Katja Luther [Wed, 29 May 2019 10:59:54 +0000 (12:59 +0200)]
ref #8182: adapt occurrence DTOs to use them in details page of blast result
Katja Luther [Wed, 29 May 2019 10:52:08 +0000 (12:52 +0200)]
ref #8045: add toString() to the preference enums
Patrick Plitzner [Wed, 29 May 2019 09:51:00 +0000 (11:51 +0200)]
ref #8248 Add term vocbulary import test + code cleanup
Patrick Plitzner [Wed, 29 May 2019 08:37:55 +0000 (10:37 +0200)]
ref #8248 Fix property string access
Patrick Plitzner [Wed, 29 May 2019 07:41:35 +0000 (09:41 +0200)]
ref #6774 Init export configurator
Patrick Plitzner [Tue, 28 May 2019 15:51:08 +0000 (17:51 +0200)]
ref #8248 Adapt test to import
Patrick Plitzner [Tue, 28 May 2019 15:50:35 +0000 (17:50 +0200)]
ref #8248 Set UUID during import
Patrick Plitzner [Tue, 28 May 2019 13:02:24 +0000 (15:02 +0200)]
ref #6774 Adapt test to export format
Katja Luther [Mon, 27 May 2019 12:56:04 +0000 (14:56 +0200)]
fix tests for cdmlight
Katja Luther [Mon, 27 May 2019 12:13:39 +0000 (14:13 +0200)]
fix preference service
Patrick Plitzner [Mon, 27 May 2019 12:00:43 +0000 (14:00 +0200)]
ref #8248, #6774 Fix bean names
Katja Luther [Mon, 27 May 2019 10:48:41 +0000 (12:48 +0200)]
ref #8045: add remove to preference service and dao
Patrick Plitzner [Mon, 27 May 2019 07:58:17 +0000 (09:58 +0200)]
ref #8248 Implement termvocabulary import
Patrick Plitzner [Mon, 27 May 2019 07:39:17 +0000 (09:39 +0200)]
ref #6774 Set vocabulary for partOf and kindOf terms in export
Patrick Plitzner [Mon, 27 May 2019 07:15:33 +0000 (09:15 +0200)]
ref #6774 Fix node hierarchy in export
Patrick Plitzner [Mon, 27 May 2019 07:11:06 +0000 (09:11 +0200)]
ref #8248 Extract CDM entity creation to util
Patrick Plitzner [Sun, 26 May 2019 13:48:31 +0000 (15:48 +0200)]
ref #8248, #6774 Extract model creation form import and export to util
Patrick Plitzner [Sun, 26 May 2019 13:30:48 +0000 (15:30 +0200)]
ref #8248 Move rdf model to import state
Patrick Plitzner [Sun, 26 May 2019 13:19:09 +0000 (15:19 +0200)]
ref #6774 Use UUID for feature tree export
Patrick Plitzner [Fri, 24 May 2019 12:22:23 +0000 (14:22 +0200)]
ref #6774 Fix class cast exception
Patrick Plitzner [Fri, 24 May 2019 11:48:55 +0000 (13:48 +0200)]
ref #6774 Add service method findVocabularyDtoByTermTypes()
Andreas Kohlbecker [Fri, 24 May 2019 11:59:08 +0000 (13:59 +0200)]
ref #8209 modularization of reference init strategies - bug fix
Andreas Kohlbecker [Fri, 24 May 2019 09:49:26 +0000 (11:49 +0200)]
ref #8209 modularization of reference init strategies
Andreas Kohlbecker [Fri, 24 May 2019 09:36:20 +0000 (11:36 +0200)]
ref #8209 modularization of reference init strategies and improving EntitiyInitStrategy class
Katja Luther [Thu, 23 May 2019 12:19:53 +0000 (14:19 +0200)]
minor
Katja Luther [Thu, 23 May 2019 12:07:37 +0000 (14:07 +0200)]
fix sortindex in cdmlight export
Patrick Plitzner [Thu, 23 May 2019 10:03:47 +0000 (12:03 +0200)]
ref #6774 Refactor export class inheritance
Patrick Plitzner [Thu, 23 May 2019 08:43:18 +0000 (10:43 +0200)]
ref #6774 Extract all resource creation to util class
Andreas Müller [Thu, 23 May 2019 09:36:48 +0000 (11:36 +0200)]
adapt IdNamespace predicate a bit #8294
Patrick Plitzner [Wed, 22 May 2019 11:58:29 +0000 (13:58 +0200)]
ref #6774 Bidirectional linking of terms and vocabularies
Patrick Plitzner [Wed, 22 May 2019 11:43:15 +0000 (13:43 +0200)]
ref #6774 Add util class for static methods
Patrick Plitzner [Wed, 22 May 2019 10:04:27 +0000 (12:04 +0200)]
Set vocabulary DTO when creating a term DTO
Patrick Plitzner [Tue, 21 May 2019 17:34:20 +0000 (19:34 +0200)]
ref #6774 Refactor term tree export
- unify resource creation methods
Patrick Plitzner [Tue, 21 May 2019 17:19:53 +0000 (19:19 +0200)]
ref #6774 Implement term vocabulary OWL export (partially)
