Katja Luther [Thu, 6 Sep 2018 13:21:18 +0000 (15:21 +0200)]
minor
Katja Luther [Thu, 6 Sep 2018 13:13:41 +0000 (15:13 +0200)]
fix TypeDesignationSetManager, use values of map of typeDesignations instead of map in mapAndSort
Andreas Müller [Thu, 6 Sep 2018 13:00:27 +0000 (15:00 +0200)]
ref #7644 handle continued in getYear()
Katja Luther [Thu, 6 Sep 2018 12:41:57 +0000 (14:41 +0200)]
ref #7599: further improvement for specimenDtos
Katja Luther [Thu, 6 Sep 2018 11:36:27 +0000 (13:36 +0200)]
fix bugs in abcd import
Katja Luther [Thu, 6 Sep 2018 09:47:27 +0000 (11:47 +0200)]
fix TypeDesignationSetManager
Katja Luther [Thu, 6 Sep 2018 09:09:29 +0000 (11:09 +0200)]
getTypeDesignations in TypeDesignationSetManager should return a collection
Katja Luther [Thu, 6 Sep 2018 08:49:02 +0000 (10:49 +0200)]
move createShortCitation to ReferenceCacheStrategy
Katja Luther [Wed, 5 Sep 2018 13:03:18 +0000 (15:03 +0200)]
ref #7700: fide and parenthesis are separated separators in taggedText
Katja Luther [Wed, 5 Sep 2018 13:01:46 +0000 (15:01 +0200)]
ref #7700: use TypedesignationSetManager for creating TypeDesignationString for homotypic group in cdm light export
Katja Luther [Wed, 5 Sep 2018 12:53:26 +0000 (14:53 +0200)]
ref #7700: use TypedesignationSetManager for creating TypeDesignationString for homotypic group in cdm light export
Andreas Kohlbecker [Wed, 5 Sep 2018 07:58:39 +0000 (09:58 +0200)]
avoiding too extensive logging by commenting all hardcoded loglevels
Andreas Kohlbecker [Tue, 4 Sep 2018 13:13:56 +0000 (15:13 +0200)]
ref #7600 implementing setAnnotations()
Andreas Müller [Tue, 4 Sep 2018 11:49:34 +0000 (13:49 +0200)]
fix #7644 fix failing test in parser and add "continued" parsing to all relevant patterns
Andreas Kohlbecker [Tue, 4 Sep 2018 08:57:30 +0000 (10:57 +0200)]
ref #7666 NARROW NO-BREAK in UTF8 class
Andreas Müller [Tue, 4 Sep 2018 08:22:56 +0000 (10:22 +0200)]
ref #7644 some further fine tuning on setting CONTINUED/end date in TimePeriod and some cleanup
Andreas Müller [Tue, 4 Sep 2018 07:53:30 +0000 (09:53 +0200)]
ref #7644 implement "continued" in TimePeriod, still missing for most of the formats in parser
Andreas Kohlbecker [Tue, 4 Sep 2018 07:34:28 +0000 (09:34 +0200)]
ref #7666 adding NARROW NO-BREAK after doubtful marker - adapting test
Andreas Kohlbecker [Tue, 4 Sep 2018 07:13:24 +0000 (09:13 +0200)]
ref #7666 adding NARROW NO-BREAK after doubtful marker
Andreas Müller [Mon, 3 Sep 2018 20:41:07 +0000 (22:41 +0200)]
next try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller [Mon, 3 Sep 2018 20:38:05 +0000 (22:38 +0200)]
next try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller [Mon, 3 Sep 2018 19:51:46 +0000 (21:51 +0200)]
try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller [Mon, 3 Sep 2018 19:51:16 +0000 (21:51 +0200)]
