cdmlib.git
6 years agoref #7155, ref #7198, ref #7199 make Cdm.equals final
Andreas Müller [Thu, 18 Jan 2018 09:04:44 +0000 (10:04 +0100)]
ref #7155, ref #7198, ref #7199 make Cdm.equals final

 * remove sematically equal method from VersionableEntity
 * add javadoc to explain why it should be final
 * open issue: do we really need to compare created in equals ?

6 years agoCleanup
Andreas Müller [Thu, 18 Jan 2018 09:00:37 +0000 (10:00 +0100)]
Cleanup

6 years agoadd test for cdmLight export
Katja Luther [Thu, 18 Jan 2018 07:04:28 +0000 (08:04 +0100)]
add test for cdmLight export

6 years agoadd uuidAndTitleCache method to workingSetDao and Service class
Katja Luther [Wed, 17 Jan 2018 14:50:43 +0000 (15:50 +0100)]
add uuidAndTitleCache method to workingSetDao and Service class

6 years agoref #3533: new method to get only references with dedicated author
Katja Luther [Wed, 17 Jan 2018 14:34:37 +0000 (15:34 +0100)]
ref #3533: new method to get only references with dedicated author

6 years agowrite new getUuidAndTitleCache with limit and pattern for primer
Katja Luther [Wed, 17 Jan 2018 14:30:11 +0000 (15:30 +0100)]
write new getUuidAndTitleCache with limit and pattern for primer

6 years agomove getUuidAndTitleCache methods to identifiableService
Katja Luther [Wed, 17 Jan 2018 14:29:28 +0000 (15:29 +0100)]
move getUuidAndTitleCache methods to identifiableService

6 years agomove getUuidAndTitleCache methods to identifiableDao
Katja Luther [Wed, 17 Jan 2018 14:28:12 +0000 (15:28 +0100)]
move getUuidAndTitleCache methods to identifiableDao

6 years agonull check in TeamDefaultCacheStrategy needed sometimes in UIs
Andreas Kohlbecker [Wed, 17 Jan 2018 09:36:46 +0000 (10:36 +0100)]
null check in TeamDefaultCacheStrategy needed sometimes in UIs

6 years agoadding NAMERELATIONSHIP to CdmPermissionClass
Andreas Kohlbecker [Wed, 17 Jan 2018 07:32:53 +0000 (08:32 +0100)]
adding NAMERELATIONSHIP to CdmPermissionClass

6 years agoref #2335 Revert reverted workings set services changes
Patrick Plitzner [Tue, 16 Jan 2018 13:29:46 +0000 (14:29 +0100)]
ref #2335 Revert reverted workings set services changes

6 years agoref #7175 add test for DwcA Export if includeUnpublished works
Andreas Müller [Tue, 16 Jan 2018 14:37:55 +0000 (15:37 +0100)]
ref #7175 add test for DwcA Export if includeUnpublished works

6 years agofix #7180 fix #7175 refactor (CdmLight) and implementd (DwC-A) publish flag filtering
Andreas Müller [Tue, 16 Jan 2018 13:42:07 +0000 (14:42 +0100)]
fix #7180 fix #7175  refactor (CdmLight) and implementd (DwC-A) publish flag filtering

6 years agocleanup
Andreas Müller [Tue, 16 Jan 2018 13:40:06 +0000 (14:40 +0100)]
cleanup

6 years agoref #7166 remove distributions with absent status from filter results
Andreas Müller [Tue, 16 Jan 2018 13:02:29 +0000 (14:02 +0100)]
ref #7166  remove distributions with absent status from filter results

6 years agocleanup
Andreas Müller [Tue, 16 Jan 2018 13:00:58 +0000 (14:00 +0100)]
cleanup

6 years agoref #7086, #7095 Make setter public
Patrick Plitzner [Tue, 16 Jan 2018 12:44:49 +0000 (13:44 +0100)]
ref #7086, #7095 Make setter public

6 years agoref 7166 remove and-filter for areas as long as not requried
Andreas Müller [Tue, 16 Jan 2018 12:14:37 +0000 (13:14 +0100)]
ref 7166 remove and-filter for areas as long as not requried

6 years agoref #7175, ref #7180, ref #7165, ref #7166 Adapting TaxonNodeFilter for unpublished...
Andreas Müller [Tue, 16 Jan 2018 12:04:03 +0000 (13:04 +0100)]
ref #7175, ref  #7180, ref #7165, ref #7166  Adapting TaxonNodeFilter for unpublished, minMaxRank and areas

