cdmlib.git
5 months agoref #10446 improve Wfo Classification Export and adapt tests (still ignored)
Andreas Müller [Sun, 28 Jan 2024 09:16:54 +0000 (10:16 +0100)]
ref #10446 improve Wfo Classification Export and adapt tests (still ignored)

5 months agoref #10324 update childrenCount correctly in Cdm2CdmImportBase
Andreas Müller [Sun, 28 Jan 2024 09:13:19 +0000 (10:13 +0100)]
ref #10324 update childrenCount correctly in Cdm2CdmImportBase

5 months agofix subgenus abbreviation in test data
Andreas Müller [Fri, 26 Jan 2024 22:53:25 +0000 (23:53 +0100)]
fix subgenus abbreviation in test data

5 months agoref #10446 fix WfoClassificationExport and add test class (still ignored as tests...
Andreas Müller [Fri, 26 Jan 2024 17:15:55 +0000 (18:15 +0100)]
ref #10446 fix WfoClassificationExport and add test class (still ignored as tests need to be adapted) (cont.)

5 months agoref #10446 fix WfoClassificationExport and add test class (still ignored as tests...
Andreas Müller [Fri, 26 Jan 2024 16:25:22 +0000 (17:25 +0100)]
ref #10446 fix WfoClassificationExport and add test class (still ignored as tests need to be adapted)

5 months agoref #10400, ref #10459 adapt binder
Andreas Müller [Fri, 26 Jan 2024 11:44:58 +0000 (12:44 +0100)]
ref #10400, ref #10459 adapt binder

5 months agofix #10451 try to fix test for optional fullname
Andreas Müller [Thu, 25 Jan 2024 22:06:07 +0000 (23:06 +0100)]
fix #10451 try to fix test for optional fullname

5 months agofix #10451 handle optional fullname in ColDpExport
Andreas Müller [Thu, 25 Jan 2024 19:05:42 +0000 (20:05 +0100)]
fix #10451 handle optional fullname in ColDpExport

5 months agocleanup
Andreas Müller [Thu, 25 Jan 2024 18:15:37 +0000 (19:15 +0100)]
cleanup

5 months agoref #10433 add index fungorum urlPattern during term loading
Andreas Müller [Thu, 25 Jan 2024 18:15:25 +0000 (19:15 +0100)]
ref #10433 add index fungorum urlPattern during term loading

5 months agoref #10400 implemented current/preferred determination as additional assoziation...
Andreas Müller [Wed, 24 Jan 2024 13:54:01 +0000 (14:54 +0100)]
ref #10400 implemented current/preferred determination as additional assoziation type

5 months agoref #10453 remove deprecated method in MediaUriTransformationProcessor
Andreas Müller [Wed, 24 Jan 2024 09:56:52 +0000 (10:56 +0100)]
ref #10453 remove deprecated method in MediaUriTransformationProcessor

5 months agoref #10453 add additional null check for missing uri
Andreas Müller [Wed, 24 Jan 2024 09:45:51 +0000 (10:45 +0100)]
ref #10453 add additional null check for missing uri

5 months agoref #10448, #10446 remove doFactualData from WfoExportConfigurator
Andreas Müller [Tue, 23 Jan 2024 22:33:45 +0000 (23:33 +0100)]
ref #10448, #10446 remove doFactualData from WfoExportConfigurator

5 months agocleanup
Andreas Müller [Tue, 23 Jan 2024 22:02:59 +0000 (23:02 +0100)]
cleanup

5 months agofix referencing objects formatter test
Andreas Müller [Tue, 23 Jan 2024 16:59:12 +0000 (17:59 +0100)]
fix referencing objects formatter test

5 months agoref #10434 add referencing objects formatter for Registrations
Andreas Müller [Tue, 23 Jan 2024 16:42:22 +0000 (17:42 +0100)]
ref #10434 add referencing objects formatter for Registrations

5 months agocleanup
Andreas Müller [Tue, 23 Jan 2024 09:55:21 +0000 (10:55 +0100)]
cleanup

5 months agolog errors
Katja [Tue, 23 Jan 2024 08:12:46 +0000 (09:12 +0100)]
log errors

5 months agoref #10441: some more property path adaptions
Katja [Mon, 22 Jan 2024 13:24:15 +0000 (14:24 +0100)]
ref #10441: some more property path adaptions

