Katja Luther [Mon, 20 Jan 2020 08:46:30 +0000 (09:46 +0100)]
ref #8815: add UuidAndTitleCache methods again in taxonnodeservice - continue
Andreas Kohlbecker [Fri, 17 Jan 2020 20:19:04 +0000 (21:19 +0100)]
ref #8706 DateHeaderFilter to add Date headers to all servelet responses
Andreas Müller [Fri, 17 Jan 2020 19:25:58 +0000 (20:25 +0100)]
cleanup
Katja Luther [Fri, 17 Jan 2020 08:26:51 +0000 (09:26 +0100)]
ref #8815: add UuidAndTitleCache methods again in taxonnodeservice
Katja Luther [Thu, 16 Jan 2020 13:12:37 +0000 (14:12 +0100)]
ref #8805: add synonyms to dto for distribution editor
Katja Luther [Thu, 16 Jan 2020 10:29:17 +0000 (11:29 +0100)]
fix #8809: fix NPE for areas without level
Katja Luther [Wed, 15 Jan 2020 12:49:38 +0000 (13:49 +0100)]
adapted tests for harmonization of taxonnodeDto usage
Katja Luther [Wed, 15 Jan 2020 12:48:54 +0000 (13:48 +0100)]
merge ITaxonNodeService
Katja Luther [Wed, 15 Jan 2020 12:42:15 +0000 (13:42 +0100)]
cleanup taxonnodeDto - UuidAndTitleCache<TaxonNode>
Andreas Müller [Wed, 15 Jan 2020 10:12:00 +0000 (11:12 +0100)]
cleanup
Andreas Müller [Wed, 15 Jan 2020 10:08:55 +0000 (11:08 +0100)]
fix #8803 add per mm² to MeasurementUnit
Andreas Müller [Wed, 15 Jan 2020 10:05:15 +0000 (11:05 +0100)]
fix getPage() for deduplication
Andreas Müller [Wed, 15 Jan 2020 10:02:24 +0000 (11:02 +0100)]
cleanup
Andreas Kohlbecker [Tue, 14 Jan 2020 14:56:57 +0000 (15:56 +0100)]
fixing bugs in SwaggerIT and StaticSwaggerApiDoc
Andreas Kohlbecker [Tue, 14 Jan 2020 14:53:23 +0000 (15:53 +0100)]
fixing bug in descriptions/elementsByType/{classSimpleName} - marker filter was ignored
Andreas Kohlbecker [Tue, 14 Jan 2020 12:41:08 +0000 (13:41 +0100)]
ref #8684 fixing bean collection initialization in TaxonDaoHibernateImpl.findTaxaByName
Andreas Müller [Fri, 10 Jan 2020 13:20:06 +0000 (14:20 +0100)]
ref #1447 add StringComparator
Andreas Müller [Fri, 10 Jan 2020 11:08:41 +0000 (12:08 +0100)]
ref #1447 fix findIdenticalName function
Andreas Müller [Thu, 9 Jan 2020 12:57:30 +0000 (13:57 +0100)]
minor
Katja Luther [Thu, 9 Jan 2020 12:17:58 +0000 (13:17 +0100)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Thu, 9 Jan 2020 12:17:17 +0000 (13:17 +0100)]
smaller changes in ABCD import
Andreas Müller [Thu, 9 Jan 2020 11:53:45 +0000 (12:53 +0100)]
ref #1447 change duplicate finding of names from sec to source reference and allow >2 sources
Andreas Müller [Wed, 8 Jan 2020 12:28:57 +0000 (13:28 +0100)]
fix #8800 fix NPE in Reference.getUuidAndTitle
Andreas Müller [Tue, 7 Jan 2020 17:17:58 +0000 (18:17 +0100)]
temporarily ignore SortIndexUpdaterWrapperTest
Andreas Müller [Thu, 26 Dec 2019 18:15:00 +0000 (19:15 +0100)]
cleanup and javadoc
Katja Luther [Tue, 7 Jan 2020 10:20:56 +0000 (11:20 +0100)]
cdm light fix export of areas without level
Andreas Müller [Mon, 23 Dec 2019 08:58:00 +0000 (09:58 +0100)]
remove ignoreNull from ImportConfiguratorBase
Andreas Müller [Sun, 22 Dec 2019 22:01:16 +0000 (23:01 +0100)]
cleanup
Katja Luther [Fri, 20 Dec 2019 09:01:38 +0000 (10:01 +0100)]
ref #8782: add isDeletable to descriptionService
Andreas Müller [Thu, 19 Dec 2019 23:31:27 +0000 (00:31 +0100)]
ref #8469 support reuse of quantitative characters in subbranches
Andreas Müller [Thu, 19 Dec 2019 00:10:21 +0000 (01:10 +0100)]
cleanup
Andreas Müller [Thu, 19 Dec 2019 00:10:06 +0000 (01:10 +0100)]
ref #8469 use correct handling for removeChildNode
Andreas Müller [Wed, 18 Dec 2019 23:53:35 +0000 (00:53 +0100)]
ref #8469 add useTaxonHierarchy for PolytomousKeyGenerator
Andreas Müller [Wed, 18 Dec 2019 23:51:52 +0000 (00:51 +0100)]
ref #8469 fix remove taxon node from taxon for TaxonNode.remove()
Andreas Müller [Wed, 18 Dec 2019 23:49:03 +0000 (00:49 +0100)]
cleanup
Andreas Müller [Wed, 18 Dec 2019 12:11:23 +0000 (13:11 +0100)]
cleanup
Andreas Müller [Wed, 18 Dec 2019 12:00:45 +0000 (13:00 +0100)]
cleanup