6 years agocleanup
Andreas Müller [Mon, 15 Jan 2018 21:56:19 +0000 (22:56 +0100)]
cleanup

6 years agoref #7175 renaming onlyPublishedTaxa to includeUnpublished and commenting it
Andreas Kohlbecker [Tue, 16 Jan 2018 08:53:55 +0000 (09:53 +0100)]
ref #7175 renaming onlyPublishedTaxa to includeUnpublished and commenting it

6 years agoref #7165 Add convenience constructors for taxon node filter
Patrick Plitzner [Mon, 15 Jan 2018 06:20:46 +0000 (07:20 +0100)]
ref #7165 Add convenience constructors for taxon node filter

6 years agoref #7175 using onlyPublishedTaxa in DWC-A Export controller
Andreas Kohlbecker [Mon, 15 Jan 2018 08:53:30 +0000 (09:53 +0100)]
ref #7175 using onlyPublishedTaxa in DWC-A Export controller

6 years agoadd attr. onlyPublishedTaxa to exportConfigurator and CdmLightExport
Katja Luther [Mon, 15 Jan 2018 08:35:15 +0000 (09:35 +0100)]
add attr. onlyPublishedTaxa to exportConfigurator and CdmLightExport

6 years agoimplementing support for Group and GrantedAuthorityImpl in CdmPermissionClass
Andreas Kohlbecker [Mon, 15 Jan 2018 07:16:07 +0000 (08:16 +0100)]
implementing support for Group and GrantedAuthorityImpl in CdmPermissionClass

6 years agofix #7166 fixing test
Andreas Müller [Fri, 12 Jan 2018 11:46:33 +0000 (12:46 +0100)]
fix #7166 fixing test

6 years agofix #7166 temporarily fixing test
Patrick Plitzner [Fri, 12 Jan 2018 11:11:22 +0000 (12:11 +0100)]
fix #7166 temporarily fixing test

6 years agofix #7173 RegistrationDao methods support for sections (with test)
Andreas Kohlbecker [Fri, 12 Jan 2018 10:36:43 +0000 (11:36 +0100)]
fix #7173 RegistrationDao methods support for sections (with test)

6 years agoMerge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Fri, 12 Jan 2018 09:09:44 +0000 (10:09 +0100)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

6 years agodelete taxonNodes improved
Katja Luther [Fri, 12 Jan 2018 09:09:08 +0000 (10:09 +0100)]
delete taxonNodes improved

6 years agofix #7166 code restructuring
Patrick Plitzner [Fri, 12 Jan 2018 08:12:59 +0000 (09:12 +0100)]
fix #7166 code restructuring

6 years agofix #7165, #7166 Add ranks to reset method
Patrick Plitzner [Fri, 12 Jan 2018 08:12:28 +0000 (09:12 +0100)]
fix #7165, #7166 Add ranks to reset method

6 years agofix #7165, #7166 Add singleton constructor for rank
Patrick Plitzner [Fri, 12 Jan 2018 07:20:07 +0000 (08:20 +0100)]
fix #7165, #7166 Add singleton constructor for rank

 - remove unused methods

6 years agofix #7166 Implement area filter for TaxonNodeFilter
Patrick Plitzner [Fri, 12 Jan 2018 07:08:51 +0000 (08:08 +0100)]
fix #7166 Implement area filter for TaxonNodeFilter

6 years agoref #7165 Fix potential NPE
Patrick Plitzner [Fri, 12 Jan 2018 05:33:54 +0000 (06:33 +0100)]
ref #7165 Fix potential NPE

6 years agoref #7165 Add rank filter to TaxonNodeFilter
Patrick Plitzner [Thu, 11 Jan 2018 13:45:39 +0000 (14:45 +0100)]
ref #7165 Add rank filter to TaxonNodeFilter

 - Added JUnit test

6 years agoFix typo
Patrick Plitzner [Thu, 11 Jan 2018 11:20:13 +0000 (12:20 +0100)]
Fix typo

6 years agoMerge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Thu, 11 Jan 2018 11:01:00 +0000 (12:01 +0100)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

6 years agoadd possibility to move more than one taxon as synonym to another taxon
Katja Luther [Thu, 11 Jan 2018 11:00:28 +0000 (12:00 +0100)]
add possibility to move more than one taxon as synonym to another taxon

6 years agoFix doc of isPartial
unknown [Mon, 8 Jan 2018 11:31:17 +0000 (12:31 +0100)]
Fix doc of isPartial