Patrick Plitzner [Tue, 21 May 2019 17:13:19 +0000 (19:13 +0200)]
ref #6774 Use term node uuid for node resource
Andreas Kohlbecker [Wed, 22 May 2019 06:47:39 +0000 (08:47 +0200)]
ref #8252 preserving section authors and better title compentation
Andreas Müller [Tue, 21 May 2019 20:15:57 +0000 (22:15 +0200)]
add some term uuids to E+M import
Andreas Müller [Tue, 21 May 2019 20:10:27 +0000 (22:10 +0200)]
ref #8286 add centimeter to MeasurementUnit
Andreas Müller [Sun, 19 May 2019 07:22:26 +0000 (09:22 +0200)]
ref #8189 adapt tests for ConfigFileUtilTest
Patrick Plitzner [Tue, 21 May 2019 12:59:21 +0000 (14:59 +0200)]
ref #6774 Refactor OWL export
- move OWL model to export state
Katja Luther [Tue, 21 May 2019 10:16:11 +0000 (12:16 +0200)]
minor
Katja Luther [Tue, 21 May 2019 08:16:49 +0000 (10:16 +0200)]
fix sortindex for root nodes and harmonize column names
Katja Luther [Tue, 21 May 2019 08:12:30 +0000 (10:12 +0200)]
add check for dna data
Andreas Kohlbecker [Mon, 20 May 2019 10:35:01 +0000 (12:35 +0200)]
ref #7966 preparing web service contollers to search for NULL type status via UUID parameter
Andreas Kohlbecker [Fri, 17 May 2019 14:02:57 +0000 (16:02 +0200)]
fixing NPE in TypeDesignationStatusFilter processing when '- none -' is selected
Andreas Kohlbecker [Fri, 17 May 2019 12:45:20 +0000 (14:45 +0200)]
fixing wording in logging
Andreas Kohlbecker [Fri, 17 May 2019 12:44:28 +0000 (14:44 +0200)]
fix #8279 avoiding ClassCastExceptin in CdmUserHelper
Andreas Müller [Fri, 17 May 2019 12:28:36 +0000 (14:28 +0200)]
revert commit
e358ae186 and adapt return type
Andreas Müller [Fri, 17 May 2019 11:02:01 +0000 (13:02 +0200)]
add E+M common name area voc uuid
Andreas Müller [Fri, 17 May 2019 11:01:10 +0000 (13:01 +0200)]
ref #8189 fix user.home in AccountStore
Andreas Müller [Fri, 17 May 2019 10:59:56 +0000 (12:59 +0200)]
use state in getVocabulary
Andreas Müller [Thu, 16 May 2019 07:09:59 +0000 (09:09 +0200)]
fix findTitleCache in service layer
Andreas Müller [Thu, 16 May 2019 07:08:29 +0000 (09:08 +0200)]
ref #7470 preliminary set text to transient in TextualTypeDesignation
Andreas Müller [Thu, 16 May 2019 04:38:02 +0000 (06:38 +0200)]
make referenceTitleCache index consistent
Andreas Müller [Thu, 16 May 2019 04:37:15 +0000 (06:37 +0200)]
ref #7470 preliminary set isVerbatim to transient in TextualTypeDesignation
Andreas Müller [Wed, 15 May 2019 12:57:14 +0000 (14:57 +0200)]
ref #7470 add TextualTypeDesignation.isVerbatim to test schemas
Andreas Müller [Wed, 15 May 2019 12:25:31 +0000 (14:25 +0200)]
ref #7470 add TextualTypeDesignation to hibernate.cfg
Patrick Plitzner [Wed, 15 May 2019 06:55:08 +0000 (08:55 +0200)]
ref #6774 Export term vocabulary for each term
Patrick Plitzner [Wed, 15 May 2019 06:07:33 +0000 (08:07 +0200)]
ref #6774 Refactor export for multiple term trees
Andreas Müller [Mon, 13 May 2019 18:18:55 +0000 (20:18 +0200)]
minor
Katja Luther [Mon, 13 May 2019 07:58:01 +0000 (09:58 +0200)]
fix #8264: add published to synonym table
Katja Luther [Fri, 10 May 2019 08:31:36 +0000 (10:31 +0200)]
fix #8264: add excluded, unplaced and published to taxon table of cdm light export
Katja Luther [Wed, 8 May 2019 11:03:24 +0000 (13:03 +0200)]
ref #7433: changes to get dnaSample for genetic accession number
Patrick Plitzner [Tue, 7 May 2019 14:27:28 +0000 (16:27 +0200)]
ref #8263 Set vocabulary DTO for all term DTOs during initialization
Andreas Müller [Tue, 7 May 2019 12:52:43 +0000 (14:52 +0200)]
E+M special languages
Patrick Plitzner [Tue, 7 May 2019 10:12:52 +0000 (12:12 +0200)]
fix #8257 Remove factory methods for term node creation
Katja Luther [Tue, 7 May 2019 07:50:51 +0000 (09:50 +0200)]
ref #8045: add Interface for Preference Enums
jenkins [Mon, 6 May 2019 14:42:22 +0000 (16:42 +0200)]