5 months agoref #10440: differ between only cdm/server and perfer cdm/server
Katja [Mon, 22 Jan 2024 13:13:08 +0000 (14:13 +0100)]
ref #10440: differ between only cdm/server and perfer cdm/server

5 months agoref #10400 fix FindOccurrencesConfigurator default filter value
Andreas Müller [Sat, 20 Jan 2024 23:54:12 +0000 (00:54 +0100)]
ref #10400 fix FindOccurrencesConfigurator default filter value

5 months agoref #10400 use TaxonOccurrenceRelationType param in webservices
Andreas Müller [Sat, 20 Jan 2024 22:42:15 +0000 (23:42 +0100)]
ref #10400 use TaxonOccurrenceRelationType param in webservices

5 months agocleanup
Andreas Müller [Sat, 20 Jan 2024 22:41:02 +0000 (23:41 +0100)]
cleanup

5 months agoref #10400 minor javadoc
Andreas Müller [Sat, 20 Jan 2024 14:52:51 +0000 (15:52 +0100)]
ref #10400 minor javadoc

5 months agoref #10400 move TaxonOccurrenceRelationType to api
Andreas Müller [Sat, 20 Jan 2024 14:38:50 +0000 (15:38 +0100)]
ref #10400 move TaxonOccurrenceRelationType to api

5 months agoref #10400 refactor occurrenceDao for findByAssociatedTaxon and add association type...
Andreas Müller [Sat, 20 Jan 2024 14:20:05 +0000 (15:20 +0100)]
ref #10400 refactor occurrenceDao for findByAssociatedTaxon and add association type configuration param (cont.)

5 months agoref #10400 fix TypedQuery issue in TaxonNameDaoHibernateImpl.getTypeDesignationQuery()
Andreas Müller [Sat, 20 Jan 2024 10:57:36 +0000 (11:57 +0100)]
ref #10400 fix TypedQuery issue in TaxonNameDaoHibernateImpl.getTypeDesignationQuery()

5 months agoref #10400 refactor occurrenceDao for findByAssociatedTaxon and add association type...
Andreas Müller [Sat, 20 Jan 2024 00:36:16 +0000 (01:36 +0100)]
ref #10400 refactor occurrenceDao for findByAssociatedTaxon and add association type configuration param

5 months agocleanup
Andreas Müller [Fri, 19 Jan 2024 13:59:45 +0000 (14:59 +0100)]
cleanup

5 months agoref #10206 add publish flag to CdmLight and ColDP export in cdmlib
Andreas Müller [Fri, 19 Jan 2024 13:53:31 +0000 (14:53 +0100)]
ref #10206 add publish flag to CdmLight and ColDP export in cdmlib

5 months agoref #10440: save meta data preference as json
Katja [Fri, 19 Jan 2024 13:03:59 +0000 (14:03 +0100)]
ref #10440: save meta data preference as json

5 months agoref #10456: order of occurrences
Katja [Fri, 19 Jan 2024 08:43:25 +0000 (09:43 +0100)]
ref #10456: order of occurrences

5 months agoref #10441: some more propertypath adaptions
Katja [Thu, 18 Jan 2024 21:19:43 +0000 (22:19 +0100)]
ref #10441: some more propertypath adaptions

5 months agofix portal test
Katja [Thu, 18 Jan 2024 19:39:57 +0000 (20:39 +0100)]
fix portal test

5 months agoref #10334 further handle include unpublished in webservices (cont.)
Andreas Müller [Thu, 18 Jan 2024 19:10:11 +0000 (20:10 +0100)]
ref #10334 further handle include unpublished in webservices (cont.)

5 months agoref #10334 further handle include unpublished in webservices
Andreas Müller [Thu, 18 Jan 2024 19:06:56 +0000 (20:06 +0100)]
ref #10334 further handle include unpublished in webservices

5 months agocleanup OccurrenceService
Andreas Müller [Thu, 18 Jan 2024 17:38:30 +0000 (18:38 +0100)]
cleanup OccurrenceService

5 months agoref #10334 add getDistributionServiceRequestParameterString(taxonDescriptions, ...)
Andreas Müller [Thu, 18 Jan 2024 17:38:01 +0000 (18:38 +0100)]
ref #10334 add getDistributionServiceRequestParameterString(taxonDescriptions, ...)

