Andreas Müller [Fri, 22 Sep 2023 13:12:29 +0000 (15:12 +0200)]
ref #9771 use system tmp directory for other repository and split graph test
Andreas Müller [Fri, 22 Sep 2023 10:06:07 +0000 (12:06 +0200)]
ref #10178 replace DoubleResult by SingleNameMatchingResult
Andreas Müller [Fri, 22 Sep 2023 09:41:25 +0000 (11:41 +0200)]
ref #10178 some comments and code cleaning for name matching
Andreas Müller [Fri, 22 Sep 2023 09:39:25 +0000 (11:39 +0200)]
clean up line endings etc.
Andreas Müller [Thu, 21 Sep 2023 20:10:09 +0000 (22:10 +0200)]
ref #9771 fix configurator setting for adding terms in Cdm2CdmVocabularyImportTest
Andreas Müller [Thu, 21 Sep 2023 19:55:31 +0000 (21:55 +0200)]
ref #9771 fix configurator setting in Cdm2CdmVocabularyImportTest
Andreas Müller [Thu, 21 Sep 2023 13:35:32 +0000 (15:35 +0200)]
ref #9771 , ref #10133 implement add missing terms for term trees
Andreas Müller [Thu, 21 Sep 2023 13:34:17 +0000 (15:34 +0200)]
ref #9771 , ref #10133 allow configuation for addMissingTerms
Andreas Müller [Thu, 21 Sep 2023 13:33:10 +0000 (15:33 +0200)]
ref #9771 , ref #10133 allow importing graphs with partial vocabularies (javadoc)
Andreas Müller [Thu, 21 Sep 2023 13:22:41 +0000 (15:22 +0200)]
cleanup
Andreas Müller [Thu, 21 Sep 2023 13:15:06 +0000 (15:15 +0200)]
ref #10401 adapt NomenclaturalStatusTypeIczn terms in csv
Andreas Müller [Thu, 21 Sep 2023 12:48:03 +0000 (14:48 +0200)]
update labels for some statistical measures (cont.)
Andreas Müller [Thu, 21 Sep 2023 12:40:55 +0000 (14:40 +0200)]
update labels for some statistical measures
Andreas Müller [Thu, 21 Sep 2023 08:36:48 +0000 (10:36 +0200)]
ref #10324 add filter for heterotypic synonyms
Andreas Müller [Thu, 21 Sep 2023 08:35:54 +0000 (10:35 +0200)]
ref #10324 fix mapping for nomenclatural status
Andreas Müller [Thu, 21 Sep 2023 08:35:03 +0000 (10:35 +0200)]
ref #10324 add source to endemics
Andreas Müller [Thu, 21 Sep 2023 08:18:59 +0000 (10:18 +0200)]
cleanup
Katja Luther [Tue, 12 Sep 2023 11:45:00 +0000 (13:45 +0200)]
ref #10393: fix handling of specimen determined to synonyms in two
classifications
Andreas Müller [Thu, 7 Sep 2023 16:52:18 +0000 (18:52 +0200)]
ref #10385 add transliteration to coldp export
jenkins [Thu, 7 Sep 2023 15:30:28 +0000 (17:30 +0200)]
Updating develop poms back to pre merge state
jenkins [Thu, 7 Sep 2023 15:30:27 +0000 (17:30 +0200)]
Merge branch 'master' into develop
jenkins [Thu, 7 Sep 2023 15:30:26 +0000 (17:30 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 7 Sep 2023 15:30:19 +0000 (17:30 +0200)]
Merge branch 'release/5.40.0'
jenkins [Thu, 7 Sep 2023 15:17:42 +0000 (17:17 +0200)]
updating poms for branch'release/5.40.0' with non-snapshot versions
jenkins [Thu, 7 Sep 2023 14:19:36 +0000 (16:19 +0200)]
updating poms for 5.41.0-SNAPSHOT development
Andreas Müller [Thu, 7 Sep 2023 14:17:12 +0000 (16:17 +0200)]
cleanup
Katja Luther [Thu, 7 Sep 2023 10:34:59 +0000 (12:34 +0200)]
externally managed needs to be set before rootNodeDto
Katja Luther [Wed, 6 Sep 2023 20:18:41 +0000 (22:18 +0200)]
minor
Katja Luther [Wed, 6 Sep 2023 20:17:41 +0000 (22:17 +0200)]
add tree attributes to nodeDto
Belen Escobari [Wed, 6 Sep 2023 12:00:16 +0000 (14:00 +0200)]
ref #10178: matching names including infraspecific.