6 years agoadd proparte synonym information to csv light export
Katja Luther [Mon, 8 Jan 2018 08:23:41 +0000 (09:23 +0100)]
add proparte synonym information to csv light export

6 years agoref #7094 revert remove space between initials and name in nomencl. person title...
unknown [Fri, 5 Jan 2018 13:21:18 +0000 (14:21 +0100)]
ref #7094 revert remove space between initials and name in nomencl. person title as default

6 years agoMerge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Fri, 5 Jan 2018 09:52:59 +0000 (10:52 +0100)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

6 years agoIntextReference getClass needs to be public
Katja Luther [Fri, 5 Jan 2018 09:52:22 +0000 (10:52 +0100)]
IntextReference getClass needs to be public

6 years agocleanup
unknown [Fri, 5 Jan 2018 09:20:43 +0000 (10:20 +0100)]
cleanup

6 years agoref #6965 revert remove space between initials and name in nomencl. person title...
unknown [Fri, 5 Jan 2018 09:18:02 +0000 (10:18 +0100)]
ref #6965 revert remove space between initials and name in nomencl. person title as default

6 years agocleanup
unknown [Fri, 5 Jan 2018 09:17:20 +0000 (10:17 +0100)]
cleanup

6 years agolowering loglevels
Andreas Kohlbecker [Fri, 22 Dec 2017 15:12:37 +0000 (16:12 +0100)]
lowering loglevels

6 years agoref #7150 implementing CollectionVoter and adding new default PermissionGroup 'Editor...
Andreas Kohlbecker [Fri, 22 Dec 2017 14:57:27 +0000 (15:57 +0100)]
ref #7150 implementing CollectionVoter and adding new default PermissionGroup 'EditorExtendedCreate'

6 years agoref #6867 extending the CdmPermissionClass enum and CdmAuthority support for sets
Andreas Kohlbecker [Thu, 21 Dec 2017 09:41:58 +0000 (10:41 +0100)]
ref #6867 extending the CdmPermissionClass enum and CdmAuthority support for sets

6 years agonote on prospective better solution for implementing the hibernate integrator for...
Andreas Kohlbecker [Wed, 20 Dec 2017 14:15:06 +0000 (15:15 +0100)]
note on prospective better solution for implementing the hibernate integrator for the cdmlib

6 years agoref #7121: when no vocabulary is chosen, all vocabularies are searched in NamedAreaSe...
Katja Luther [Tue, 19 Dec 2017 14:52:04 +0000 (15:52 +0100)]
ref #7121: when no vocabulary is chosen, all vocabularies are searched in NamedAreaSelection

6 years agoref #7114 fixing bug in DerivedUnitConverterIntegrationTest and NPE in DerivedUnitCon...
Andreas Kohlbecker [Mon, 18 Dec 2017 15:19:18 +0000 (16:19 +0100)]
ref #7114 fixing bug in DerivedUnitConverterIntegrationTest and NPE in DerivedUnitConverter

6 years agoref #7114 fixing delete problems in DerivedUnitConverter and adding according test
Andreas Kohlbecker [Mon, 18 Dec 2017 14:22:47 +0000 (15:22 +0100)]
ref #7114 fixing delete problems in DerivedUnitConverter and adding according test

6 years agoref #7114 fixing probelms of test in suite (relates also to ref #7138)
Andreas Kohlbecker [Mon, 18 Dec 2017 10:56:23 +0000 (11:56 +0100)]
ref #7114 fixing probelms of test in suite (relates also to ref #7138)

6 years agoref #7105 logging the calls to factory.openSession() as error
Andreas Kohlbecker [Mon, 18 Dec 2017 10:54:11 +0000 (11:54 +0100)]
ref #7105 logging the calls to factory.openSession() as error

6 years agofix NPE in cloneClassification
Katja Luther [Mon, 18 Dec 2017 10:54:39 +0000 (11:54 +0100)]
fix NPE in cloneClassification

6 years agoremoving debug output
Andreas Kohlbecker [Fri, 15 Dec 2017 13:48:51 +0000 (14:48 +0100)]
removing debug output

6 years agoupdating comment to now refer to CdmRepository
Andreas Kohlbecker [Fri, 15 Dec 2017 13:48:27 +0000 (14:48 +0100)]
updating comment to now refer to CdmRepository

6 years agoignoring DerivedUnitConverterIntegrationTest instead of DerivedUnitConverterTest
Andreas Kohlbecker [Fri, 15 Dec 2017 13:47:55 +0000 (14:47 +0100)]
ignoring DerivedUnitConverterIntegrationTest instead of DerivedUnitConverterTest