Updating develop poms back to pre merge state
jenkins [Mon, 6 May 2019 14:42:21 +0000 (16:42 +0200)]
Merge branch 'master' into develop
jenkins [Mon, 6 May 2019 14:42:21 +0000 (16:42 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Mon, 6 May 2019 14:42:17 +0000 (16:42 +0200)]
Merge branch 'release/5.7.0'
jenkins [Mon, 6 May 2019 14:26:58 +0000 (16:26 +0200)]
updating poms for branch'release/5.7.0' with non-snapshot versions
jenkins [Fri, 3 May 2019 15:21:25 +0000 (17:21 +0200)]
updating poms for 5.8.0-SNAPSHOT development
Andreas Müller [Fri, 3 May 2019 13:45:06 +0000 (15:45 +0200)]
cleanup
Andreas Müller [Fri, 3 May 2019 13:44:46 +0000 (15:44 +0200)]
fix preference value length check in CdmPreference constructor. Adapt to new length
Patrick Plitzner [Fri, 3 May 2019 09:58:34 +0000 (11:58 +0200)]
ref #8242 Ensure order of TermDTO query
Patrick Plitzner [Thu, 2 May 2019 16:06:42 +0000 (18:06 +0200)]
Fix term creation for multiple representations
Patrick Plitzner [Thu, 2 May 2019 15:56:08 +0000 (17:56 +0200)]
Add constructor for term type only
Patrick Plitzner [Thu, 2 May 2019 14:07:52 +0000 (16:07 +0200)]
Fix owl structure tree import test
Patrick Plitzner [Thu, 2 May 2019 10:41:45 +0000 (12:41 +0200)]
Rename Owl import/export to StructureTreeOwl import/export
Andreas Kohlbecker [Tue, 30 Apr 2019 17:47:22 +0000 (19:47 +0200)]
ref #8252 improving ReferenceEllypsisFormatter for print series and proceedings
Andreas Kohlbecker [Tue, 30 Apr 2019 14:15:33 +0000 (16:15 +0200)]
ref #8252 improving ReferenceEllypsisFormatter for journals and other references where the main information is in the title
Andreas Kohlbecker [Tue, 30 Apr 2019 13:05:24 +0000 (15:05 +0200)]
ref #8193 collection setter for TaxonName.status
Andreas Müller [Tue, 30 Apr 2019 10:40:33 +0000 (12:40 +0200)]
fix #8251 fix property path for FeatureTreeListController
Andreas Müller [Tue, 30 Apr 2019 10:40:00 +0000 (12:40 +0200)]
cleanup
Andreas Müller [Mon, 29 Apr 2019 17:15:36 +0000 (19:15 +0200)]
minor cleanup
Andreas Müller [Mon, 29 Apr 2019 12:53:24 +0000 (14:53 +0200)]
Update OwlImportTest. Use ClearDBDatSet instead of ClearDataSet. Still failing.
Andreas Kohlbecker [Mon, 29 Apr 2019 14:06:05 +0000 (16:06 +0200)]
removing debuging code line
Andreas Kohlbecker [Mon, 29 Apr 2019 14:02:34 +0000 (16:02 +0200)]
ref #7965 methods to get typeDesignationStatusInUse as term an as filter object
Patrick Plitzner [Mon, 29 Apr 2019 08:45:50 +0000 (10:45 +0200)]
Fix OWL test package structure
Andreas Müller [Mon, 29 Apr 2019 12:27:58 +0000 (14:27 +0200)]
try to fix test
Katja Luther [Mon, 29 Apr 2019 12:18:35 +0000 (14:18 +0200)]
revert changes in PrefKey
Katja Luther [Mon, 29 Apr 2019 11:52:25 +0000 (13:52 +0200)]
rename getUuidAndTitleCache for namedAreas
Katja Luther [Mon, 29 Apr 2019 10:30:17 +0000 (12:30 +0200)]
minor
Katja Luther [Mon, 29 Apr 2019 10:19:18 +0000 (12:19 +0200)]
ref #7920: add predicate for area specicific status
Andreas Kohlbecker [Fri, 26 Apr 2019 16:33:13 +0000 (18:33 +0200)]
ref #8209 avoiding LIEs when using the ReferenceEllypsisFormatter
Patrick Plitzner [Fri, 26 Apr 2019 14:47:14 +0000 (16:47 +0200)]
ref #8248 Add term representations to OWL import and export and test
Patrick Plitzner [Fri, 26 Apr 2019 14:45:46 +0000 (16:45 +0200)]
ref #8248 Add constructor for term with a set of representations
Patrick Plitzner [Fri, 26 Apr 2019 10:02:25 +0000 (12:02 +0200)]
ref #8248 Ready OWL import for taxeditor usage
Patrick Plitzner [Thu, 25 Apr 2019 12:21:44 +0000 (14:21 +0200)]
ref #8248 Enhance OWL import
- Add term URI to import
- add sources to imported terms
- create term vocabulary for imported terms
- check for already existing terms
- save terms, feature nodes and feature trees to DB
- update OWL import test with added properties