cdmlib.git
6 years agoref #7114 implementing test to reproduce the issue
Andreas Kohlbecker [Thu, 14 Dec 2017 15:26:12 +0000 (16:26 +0100)]
ref #7114 implementing test to reproduce the issue

6 years agoref #6361 removing TaxonName.DTYPE and Reference.DTYPE
Andreas Kohlbecker [Thu, 14 Dec 2017 14:15:45 +0000 (15:15 +0100)]
ref #6361 removing TaxonName.DTYPE and Reference.DTYPE
  - changing dbscripts/001-cdm.h2.sql
  - adapting test data sets

6 years agobean loading priority
Andreas Kohlbecker [Thu, 14 Dec 2017 11:18:06 +0000 (12:18 +0100)]
bean loading priority

6 years agoallowing to override property files for test environments
Andreas Kohlbecker [Thu, 14 Dec 2017 11:17:47 +0000 (12:17 +0100)]
allowing to override property files for test environments

6 years agodata source bean id aka instance name now available from the Spring environment
Andreas Kohlbecker [Wed, 13 Dec 2017 16:41:15 +0000 (17:41 +0100)]
data source bean id aka instance name now available from the Spring environment

6 years agoref #7137 improvements to the RegistrationIdentifierMinter:
Andreas Kohlbecker [Wed, 13 Dec 2017 16:39:47 +0000 (17:39 +0100)]
ref #7137 improvements to the RegistrationIdentifierMinter:
  - addin getters
  - logging a warning when configuration incomplete

6 years agoref #7137 RegistrationIdentifierMinter implemented
Andreas Kohlbecker [Wed, 13 Dec 2017 14:15:03 +0000 (15:15 +0100)]
ref #7137 RegistrationIdentifierMinter implemented

6 years agoDo not add null to feature set
Patrick Plitzner [Fri, 8 Dec 2017 14:55:25 +0000 (15:55 +0100)]
Do not add null to feature set

6 years agoref #7130 enhancing filter capabilities of RegistrationService
Andreas Kohlbecker [Fri, 8 Dec 2017 14:41:19 +0000 (15:41 +0100)]
ref #7130 enhancing filter capabilities of RegistrationService
  - extending Restrictions by support for property paths

6 years agoconfiguring antrunner in lifecycle-mapping
Andreas Kohlbecker [Thu, 7 Dec 2017 15:38:17 +0000 (16:38 +0100)]
configuring antrunner in lifecycle-mapping

6 years agoref #7078: add uuidAndTitleCacheComparator to sort by rank and name
Katja Luther [Thu, 7 Dec 2017 11:03:19 +0000 (12:03 +0100)]
ref  #7078: add uuidAndTitleCacheComparator to sort by rank and name

6 years agofix #7077: when delete a typeDesignation, remove it from registration
Katja Luther [Thu, 7 Dec 2017 08:56:13 +0000 (09:56 +0100)]
fix #7077: when delete a typeDesignation, remove it from registration

6 years agoUpdating develop poms back to pre merge state
jenkins [Tue, 5 Dec 2017 15:07:31 +0000 (16:07 +0100)]
Updating develop poms back to pre merge state

6 years agoMerge branch 'master' into develop
jenkins [Tue, 5 Dec 2017 15:07:30 +0000 (16:07 +0100)]
Merge branch 'master' into develop

6 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Tue, 5 Dec 2017 15:07:29 +0000 (16:07 +0100)]
updating develop poms to master versions to avoid merge conflicts

6 years agoMerge branch 'release/4.12.0' 4.12.0
jenkins [Tue, 5 Dec 2017 15:07:25 +0000 (16:07 +0100)]
Merge branch 'release/4.12.0'

6 years agoupdating poms for branch'release/4.12.0' with non-snapshot versions
jenkins [Tue, 5 Dec 2017 14:50:24 +0000 (15:50 +0100)]
updating poms for branch'release/4.12.0' with non-snapshot versions

6 years agoupdating poms for 4.13.0-SNAPSHOT development
jenkins [Tue, 5 Dec 2017 14:18:29 +0000 (15:18 +0100)]
updating poms for 4.13.0-SNAPSHOT development