6 years agofix IdentifiableServiceBaseTest
Andreas Müller [Fri, 15 Dec 2017 13:27:17 +0000 (14:27 +0100)]
fix IdentifiableServiceBaseTest

6 years agofix NumberFormatException in RegistrationIdentifierMinter
Andreas Müller [Fri, 15 Dec 2017 13:19:11 +0000 (14:19 +0100)]
fix NumberFormatException in RegistrationIdentifierMinter

6 years agoset failing tests to ignore to build cdmlib
Katja Luther [Fri, 15 Dec 2017 13:04:53 +0000 (14:04 +0100)]
set failing tests to ignore to build cdmlib

6 years agoimplement possibility to get cdmEntities by identifiers in dialogs
Katja Luther [Fri, 15 Dec 2017 12:12:35 +0000 (13:12 +0100)]
implement possibility to get cdmEntities by identifiers in dialogs

6 years agocleanup
Andreas Müller [Fri, 15 Dec 2017 10:19:50 +0000 (11:19 +0100)]
cleanup

6 years agoref #7114 DerivedUnitConverter now deletes convertion sources:
Andreas Kohlbecker [Thu, 14 Dec 2017 19:32:14 +0000 (20:32 +0100)]
ref #7114 DerivedUnitConverter now deletes convertion sources:
 - DerivedUnitConverterFactory intoduced
 - DerivedUnitConverterFactory as spring bean in all appcontexts
 - tests adapted

6 years agofixing java doc
Andreas Kohlbecker [Thu, 14 Dec 2017 15:26:25 +0000 (16:26 +0100)]
fixing java doc

6 years agoref #7114 implementing test to reproduce the issue
Andreas Kohlbecker [Thu, 14 Dec 2017 15:26:12 +0000 (16:26 +0100)]
ref #7114 implementing test to reproduce the issue

6 years agoref #6361 removing TaxonName.DTYPE and Reference.DTYPE
Andreas Kohlbecker [Thu, 14 Dec 2017 14:15:45 +0000 (15:15 +0100)]
ref #6361 removing TaxonName.DTYPE and Reference.DTYPE
  - changing dbscripts/001-cdm.h2.sql
  - adapting test data sets

6 years agobean loading priority
Andreas Kohlbecker [Thu, 14 Dec 2017 11:18:06 +0000 (12:18 +0100)]
bean loading priority

6 years agoallowing to override property files for test environments
Andreas Kohlbecker [Thu, 14 Dec 2017 11:17:47 +0000 (12:17 +0100)]
allowing to override property files for test environments

6 years agodata source bean id aka instance name now available from the Spring environment
Andreas Kohlbecker [Wed, 13 Dec 2017 16:41:15 +0000 (17:41 +0100)]
data source bean id aka instance name now available from the Spring environment

6 years agoref #7137 improvements to the RegistrationIdentifierMinter:
Andreas Kohlbecker [Wed, 13 Dec 2017 16:39:47 +0000 (17:39 +0100)]
ref #7137 improvements to the RegistrationIdentifierMinter:
  - addin getters
  - logging a warning when configuration incomplete

6 years agoref #7137 RegistrationIdentifierMinter implemented
Andreas Kohlbecker [Wed, 13 Dec 2017 14:15:03 +0000 (15:15 +0100)]
ref #7137 RegistrationIdentifierMinter implemented

6 years agoDo not add null to feature set
Patrick Plitzner [Fri, 8 Dec 2017 14:55:25 +0000 (15:55 +0100)]
Do not add null to feature set

6 years agoref #7130 enhancing filter capabilities of RegistrationService
Andreas Kohlbecker [Fri, 8 Dec 2017 14:41:19 +0000 (15:41 +0100)]
ref #7130 enhancing filter capabilities of RegistrationService
  - extending Restrictions by support for property paths

6 years agoconfiguring antrunner in lifecycle-mapping
Andreas Kohlbecker [Thu, 7 Dec 2017 15:38:17 +0000 (16:38 +0100)]
configuring antrunner in lifecycle-mapping

6 years agoref #7078: add uuidAndTitleCacheComparator to sort by rank and name
Katja Luther [Thu, 7 Dec 2017 11:03:19 +0000 (12:03 +0100)]
ref  #7078: add uuidAndTitleCacheComparator to sort by rank and name

6 years agofix #7077: when delete a typeDesignation, remove it from registration
Katja Luther [Thu, 7 Dec 2017 08:56:13 +0000 (09:56 +0100)]
fix #7077: when delete a typeDesignation, remove it from registration