Andreas Müller [Wed, 6 Sep 2023 11:48:18 +0000 (13:48 +0200)]
cleanup
Andreas Müller [Wed, 6 Sep 2023 11:47:40 +0000 (13:47 +0200)]
ref #10384 move useClassification to more specific configurators where needed
Andreas Müller [Wed, 6 Sep 2023 11:35:12 +0000 (13:35 +0200)]
cleanup
Andreas Müller [Wed, 6 Sep 2023 11:35:12 +0000 (13:35 +0200)]
cleanup
Katja [Wed, 6 Sep 2023 07:56:16 +0000 (09:56 +0200)]
ref #10382: remove '-' from collectorsstring
Andreas Müller [Tue, 5 Sep 2023 17:05:44 +0000 (19:05 +0200)]
cleanup
Andreas Müller [Tue, 5 Sep 2023 17:05:11 +0000 (19:05 +0200)]
fix #10379 deduplication of herbarium code removed in DerivedUnitFacadeCacheStrategy
Andreas Müller [Tue, 5 Sep 2023 09:16:59 +0000 (11:16 +0200)]
ref #10271 remove unnecessary parameters from COL-DP export configurator (cont.) and set createZipFile to true
Andreas Müller [Tue, 5 Sep 2023 08:57:37 +0000 (10:57 +0200)]
ref #10271 remove unnecessary parameters from COL-DP export configurator
Andreas Müller [Tue, 5 Sep 2023 08:43:45 +0000 (10:43 +0200)]
add Serializable to export transformers
Andreas Müller [Tue, 5 Sep 2023 08:38:27 +0000 (10:38 +0200)]
cleanup
Katja Luther [Mon, 4 Sep 2023 08:40:30 +0000 (10:40 +0200)]
ref #10271: Transfomer needs to be serializable
Andreas Müller [Fri, 1 Sep 2023 20:27:17 +0000 (22:27 +0200)]
ref #10133 add size state tree to ontology
Katja Luther [Thu, 31 Aug 2023 14:27:25 +0000 (16:27 +0200)]
ref #10389: correct handling for quantitative data with several values
Andreas Müller [Wed, 30 Aug 2023 16:18:18 +0000 (18:18 +0200)]
ref #10133 fix ontology uuids for fusion and width
Andreas Müller [Tue, 29 Aug 2023 14:20:13 +0000 (16:20 +0200)]
fix #10385 add transliteration field to common names
Andreas Müller [Tue, 29 Aug 2023 11:35:08 +0000 (13:35 +0200)]
cleanup
Katja Luther [Mon, 28 Aug 2023 08:10:04 +0000 (10:10 +0200)]
fix failing tests because of BiNHum biocase provider, using herbar as
provider
Belen Escobari [Wed, 23 Aug 2023 12:40:21 +0000 (14:40 +0200)]
ref #10377: matching names including infrageneric epith. Tests
Katja [Wed, 23 Aug 2023 10:10:48 +0000 (12:10 +0200)]
adapt abbrevLabel of subgenus to subg.
Belen Escobari [Mon, 21 Aug 2023 13:43:55 +0000 (15:43 +0200)]
ref #10377: matching names including infrageneric epith
Katja Luther [Wed, 16 Aug 2023 12:54:50 +0000 (14:54 +0200)]
cleanup
Katja Luther [Wed, 16 Aug 2023 12:54:09 +0000 (14:54 +0200)]
adapt getSupportedStatesForFeature to the possibility to use a term tree
Belen Escobari [Mon, 14 Aug 2023 12:03:02 +0000 (14:03 +0200)]
Debug not responding
Katja Luther [Fri, 11 Aug 2023 14:06:58 +0000 (16:06 +0200)]
ref #10377: adapt saveCharacterNodeDtoList to the possibility that
recommendedstates can come from trees or vocabularies
Andreas Müller [Mon, 31 Jul 2023 10:50:37 +0000 (12:50 +0200)]
fix warning message for derived units without field units
Andreas Müller [Mon, 24 Jul 2023 20:53:51 +0000 (22:53 +0200)]
cleanup
Andreas Müller [Fri, 21 Jul 2023 12:35:09 +0000 (14:35 +0200)]
ref #10271 further data types for COL-DP and clean up COL-DB and CDM light
Andreas Müller [Thu, 20 Jul 2023 14:04:15 +0000 (16:04 +0200)]
ref #10271 add common base classes for CDM light and COL-DP export
Andreas Müller [Thu, 20 Jul 2023 12:28:47 +0000 (14:28 +0200)]
ref #10271 fix ClearDB datasets (cont. III)
Andreas Müller [Thu, 20 Jul 2023 08:30:52 +0000 (10:30 +0200)]
ref #10271 fix ClearDB datasets (cont. II)
Andreas Müller [Thu, 20 Jul 2023 07:51:09 +0000 (09:51 +0200)]
cleanup
Andreas Müller [Thu, 20 Jul 2023 07:41:39 +0000 (09:41 +0200)]
ref #10271 fix ClearDB datasets (cont.)