test trim in Excel import column recognition
Andreas Müller [Mon, 3 Sep 2018 19:09:52 +0000 (21:09 +0200)]
cleanup
Andreas Müller [Thu, 30 Aug 2018 22:45:48 +0000 (00:45 +0200)]
cleanup
Katja Luther [Mon, 3 Sep 2018 08:47:53 +0000 (10:47 +0200)]
ref #7553: move TypeDesignationSetmanagerTest to cdmlib
Andreas Kohlbecker [Fri, 31 Aug 2018 11:03:31 +0000 (13:03 +0200)]
code cleanig
Andreas Kohlbecker [Fri, 31 Aug 2018 11:02:44 +0000 (13:02 +0200)]
code cleanig
Andreas Müller [Thu, 30 Aug 2018 21:52:06 +0000 (23:52 +0200)]
javadoc, cleanup and rename permanentCacher
Andreas Müller [Thu, 30 Aug 2018 21:49:44 +0000 (23:49 +0200)]
javadoc, cleanup and rename permanentCacher
Andreas Müller [Thu, 30 Aug 2018 21:22:44 +0000 (23:22 +0200)]
ref #7709 remove NPE
Andreas Müller [Thu, 30 Aug 2018 21:03:23 +0000 (23:03 +0200)]
ref #7709 cleanup CdmTransientEntityCacher
Andreas Müller [Thu, 30 Aug 2018 20:45:08 +0000 (22:45 +0200)]
ref #7709 revert using uuid in CdmEntityCacheKey as key part
Andreas Müller [Thu, 30 Aug 2018 20:39:59 +0000 (22:39 +0200)]
cleanup
Andreas Müller [Thu, 30 Aug 2018 20:39:35 +0000 (22:39 +0200)]
ref #7709 revert using uuid in CdmEntityCacheKey as
Andreas Müller [Thu, 30 Aug 2018 12:18:26 +0000 (14:18 +0200)]
ref #7709 javadoc
Andreas Müller [Thu, 30 Aug 2018 11:47:07 +0000 (13:47 +0200)]
fix #7709 use uuid instead of id for CdmEntityCacheKey
Andreas Müller [Thu, 30 Aug 2018 11:36:50 +0000 (13:36 +0200)]
minor
Andreas Müller [Thu, 30 Aug 2018 11:36:33 +0000 (13:36 +0200)]
ref #7709 use more generics for CdmCacher (not completed yet)
Andreas Kohlbecker [Wed, 29 Aug 2018 16:31:07 +0000 (18:31 +0200)]
ref #7702 avoiding NPE in TargetEntityStates when pervious state is null
Patrick Plitzner [Wed, 29 Aug 2018 15:12:58 +0000 (17:12 +0200)]
ref #7686 Do not use null for keys in map (JSON error)
Patrick Plitzner [Wed, 29 Aug 2018 14:34:31 +0000 (16:34 +0200)]
ref #7686 Do not ignore types without type status
Patrick Plitzner [Wed, 29 Aug 2018 14:33:52 +0000 (16:33 +0200)]
ref #7686 Use titleCache if no identifier can be found
Katja Luther [Tue, 28 Aug 2018 08:24:59 +0000 (10:24 +0200)]
ref #7694: adapt typedesignation output for cdmlight export
Andreas Müller [Mon, 27 Aug 2018 09:46:43 +0000 (11:46 +0200)]
ref# 7682 remove default value for Point.precision
Andreas Müller [Fri, 24 Aug 2018 08:25:20 +0000 (10:25 +0200)]
ref #7075 fix bugs in MediaExcelImport
Patrick Plitzner [Wed, 22 Aug 2018 08:52:30 +0000 (10:52 +0200)]
ref #7657 code refactoring
Patrick Plitzner [Wed, 22 Aug 2018 06:39:41 +0000 (08:39 +0200)]
ref #7657 Increase loading speed for matrix
Andreas Müller [Tue, 21 Aug 2018 14:05:47 +0000 (16:05 +0200)]
fix NPE in TypeDesignationSetManager.stringify(TypeDesignationSetManager.java:522)
Katja Luther [Mon, 20 Aug 2018 09:54:17 +0000 (11:54 +0200)]
fix NPE in CdmLightExport