5 months agoref #10334 remove further unused methods
Andreas Müller [Thu, 18 Jan 2024 16:41:40 +0000 (17:41 +0100)]
ref #10334 remove further unused methods

5 months agoadd typedesignations of synonyms to list of specimen dtos
Katja [Thu, 18 Jan 2024 14:28:36 +0000 (15:28 +0100)]
add typedesignations of synonyms to list of specimen dtos

5 months agoref #10334 further cleanup
Andreas Müller [Thu, 18 Jan 2024 14:01:31 +0000 (15:01 +0100)]
ref #10334 further cleanup

5 months agoref #10334 fix test
Andreas Müller [Thu, 18 Jan 2024 14:00:45 +0000 (15:00 +0100)]
ref #10334 fix test

5 months agoref #10334 remove unused description related methods and add some more includePublish...
Andreas Müller [Thu, 18 Jan 2024 13:50:17 +0000 (14:50 +0100)]
ref #10334 remove unused description related methods and add some more includePublished handling

5 months agocleanup
Andreas Müller [Thu, 18 Jan 2024 00:02:31 +0000 (01:02 +0100)]
cleanup

5 months agoref #10334 evaluate descriptionBase.publish in webservices (cont. II)
Andreas Müller [Thu, 18 Jan 2024 00:02:02 +0000 (01:02 +0100)]
ref #10334 evaluate descriptionBase.publish in webservices (cont. II)

5 months agoref #10334 evaluate descriptionBase.publish in webservices (cont.)
Andreas Müller [Wed, 17 Jan 2024 21:39:22 +0000 (22:39 +0100)]
ref #10334 evaluate descriptionBase.publish in webservices (cont.)

5 months agocleanup
Andreas Müller [Wed, 17 Jan 2024 21:39:07 +0000 (22:39 +0100)]
cleanup

5 months agoref #10334 evaluate descriptionBase.publish in webservices
Andreas Müller [Wed, 17 Jan 2024 21:36:15 +0000 (22:36 +0100)]
ref #10334 evaluate descriptionBase.publish in webservices

5 months agoref #7443 add parser for fungi and zoological names with in-authors
Andreas Müller [Wed, 17 Jan 2024 19:10:11 +0000 (20:10 +0100)]
ref #7443 add parser for fungi and zoological names with in-authors

5 months agocleanup
Andreas Müller [Wed, 17 Jan 2024 16:53:57 +0000 (17:53 +0100)]
cleanup

5 months agoref #7413 fully move in-authors to INonViralName
Andreas Müller [Wed, 17 Jan 2024 12:20:25 +0000 (13:20 +0100)]
ref #7413 fully move in-authors to INonViralName

5 months agoref #7413: move in-author methods to INonViralName
Katja Luther [Wed, 17 Jan 2024 12:03:34 +0000 (13:03 +0100)]
ref #7413: move in-author methods to INonViralName

5 months agoref #10454, ref #7781 add separator for nameUsedInSource
Andreas Müller [Wed, 17 Jan 2024 10:13:09 +0000 (11:13 +0100)]
ref #10454, ref #7781 add separator for nameUsedInSource

5 months agoref #10453: catch/log the error if makeNewMediaRepresentationsFor fails
Katja [Wed, 17 Jan 2024 10:09:17 +0000 (11:09 +0100)]
ref #10453: catch/log the error if makeNewMediaRepresentationsFor fails

5 months agoref #9500 remove ignoreDistributionStatusUndefined from DistributionInfoConfiguration...
Andreas Müller [Tue, 16 Jan 2024 23:54:17 +0000 (00:54 +0100)]
ref #9500 remove ignoreDistributionStatusUndefined from DistributionInfoConfiguration (cont.)