Andreas Müller [Thu, 20 Jul 2023 07:21:39 +0000 (09:21 +0200)]
ref #10271 fix ClearDB datasets
Andreas Müller [Wed, 19 Jul 2023 21:07:53 +0000 (23:07 +0200)]
ref #10271 first incomplete version of COL-DP export
Andreas Müller [Wed, 19 Jul 2023 19:54:11 +0000 (21:54 +0200)]
cleanup
Andreas Müller [Mon, 17 Jul 2023 12:00:38 +0000 (14:00 +0200)]
cleanup
Andreas Müller [Mon, 17 Jul 2023 11:50:52 +0000 (13:50 +0200)]
cleanup
Belen Escobari [Mon, 17 Jul 2023 10:38:19 +0000 (12:38 +0200)]
remaining fix for dataset.dtd
Belen Escobari [Mon, 17 Jul 2023 10:31:18 +0000 (12:31 +0200)]
cleanup
Andreas Müller [Sun, 16 Jul 2023 16:44:42 +0000 (18:44 +0200)]
cleanup
Andreas Müller [Fri, 14 Jul 2023 16:12:11 +0000 (18:12 +0200)]
fix some XML Validations
Belen Escobari [Thu, 13 Jul 2023 15:13:10 +0000 (17:13 +0200)]
ref #10178 Name Matching Service classes implemented
Andreas Müller [Thu, 13 Jul 2023 08:51:08 +0000 (10:51 +0200)]
cleanup
Andreas Müller [Thu, 13 Jul 2023 08:43:17 +0000 (10:43 +0200)]
ref #10324 allow absent terms for geographic TaxonNodeFilter
Andreas Müller [Thu, 13 Jul 2023 08:03:54 +0000 (10:03 +0200)]
ref #10324 fix taxonName->taxonBase propagation in Cdm2CdmImport
Andreas Müller [Thu, 13 Jul 2023 08:03:06 +0000 (10:03 +0200)]
ref #10324 add endemism handling for Cdm2CdmImport
Andreas Müller [Thu, 13 Jul 2023 07:57:19 +0000 (09:57 +0200)]
minor
Andreas Müller [Thu, 13 Jul 2023 07:56:57 +0000 (09:56 +0200)]
cleanup and add TaxonName handling to NonReferencedObjectsDeleter
Andreas Müller [Thu, 13 Jul 2023 07:54:54 +0000 (09:54 +0200)]
cleanup and add explanations for dummies in cdmlight
Katja Luther [Wed, 12 Jul 2023 16:24:25 +0000 (18:24 +0200)]
avoid NPE
Katja Luther [Tue, 11 Jul 2023 07:58:51 +0000 (09:58 +0200)]
ref #10362: adapt dtos and service to new no data status
Katja Luther [Tue, 11 Jul 2023 07:57:33 +0000 (09:57 +0200)]
ref #10362: add noDataStatus to dto
Andreas Müller [Sat, 8 Jul 2023 10:33:01 +0000 (12:33 +0200)]
ref #10324 fix namedArea fetching in import base
Andreas Müller [Fri, 7 Jul 2023 11:28:21 +0000 (13:28 +0200)]
revert ref #10322 make sourceDto.label a simple attribute, not a list
Andreas Müller [Fri, 7 Jul 2023 10:34:29 +0000 (12:34 +0200)]
ref #10368 allow excluding factual data from cdmlight export
Andreas Müller [Fri, 7 Jul 2023 10:17:10 +0000 (12:17 +0200)]
ref #10322 make sourceDto.label a simple attribute, not a list
Andreas Müller [Fri, 7 Jul 2023 10:15:45 +0000 (12:15 +0200)]
cleanup
Andreas Müller [Fri, 7 Jul 2023 09:24:26 +0000 (11:24 +0200)]
ref #10367 add citationMicroReference to description of sources in ReferencingObjectsView
Andreas Müller [Fri, 7 Jul 2023 08:59:47 +0000 (10:59 +0200)]
ref #10322 fix NPE in concept relation loading
Andreas Müller [Wed, 5 Jul 2023 22:10:20 +0000 (00:10 +0200)]
ref #2975 update testH2 in cdmlib
Andreas Müller [Wed, 5 Jul 2023 21:57:30 +0000 (23:57 +0200)]
ref #2975 add noDataStatus to descriptive data (cont. 2)
Andreas Müller [Wed, 5 Jul 2023 21:54:03 +0000 (23:54 +0200)]
ref #2975 add noDataStatus to descriptive data (cont.)
Andreas Müller [Wed, 5 Jul 2023 21:39:00 +0000 (23:39 +0200)]
ref #10322 handle sec- and relSource in taxon relations
Andreas Müller [Wed, 5 Jul 2023 21:37:29 +0000 (23:37 +0200)]
cleanup
Andreas Müller [Wed, 5 Jul 2023 21:30:56 +0000 (23:30 +0200)]
minor
Andreas Müller [Tue, 27 Jun 2023 09:41:28 +0000 (11:41 +0200)]
ref #2975 add noDataStatus to descriptive data
Andreas Müller [Wed, 5 Jul 2023 11:14:22 +0000 (13:14 +0200)]
ref #10178 some cleanup for name matching (cont.)
Andreas Müller [Tue, 4 Jul 2023 16:53:22 +0000 (18:53 +0200)]
ref #10178 some cleanup for name matching (not finished yet)
Andreas Müller [Mon, 3 Jul 2023 15:31:59 +0000 (17:31 +0200)]
ref #10322 fix exception in PortalDtoLoader due to namedArea.includes proxies (cont.)