more alphabetically orient...
Andreas Müller [Tue, 19 Jun 2018 15:58:17 +0000 (17:58 +0200)]
ref #4101 change ICNB and ICNAFP in order of enum to get a more alphabetically oriented order.

6 years agosmaller changes for longrunning tasks and progress monitor
Katja Luther [Tue, 19 Jun 2018 15:32:11 +0000 (17:32 +0200)]
smaller changes for longrunning tasks and progress monitor

6 years agocancel the longrunning thread cancels moveTaxonNode and set it to rollbackOnly
Katja Luther [Tue, 19 Jun 2018 15:00:43 +0000 (17:00 +0200)]
cancel the longrunning thread cancels moveTaxonNode and set it to rollbackOnly

6 years agocheck in done() in remotingProgressMonitor whether result is already set
Katja Luther [Tue, 19 Jun 2018 14:06:55 +0000 (16:06 +0200)]
check in done() in remotingProgressMonitor whether result is already set

6 years agocleanup
Andreas Müller [Tue, 19 Jun 2018 13:25:55 +0000 (15:25 +0200)]
cleanup

6 years agoref #6321 Make OrderHint serializable
Patrick Plitzner [Mon, 18 Jun 2018 14:35:09 +0000 (16:35 +0200)]
ref #6321 Make OrderHint serializable

6 years agoprogressmonitor should be set to done by progressMonitorThread not in service methods
Katja Luther [Tue, 19 Jun 2018 11:21:47 +0000 (13:21 +0200)]
progressmonitor should be set to done by progressMonitorThread not in service methods

6 years agofix problems with progress monitor
Katja Luther [Tue, 19 Jun 2018 09:32:57 +0000 (11:32 +0200)]
fix problems with progress monitor

6 years agoremove progress monitor thread from progress monitor
Katja Luther [Tue, 19 Jun 2018 08:41:04 +0000 (10:41 +0200)]
remove progress monitor thread from progress monitor

6 years agorevert changes in cleanupThread of progressMOnitorManager
Katja Luther [Tue, 19 Jun 2018 07:06:54 +0000 (09:06 +0200)]
revert changes in cleanupThread of progressMOnitorManager

6 years agoremove monitorThread from monitor and handle it in progressMonitorManager
Katja Luther [Mon, 18 Jun 2018 12:12:39 +0000 (14:12 +0200)]
remove monitorThread from monitor and handle it in progressMonitorManager

6 years agoref #7463: do not move children of a moved node to the new parent but keep it as...
Katja Luther [Mon, 18 Jun 2018 08:00:45 +0000 (10:00 +0200)]
ref #7463: do not move children of a moved node to the new parent but keep it as children