5 months agoref #9500 remove ignoreDistributionStatusUndefined from DistributionInfoConfiguration
Andreas Müller [Tue, 16 Jan 2024 23:42:00 +0000 (00:42 +0100)]
ref #9500 remove ignoreDistributionStatusUndefined from DistributionInfoConfiguration

5 months agoref #9500, ref #10330 fix status tree handling
Andreas Müller [Tue, 16 Jan 2024 22:27:49 +0000 (23:27 +0100)]
ref #9500, ref #10330 fix status tree handling

5 months agocleanup
Andreas Müller [Tue, 16 Jan 2024 22:27:15 +0000 (23:27 +0100)]
cleanup

5 months agoref #9500, ref #10330 implement status tree handling in distribution info webservices
Andreas Müller [Tue, 16 Jan 2024 21:37:59 +0000 (22:37 +0100)]
ref #9500, ref #10330 implement status tree handling in distribution info webservices

5 months agoref #7443, ref #10432 add formatting and partly parsing for name in-authors
Andreas Müller [Tue, 16 Jan 2024 12:28:36 +0000 (13:28 +0100)]
ref #7443, ref #10432 add formatting and partly parsing for name in-authors

5 months agoref #10447 rename HomotypicalGroupComparator-> HomotypicGroupComparator (cont.)
Andreas Müller [Fri, 12 Jan 2024 16:48:47 +0000 (17:48 +0100)]
ref #10447 rename HomotypicalGroupComparator-> HomotypicGroupComparator (cont.)

5 months agoref #10449 allow filtering out synonyms in list imports
Andreas Müller [Fri, 12 Jan 2024 16:10:17 +0000 (17:10 +0100)]
ref #10449 allow filtering out synonyms in list imports

5 months agoref #10447 rename HomotypicalGroupComparator-> HomotypicGroupComparator
Andreas Müller [Fri, 12 Jan 2024 16:08:09 +0000 (17:08 +0100)]
ref #10447 rename HomotypicalGroupComparator-> HomotypicGroupComparator

5 months agoref #10410: change pref pred description
Katja Luther [Fri, 12 Jan 2024 09:26:17 +0000 (10:26 +0100)]
ref #10410: change pref pred description

5 months agoref #10441: adapt propertypath for names
Katja [Thu, 11 Jan 2024 14:14:23 +0000 (15:14 +0100)]
ref #10441: adapt propertypath for names

5 months agohandle children count in Cdm2CdmImport correctly
Andreas Müller [Tue, 9 Jan 2024 21:52:24 +0000 (22:52 +0100)]
handle children count in Cdm2CdmImport correctly

5 months agojavadoc
Andreas Müller [Tue, 9 Jan 2024 21:51:05 +0000 (22:51 +0100)]
javadoc

5 months agoref #10271 avoid NPE for media without mediaCreated
Andreas Müller [Tue, 9 Jan 2024 21:50:11 +0000 (22:50 +0100)]
ref #10271 avoid NPE for media without mediaCreated

5 months agoref #10271 add error handling and avoid NPE for unhandled name relationship types
Andreas Müller [Tue, 9 Jan 2024 21:47:05 +0000 (22:47 +0100)]
ref #10271 add error handling and avoid NPE for unhandled name relationship types

5 months agoref #10440: use mapping in readResourceMetadataFiltered
Katja [Tue, 9 Jan 2024 10:14:24 +0000 (11:14 +0100)]
ref #10440: use mapping in readResourceMetadataFiltered

5 months agoref #10440: code cleaning
Katja [Mon, 8 Jan 2024 14:07:27 +0000 (15:07 +0100)]
ref #10440: code cleaning

5 months agoref #10440: adapt manifest creation to portal pref of meta data source
Katja [Mon, 8 Jan 2024 14:05:00 +0000 (15:05 +0100)]
ref #10440: adapt manifest creation to portal pref of meta data source

5 months agoref #10446 add isOrthographicVariant(), is Rejected() and isConserverd() to name...
Andreas Müller [Sun, 7 Jan 2024 21:51:04 +0000 (22:51 +0100)]
ref #10446  add isOrthographicVariant(), is Rejected() and isConserverd() to name interface

6 months agominor
Andreas Müller [Fri, 5 Jan 2024 11:27:44 +0000 (12:27 +0100)]
minor

6 months agoimprove logging in DwC-A export
Andreas Müller [Fri, 5 Jan 2024 11:25:48 +0000 (12:25 +0100)]
improve logging in DwC-A export

6 months agoavoid NPE in deleteName
Andreas Müller [Fri, 5 Jan 2024 11:24:44 +0000 (12:24 +0100)]
avoid NPE in deleteName

6 months agoref #10446 first unchecked version of WFO DwC-A classification export
Andreas Müller [Fri, 5 Jan 2024 11:24:20 +0000 (12:24 +0100)]
ref #10446 first unchecked version of WFO DwC-A classification export