Andreas Müller [Mon, 20 Aug 2018 10:48:46 +0000 (12:48 +0200)]
ref #7666 adapt test for new doubtful handling in formatter
Andreas Müller [Mon, 20 Aug 2018 09:52:36 +0000 (11:52 +0200)]
cleanup
Andreas Müller [Mon, 20 Aug 2018 09:52:21 +0000 (11:52 +0200)]
ref #6682 split doubtful in rel doubtful and taxon doubtful + use full authorshipCache for MAN non-authors
Andreas Müller [Fri, 17 Aug 2018 13:24:35 +0000 (15:24 +0200)]
ref #7664 adapt return type for many methods with defined typification
jenkins [Fri, 17 Aug 2018 13:23:51 +0000 (15:23 +0200)]
Updating develop poms back to pre merge state
jenkins [Fri, 17 Aug 2018 13:23:51 +0000 (15:23 +0200)]
Merge branch 'master' into develop
jenkins [Fri, 17 Aug 2018 13:23:50 +0000 (15:23 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Fri, 17 Aug 2018 13:23:46 +0000 (15:23 +0200)]
Merge branch 'release/5.2.0'
jenkins [Fri, 17 Aug 2018 13:07:54 +0000 (15:07 +0200)]
updating poms for branch'release/5.2.0' with non-snapshot versions
jenkins [Fri, 17 Aug 2018 12:17:44 +0000 (14:17 +0200)]
updating poms for 5.3.0-SNAPSHOT development
Andreas Kohlbecker [Fri, 17 Aug 2018 11:26:40 +0000 (13:26 +0200)]
ref #7578 adding missing json config entry for the generic api
Andreas Kohlbecker [Fri, 17 Aug 2018 10:06:40 +0000 (12:06 +0200)]
removing unused duplicate property PreservedSpecimenDTOs
Katja Luther [Fri, 17 Aug 2018 09:37:58 +0000 (11:37 +0200)]
fieldUnitDTO code cleaning
Andreas Kohlbecker [Fri, 17 Aug 2018 08:53:32 +0000 (10:53 +0200)]
removing merge conflict artifact from eclipse launcher
Andreas Kohlbecker [Fri, 17 Aug 2018 08:30:24 +0000 (10:30 +0200)]
cleaning merge problem info in comment
Katja Luther [Fri, 17 Aug 2018 08:44:00 +0000 (10:44 +0200)]
code cleaning
Katja Luther [Fri, 17 Aug 2018 08:33:43 +0000 (10:33 +0200)]
fix getPreservedSpecimen in fieldUnitDTO
Patrick Plitzner [Fri, 17 Aug 2018 05:31:28 +0000 (07:31 +0200)]
Add source of type aggregation to description
Patrick Plitzner [Thu, 16 Aug 2018 10:10:27 +0000 (12:10 +0200)]
Fix LazyInitializationException
Andreas Müller [Thu, 16 Aug 2018 17:09:02 +0000 (19:09 +0200)]
ref #6682 types for both directions
Andreas Müller [Thu, 16 Aug 2018 16:47:26 +0000 (18:47 +0200)]
ref #6682 try to fix failing query in TaxonDao
Andreas Müller [Thu, 16 Aug 2018 16:15:43 +0000 (18:15 +0200)]
ref #6682 try to fix failing query in TaxonDao
Andreas Müller [Thu, 16 Aug 2018 16:09:16 +0000 (18:09 +0200)]
ref #6682 revert relType DTO
Andreas Müller [Thu, 16 Aug 2018 16:03:45 +0000 (18:03 +0200)]
ref #6682 add types and deduplicateMisapplications parameter to web service
Andreas Müller [Thu, 16 Aug 2018 15:53:08 +0000 (17:53 +0200)]
ref #6682 add types and deduplicateMisapplications parameter to web service
Andreas Müller [Thu, 16 Aug 2018 15:12:30 +0000 (17:12 +0200)]
ref #6682 add typeUuid and try to fix missing type issue