6 years agofix getUuidAndTitleCache for * origin/release/4.12.0
Katja Luther [Tue, 5 Dec 2017 13:20:20 +0000 (14:20 +0100)]
fix getUuidAndTitleCache for *

6 years agofix problem when reusing name for new taxon
Katja Luther [Tue, 5 Dec 2017 12:39:24 +0000 (13:39 +0100)]
fix problem when reusing name for new taxon

6 years agoundo unwanted changes
Andreas Müller [Tue, 5 Dec 2017 10:46:52 +0000 (11:46 +0100)]
undo unwanted changes

6 years agofix compile issue in CdmPermissionEvaluator
Andreas Müller [Tue, 5 Dec 2017 10:45:29 +0000 (11:45 +0100)]
fix compile issue in CdmPermissionEvaluator

6 years agoref #7109 fix tests for nom. valid
Andreas Müller [Tue, 5 Dec 2017 10:40:59 +0000 (11:40 +0100)]
ref #7109 fix tests for nom. valid

6 years ago#7109 rename abbrev label from nom. valid to nom. val.
Andreas Müller [Tue, 5 Dec 2017 10:04:48 +0000 (11:04 +0100)]
#7109 rename abbrev label from nom. valid to nom. val.

6 years agocleanup
Andreas Müller [Tue, 5 Dec 2017 10:03:14 +0000 (11:03 +0100)]
cleanup

6 years agodisabling most mapping in lifecycle-mapping-metadata.xml since some are obsoltete...
Andreas Kohlbecker [Mon, 4 Dec 2017 15:07:33 +0000 (16:07 +0100)]
disabling most mapping in lifecycle-mapping-metadata.xml since some are obsoltete and others are causing probelms with resoures

6 years agoadapt all tests to updated test data
Katja Luther [Mon, 4 Dec 2017 14:03:20 +0000 (15:03 +0100)]
adapt all tests to updated test data

6 years agofix delete and tests of specimen with typedesignations and gathering events
Katja Luther [Mon, 4 Dec 2017 13:44:09 +0000 (14:44 +0100)]
fix delete and tests of specimen with typedesignations and gathering events

6 years agotitleCache of the taxon is not updated when swap synonym and accepted taxon
Katja Luther [Mon, 4 Dec 2017 09:42:21 +0000 (10:42 +0100)]
titleCache of the taxon is not updated when swap synonym and accepted taxon

6 years agoadapt uuidAndTitleCache services and dao methods to search for a pattern
Katja Luther [Thu, 30 Nov 2017 10:52:46 +0000 (11:52 +0100)]
adapt uuidAndTitleCache services and dao methods to search for a pattern

6 years agocleanup
Andreas Müller [Fri, 24 Nov 2017 16:36:09 +0000 (17:36 +0100)]
cleanup

6 years agofix #7094 fix tests after removing whitespaces from nomenclatural titles of persons
Andreas Müller [Fri, 24 Nov 2017 16:35:43 +0000 (17:35 +0100)]
fix #7094 fix tests after removing whitespaces from nomenclatural titles of persons

6 years agoreset MediaUtils (was accidentally commited)
Andreas Müller [Thu, 23 Nov 2017 21:26:54 +0000 (22:26 +0100)]
reset MediaUtils (was accidentally commited)

6 years agoref #6965 remove space between initials and name in nomencl. person title
Andreas Müller [Thu, 23 Nov 2017 21:19:46 +0000 (22:19 +0100)]
ref #6965 remove space between initials and name in nomencl. person title

6 years agoref #6965 add reference author handling and and reporting for ID duplicates
Andreas Müller [Thu, 23 Nov 2017 21:18:53 +0000 (22:18 +0100)]
ref #6965 add reference author handling and and reporting for ID duplicates

6 years agoavoiding NPE in SpecimenOrObservationBaseVoter in case originals is null
Andreas Kohlbecker [Thu, 23 Nov 2017 12:16:32 +0000 (13:16 +0100)]
avoiding NPE in SpecimenOrObservationBaseVoter in case originals is null

6 years agoCreating spring bean DataBaseTablePrinter responsible for all database printing tasks...
Andreas Kohlbecker [Wed, 22 Nov 2017 15:45:47 +0000 (16:45 +0100)]
Creating spring bean DataBaseTablePrinter responsible for all database printing tasks, CdmIntegrationTest only wraps around this bean now