6 years agoUpdating develop poms back to pre merge state
jenkins [Tue, 5 Dec 2017 15:07:31 +0000 (16:07 +0100)]
Updating develop poms back to pre merge state

6 years agoMerge branch 'master' into develop
jenkins [Tue, 5 Dec 2017 15:07:30 +0000 (16:07 +0100)]
Merge branch 'master' into develop

6 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Tue, 5 Dec 2017 15:07:29 +0000 (16:07 +0100)]
updating develop poms to master versions to avoid merge conflicts

6 years agoMerge branch 'release/4.12.0' 4.12.0
jenkins [Tue, 5 Dec 2017 15:07:25 +0000 (16:07 +0100)]
Merge branch 'release/4.12.0'

6 years agoupdating poms for branch'release/4.12.0' with non-snapshot versions
jenkins [Tue, 5 Dec 2017 14:50:24 +0000 (15:50 +0100)]
updating poms for branch'release/4.12.0' with non-snapshot versions

6 years agoupdating poms for 4.13.0-SNAPSHOT development
jenkins [Tue, 5 Dec 2017 14:18:29 +0000 (15:18 +0100)]
updating poms for 4.13.0-SNAPSHOT development

6 years agofix getUuidAndTitleCache for * origin/release/4.12.0
Katja Luther [Tue, 5 Dec 2017 13:20:20 +0000 (14:20 +0100)]
fix getUuidAndTitleCache for *

6 years agofix problem when reusing name for new taxon
Katja Luther [Tue, 5 Dec 2017 12:39:24 +0000 (13:39 +0100)]
fix problem when reusing name for new taxon

6 years agoundo unwanted changes
Andreas Müller [Tue, 5 Dec 2017 10:46:52 +0000 (11:46 +0100)]
undo unwanted changes

6 years agofix compile issue in CdmPermissionEvaluator
Andreas Müller [Tue, 5 Dec 2017 10:45:29 +0000 (11:45 +0100)]
fix compile issue in CdmPermissionEvaluator

6 years agoref #7109 fix tests for nom. valid
Andreas Müller [Tue, 5 Dec 2017 10:40:59 +0000 (11:40 +0100)]
ref #7109 fix tests for nom. valid

6 years ago#7109 rename abbrev label from nom. valid to nom. val.
Andreas Müller [Tue, 5 Dec 2017 10:04:48 +0000 (11:04 +0100)]
#7109 rename abbrev label from nom. valid to nom. val.

6 years agocleanup
Andreas Müller [Tue, 5 Dec 2017 10:03:14 +0000 (11:03 +0100)]
cleanup

6 years agodisabling most mapping in lifecycle-mapping-metadata.xml since some are obsoltete...
Andreas Kohlbecker [Mon, 4 Dec 2017 15:07:33 +0000 (16:07 +0100)]
disabling most mapping in lifecycle-mapping-metadata.xml since some are obsoltete and others are causing probelms with resoures

6 years agoadapt all tests to updated test data
Katja Luther [Mon, 4 Dec 2017 14:03:20 +0000 (15:03 +0100)]
adapt all tests to updated test data

6 years agofix delete and tests of specimen with typedesignations and gathering events
Katja Luther [Mon, 4 Dec 2017 13:44:09 +0000 (14:44 +0100)]
fix delete and tests of specimen with typedesignations and gathering events

6 years agotitleCache of the taxon is not updated when swap synonym and accepted taxon
Katja Luther [Mon, 4 Dec 2017 09:42:21 +0000 (10:42 +0100)]
titleCache of the taxon is not updated when swap synonym and accepted taxon

6 years agoadapt uuidAndTitleCache services and dao methods to search for a pattern
Katja Luther [Thu, 30 Nov 2017 10:52:46 +0000 (11:52 +0100)]
adapt uuidAndTitleCache services and dao methods to search for a pattern

6 years agocleanup
Andreas Müller [Fri, 24 Nov 2017 16:36:09 +0000 (17:36 +0100)]
cleanup

6 years agofix #7094 fix tests after removing whitespaces from nomenclatural titles of persons
Andreas Müller [Fri, 24 Nov 2017 16:35:43 +0000 (17:35 +0100)]
fix #7094 fix tests after removing whitespaces from nomenclatural titles of persons

6 years agoreset MediaUtils (was accidentally commited)
Andreas Müller [Thu, 23 Nov 2017 21:26:54 +0000 (22:26 +0100)]
reset MediaUtils (was accidentally commited)