Andreas Müller [Thu, 16 Aug 2018 14:15:44 +0000 (16:15 +0200)]
ref #6682 fix misapplication deduplication issues
Andreas Müller [Thu, 16 Aug 2018 13:16:30 +0000 (15:16 +0200)]
ref #6682 include doubtful
Andreas Müller [Thu, 16 Aug 2018 11:55:45 +0000 (13:55 +0200)]
ref #6682 use TaggedTextBuilder
Andreas Müller [Thu, 16 Aug 2018 10:59:58 +0000 (12:59 +0200)]
ref #6682 further fixes for taxon relationship formatting - remove sensu tags, include Invalid Designation, use ordinary term for type
Andreas Müller [Thu, 16 Aug 2018 10:17:15 +0000 (12:17 +0200)]
ref #6682 further fixes for taxon relationship formatting - fix referenced entity issues
Katja Luther [Thu, 16 Aug 2018 09:42:07 +0000 (11:42 +0200)]
Andreas Kohlbecker [Thu, 16 Aug 2018 09:39:20 +0000 (11:39 +0200)]
deproxy of entities in TaggedTextBuilder
Andreas Müller [Thu, 16 Aug 2018 06:48:06 +0000 (08:48 +0200)]
ref #6682 further fixes for taxon relationship formatting - relsec and authors
Andreas Müller [Thu, 16 Aug 2018 06:18:24 +0000 (08:18 +0200)]
ref #6682 further fixes for taxon relationship service - better separators
Andreas Müller [Wed, 15 Aug 2018 22:49:15 +0000 (00:49 +0200)]
ref #6682 further fixes for taxon relationship service
Andreas Müller [Wed, 15 Aug 2018 22:05:35 +0000 (00:05 +0200)]
ref #6682 further fixes for taxon relationship service
Andreas Müller [Wed, 15 Aug 2018 20:14:13 +0000 (22:14 +0200)]
ref #6682 fix directions for taxonRelationship service
Andreas Müller [Wed, 15 Aug 2018 20:07:36 +0000 (22:07 +0200)]
ref #6682 further fixes for taxonRelationship service
Andreas Müller [Wed, 15 Aug 2018 19:13:42 +0000 (21:13 +0200)]
ref #6682 some changes to test taxon relationship service
Andreas Müller [Wed, 15 Aug 2018 18:16:03 +0000 (20:16 +0200)]
ref #6682 adapt inverse MAN symbol in test
Andreas Müller [Wed, 15 Aug 2018 18:10:31 +0000 (20:10 +0200)]
ref #6682 adapt taxon rel type symbols in test in for MAN inverse type
Andreas Müller [Wed, 15 Aug 2018 17:30:56 +0000 (19:30 +0200)]
ref #6682 first implementation of taxon relationship formatter and web service
Andreas Müller [Wed, 15 Aug 2018 15:47:07 +0000 (17:47 +0200)]
ref #7492 handled unpublished in NameCatalogueController.doGetTaxonInformation
Andreas Müller [Wed, 15 Aug 2018 14:56:02 +0000 (16:56 +0200)]
cleanup
Andreas Müller [Tue, 14 Aug 2018 12:01:17 +0000 (14:01 +0200)]
fix non compiling code in CommonServiceImpl (works on other installations but not on mine)
Andreas Müller [Tue, 14 Aug 2018 12:00:25 +0000 (14:00 +0200)]
fix row count issue for CsvImportBase
Andreas Müller [Tue, 14 Aug 2018 12:00:01 +0000 (14:00 +0200)]
cleanup
Katja Luther [Wed, 15 Aug 2018 12:33:39 +0000 (14:33 +0200)]
adapt occurrence search to changes in derivedUnitFacade
Katja Luther [Wed, 15 Aug 2018 12:37:54 +0000 (14:37 +0200)]
adapt cdm light test