Andreas Müller [Wed, 18 Dec 2019 12:00:27 +0000 (13:00 +0100)]
ref #8780 fix autowire issue for repository (workaround)
Andreas Müller [Wed, 18 Dec 2019 11:47:36 +0000 (12:47 +0100)]
cleanup
Andreas Müller [Wed, 18 Dec 2019 11:43:06 +0000 (12:43 +0100)]
ref #8780 test nodes recursive and generic
Andreas Müller [Wed, 18 Dec 2019 11:42:13 +0000 (12:42 +0100)]
cleanup
Andreas Müller [Wed, 18 Dec 2019 11:41:49 +0000 (12:41 +0100)]
fix ConcurrentSessionTest testdata
Andreas Müller [Wed, 18 Dec 2019 11:18:16 +0000 (12:18 +0100)]
cleanup
Andreas Müller [Wed, 18 Dec 2019 11:17:04 +0000 (12:17 +0100)]
ref #8780 reduce test dataset
Andreas Müller [Wed, 18 Dec 2019 10:59:50 +0000 (11:59 +0100)]
ref #8780 add SortIndexUpdaterWrapperTest for term nodes
Andreas Müller [Wed, 18 Dec 2019 10:58:56 +0000 (11:58 +0100)]
ref #8780 cleanup SortIndexUpdaterWrapper
Andreas Müller [Wed, 18 Dec 2019 10:58:06 +0000 (11:58 +0100)]
replace featureTreeService by termTreeService
Andreas Müller [Wed, 18 Dec 2019 10:57:07 +0000 (11:57 +0100)]
cleanup
Andreas Müller [Wed, 18 Dec 2019 08:47:40 +0000 (09:47 +0100)]
ref #8780 cleanup
Andreas Müller [Wed, 18 Dec 2019 08:47:16 +0000 (09:47 +0100)]
fix #8780 fix term node sortindex updater (TermNode->TermRelation)
Andreas Müller [Wed, 18 Dec 2019 08:36:45 +0000 (09:36 +0100)]
cleanup
Andreas Müller [Wed, 18 Dec 2019 08:26:38 +0000 (09:26 +0100)]
cleanup
Andreas Kohlbecker [Mon, 16 Dec 2019 15:32:44 +0000 (16:32 +0100)]
fix #8770 responding with http code 404 in case name uuid is not found
Katja Luther [Mon, 16 Dec 2019 08:25:37 +0000 (09:25 +0100)]
rename ExternalNameIdentifier to ExternalIdentifier
Patrick Plitzner [Fri, 13 Dec 2019 14:21:56 +0000 (15:21 +0100)]
ref #8477 Check if duplicates are allowed before adding terms to trees
Andreas Kohlbecker [Fri, 13 Dec 2019 11:32:21 +0000 (12:32 +0100)]
fixing ClassCastException in CdmLinkSource for taxa
Patrick Plitzner [Fri, 13 Dec 2019 11:16:43 +0000 (12:16 +0100)]
ref #8477 Check if duplicates are allowed before adding terms to trees
Katja Luther [Fri, 13 Dec 2019 11:30:54 +0000 (12:30 +0100)]
fix abcd import when gathering date of associated unit is null
Andreas Müller [Fri, 13 Dec 2019 11:21:48 +0000 (12:21 +0100)]
make all MAN uuids public
Andreas Müller [Fri, 13 Dec 2019 11:21:21 +0000 (12:21 +0100)]
remove unneccary instanceof
Katja Luther [Fri, 13 Dec 2019 10:37:25 +0000 (11:37 +0100)]
fix abcd import when gathering date of associated unit is null
Patrick Plitzner [Thu, 12 Dec 2019 13:45:06 +0000 (14:45 +0100)]
ref #8313 Return a collection of strings for display value
Patrick Plitzner [Wed, 11 Dec 2019 17:46:53 +0000 (18:46 +0100)]
ref #8736 minor performance improvement when adding specimens to matrix
Patrick Plitzner [Wed, 11 Dec 2019 17:19:34 +0000 (18:19 +0100)]
fix #8736 Fix LIE when adding specimens to matrix
Andreas Müller [Mon, 9 Dec 2019 23:13:11 +0000 (00:13 +0100)]
ref #8679 handle null values in missing values correctly
Andreas Müller [Mon, 9 Dec 2019 21:43:41 +0000 (22:43 +0100)]
cleanup
Andreas Müller [Mon, 9 Dec 2019 20:55:57 +0000 (21:55 +0100)]
ref #8679 fix structured desc aggregation for missing values and min/max only values
Andreas Müller [Mon, 9 Dec 2019 17:13:23 +0000 (18:13 +0100)]
cleanup
Andreas Müller [Mon, 9 Dec 2019 16:02:53 +0000 (17:02 +0100)]
add comment that volumes with dot are maybe handled incorrectly
Andreas Müller [Mon, 9 Dec 2019 16:01:50 +0000 (17:01 +0100)]
cleanup
Andreas Müller [Mon, 9 Dec 2019 16:01:11 +0000 (17:01 +0100)]
add Ko and Se to BerlinModelTransformer for PESI
Andreas Müller [Mon, 9 Dec 2019 15:20:15 +0000 (16:20 +0100)]
remove duplicated call of getTitleWithoutYearAndAuthorGeneric
Andreas Müller [Mon, 9 Dec 2019 15:13:33 +0000 (16:13 +0100)]
cleanup
Andreas Müller [Sat, 7 Dec 2019 08:57:21 +0000 (09:57 +0100)]
ref #8679 add done() to monitoring if unexpected exception occurred.