6 months agocleanup
Andreas Müller [Mon, 4 Dec 2023 16:42:24 +0000 (17:42 +0100)]
cleanup

6 months agoremove warning for deprecation in Person.updateXXXCache
Andreas Müller [Thu, 30 Nov 2023 10:04:55 +0000 (11:04 +0100)]
remove warning for deprecation in Person.updateXXXCache

6 months agoref #10440: fix test
Katja [Wed, 20 Dec 2023 13:22:48 +0000 (14:22 +0100)]
ref #10440: fix test

6 months agoref #10440: adapt test because of moving conversion and deduplication
Katja [Wed, 20 Dec 2023 12:32:55 +0000 (13:32 +0100)]
ref #10440: adapt test because of moving conversion and deduplication

6 months agoref #10440: some changes to fix the tests
Katja [Wed, 20 Dec 2023 10:59:06 +0000 (11:59 +0100)]
ref #10440: some changes to fix the tests

6 months agoref #10440: using metadata mapping and activating in pref - continue
Katja [Tue, 19 Dec 2023 15:41:25 +0000 (16:41 +0100)]
ref #10440: using metadata mapping and activating in pref - continue

6 months agoref #10440: use mapping in metadata preference
Katja [Tue, 19 Dec 2023 15:32:27 +0000 (16:32 +0100)]
ref #10440: use mapping in metadata preference

6 months agoref 10440: add metaData mapping for coryright notice
Katja [Mon, 18 Dec 2023 09:10:25 +0000 (10:10 +0100)]
ref 10440: add metaData mapping for coryright notice

6 months agoref #10441: adapt property path also for Taxon-/DescriptionController
Katja [Fri, 15 Dec 2023 13:46:52 +0000 (14:46 +0100)]
ref #10441: adapt property path also for Taxon-/DescriptionController

6 months agoref #10441: adapt property path for termlistcontroller
Katja [Fri, 15 Dec 2023 09:11:43 +0000 (10:11 +0100)]
ref #10441: adapt property path for termlistcontroller

6 months agoref #10441: adapt property path
Katja [Thu, 14 Dec 2023 08:09:45 +0000 (09:09 +0100)]
ref #10441: adapt property path

6 months agoref #10440: add meta data pref to ws call and manifest composer
Katja [Wed, 13 Dec 2023 14:44:45 +0000 (15:44 +0100)]
ref #10440: add meta data pref to ws call and manifest composer

6 months agoref #10441: revert some changes
Katja [Tue, 12 Dec 2023 09:47:24 +0000 (10:47 +0100)]
ref #10441: revert some changes

6 months agoref #10441: code cleaning
Katja [Tue, 12 Dec 2023 08:49:11 +0000 (09:49 +0100)]
ref #10441: code cleaning

6 months agoref #10441: revert workaround
Katja [Tue, 12 Dec 2023 08:39:53 +0000 (09:39 +0100)]
ref #10441: revert workaround

6 months agoref #10441: add property path to VocabularyController
Katja [Tue, 12 Dec 2023 08:37:45 +0000 (09:37 +0100)]
ref #10441: add property path to VocabularyController

6 months agoref #10441: check for initialization of includes
Katja [Mon, 11 Dec 2023 11:48:04 +0000 (12:48 +0100)]
ref #10441: check for initialization of includes

6 months agoref #10440: fix meta data problems
Katja [Fri, 8 Dec 2023 13:08:38 +0000 (14:08 +0100)]
ref #10440: fix meta data problems

7 months agoadd modifiers and modifyingText to init strategy
Katja [Wed, 6 Dec 2023 11:09:35 +0000 (12:09 +0100)]
add modifiers and modifyingText to init strategy

7 months agoref #7413: add in-author to INonViralName
Katja Luther [Mon, 4 Dec 2023 12:43:12 +0000 (13:43 +0100)]
ref #7413: add in-author to INonViralName

7 months agofix exception caused by PermissionDeniedException moved
Andreas Müller [Thu, 30 Nov 2023 08:53:02 +0000 (09:53 +0100)]
fix exception caused by PermissionDeniedException moved

7 months agoFix exception string for PermissionDeniedException(Authentication, Role[])
Andreas Müller [Wed, 29 Nov 2023 21:07:39 +0000 (22:07 +0100)]
Fix exception string for PermissionDeniedException(Authentication, Role[])