Andreas Müller [Sat, 7 Dec 2019 08:56:06 +0000 (09:56 +0100)]
add getNameCache(name, tagRules) to INameCacheStrategy
Katja Luther [Thu, 5 Dec 2019 14:36:59 +0000 (15:36 +0100)]
fix missing type designations of synonyms on specimen page
Andreas Müller [Thu, 5 Dec 2019 13:57:50 +0000 (14:57 +0100)]
ref #8679 top level error handling and renaming aggregation methods
Andreas Müller [Thu, 5 Dec 2019 13:36:35 +0000 (14:36 +0100)]
ref #8679 try to fix progress tasks and percentage not showing up
Andreas Müller [Thu, 5 Dec 2019 13:35:42 +0000 (14:35 +0100)]
cleanup
pplitzner [Thu, 5 Dec 2019 07:20:13 +0000 (08:20 +0100)]
ref #8679 Add test for incomplete categorical data
Patrick Plitzner [Wed, 4 Dec 2019 16:58:33 +0000 (17:58 +0100)]
Fix gcTime calculation
Patrick Plitzner [Wed, 4 Dec 2019 16:58:22 +0000 (17:58 +0100)]
ref #8679 Add cancel points for aggregation progress monitor
Patrick Plitzner [Wed, 4 Dec 2019 16:58:02 +0000 (17:58 +0100)]
ref #8679 Filter out cloned specimen descriptions
Andreas Müller [Wed, 4 Dec 2019 13:37:34 +0000 (14:37 +0100)]
fix compile error
Andreas Müller [Wed, 4 Dec 2019 13:07:08 +0000 (14:07 +0100)]
ref #8679 rename supports fields and make public
Andreas Müller [Wed, 4 Dec 2019 13:01:44 +0000 (14:01 +0100)]
make misappliedName uuid public (needed for PESI)
Andreas Müller [Wed, 4 Dec 2019 13:01:02 +0000 (14:01 +0100)]
ref #8679 let AggregationMode and AggregationSourceMode implement IKeyTerm and implement some list methods
Andreas Müller [Wed, 4 Dec 2019 12:19:55 +0000 (13:19 +0100)]
ref #8679 move aggregation modes to own class file
Katja Luther [Wed, 4 Dec 2019 10:48:05 +0000 (11:48 +0100)]
ref #8677: getNamedAreaDTO
Katja Luther [Wed, 4 Dec 2019 10:46:10 +0000 (11:46 +0100)]
ref #8677: getNamedAreaDTO
Patrick Plitzner [Wed, 4 Dec 2019 10:18:06 +0000 (11:18 +0100)]
ref #8450 Fix quantitative data + add test
Katja Luther [Wed, 4 Dec 2019 08:36:55 +0000 (09:36 +0100)]
add left join for level in ternmDto sql query
Katja Luther [Tue, 3 Dec 2019 08:57:39 +0000 (09:57 +0100)]
fix cdmlight export test
Patrick Plitzner [Tue, 3 Dec 2019 16:31:05 +0000 (17:31 +0100)]
ref #8450 Set max to min if max null and vica versa
- static method
Patrick Plitzner [Tue, 3 Dec 2019 16:28:00 +0000 (17:28 +0100)]
ref #8450 Set max to min if max null and vica versa
Andreas Müller [Tue, 3 Dec 2019 15:33:41 +0000 (16:33 +0100)]
set monitor methods to protected in DescriptionAggregationBase
Patrick Plitzner [Tue, 3 Dec 2019 15:28:56 +0000 (16:28 +0100)]
ref #8679 Add sources to aggregated description
- within taxon: specimen description
- parent taxon: aggregated taxon description
Andreas Müller [Tue, 3 Dec 2019 12:48:54 +0000 (13:48 +0100)]
ref #8472 remove final links to old MarkerType.COMPUTED handling
Andreas Müller [Tue, 3 Dec 2019 12:06:24 +0000 (13:06 +0100)]
ref #8738 , ref #8702 , ref #8468 last changes for 5.12 update script
Andreas Müller [Mon, 2 Dec 2019 16:32:16 +0000 (17:32 +0100)]
cleanup