6 years agofix delete of derivedUnits, derivationEvent needs to be deleted, add getUUIDAndTitleC...
Katja Luther [Wed, 22 Nov 2017 12:28:16 +0000 (13:28 +0100)]
fix delete of derivedUnits, derivationEvent needs to be deleted, add getUUIDAndTitleCache with pattern and limit

6 years agoref #6965 fix compilation issue in ImportDeduplicationHelper
Andreas Müller [Tue, 21 Nov 2017 11:44:42 +0000 (12:44 +0100)]
ref #6965 fix compilation issue in ImportDeduplicationHelper

6 years agoref #6258 add cascading for registration in TaxonName and TypeDesignationBase
Andreas Müller [Tue, 21 Nov 2017 11:36:48 +0000 (12:36 +0100)]
ref #6258 add cascading for registration in TaxonName and TypeDesignationBase

6 years agocleanup
Andreas Müller [Tue, 21 Nov 2017 11:28:04 +0000 (12:28 +0100)]
cleanup

6 years agoref #6965 fix TropicosNameImportTest
Andreas Müller [Tue, 21 Nov 2017 11:27:52 +0000 (12:27 +0100)]
ref #6965 fix TropicosNameImportTest

6 years agoref #6965 fix empty TimePeriod matching bug
Andreas Müller [Tue, 21 Nov 2017 09:42:44 +0000 (10:42 +0100)]
ref #6965 fix empty TimePeriod matching bug

6 years agoref #6965 first version of Tropicos import
Andreas Müller [Tue, 21 Nov 2017 09:41:54 +0000 (10:41 +0100)]
ref #6965 first version of Tropicos import

6 years agocleanup
Andreas Müller [Tue, 21 Nov 2017 09:31:31 +0000 (10:31 +0100)]
cleanup

6 years agoref #6965 rename static Name Identifier methods
Andreas Müller [Tue, 21 Nov 2017 09:27:59 +0000 (10:27 +0100)]
ref #6965 rename static Name Identifier methods

6 years agoref #6965 move CsvImportBase to "in" package
Andreas Müller [Tue, 21 Nov 2017 09:25:22 +0000 (10:25 +0100)]
ref #6965 move CsvImportBase to "in" package

6 years agoadd level to titleCache of namedArea in uuidAndTitleCache search
Katja Luther [Wed, 15 Nov 2017 08:57:37 +0000 (09:57 +0100)]
add level to titleCache of namedArea in uuidAndTitleCache search

6 years agoadd uuidAndTitleCache method to get uuidAndTitleCache of namedArea depending on vocab...
Katja Luther [Tue, 14 Nov 2017 12:37:56 +0000 (13:37 +0100)]
add uuidAndTitleCache method to get uuidAndTitleCache of namedArea depending on vocabulary

6 years agotypos and whitespace
Andreas Kohlbecker [Tue, 14 Nov 2017 11:31:23 +0000 (12:31 +0100)]
typos and whitespace

6 years agofixing NPE in IdentifiableEntity.getExtensions()
Andreas Kohlbecker [Tue, 14 Nov 2017 11:30:53 +0000 (12:30 +0100)]
fixing NPE in IdentifiableEntity.getExtensions()

6 years agohanding hibernate proxies
Andreas Kohlbecker [Tue, 14 Nov 2017 11:30:11 +0000 (12:30 +0100)]
handing hibernate proxies

6 years agomove stream base classes from dwca to stream package (test package)
Andreas Müller [Sun, 12 Nov 2017 07:27:00 +0000 (08:27 +0100)]
move stream base classes from dwca to stream package (test package)

6 years agocleanup
Andreas Müller [Sat, 11 Nov 2017 23:28:04 +0000 (00:28 +0100)]
cleanup

6 years agomove stream base classes from dwca to stream package
Andreas Müller [Sat, 11 Nov 2017 23:27:50 +0000 (00:27 +0100)]
move stream base classes from dwca to stream package

6 years agoremove reference deduplication as default from Excel import
Andreas Müller [Sat, 11 Nov 2017 21:22:57 +0000 (22:22 +0100)]
remove reference deduplication as default from Excel import

6 years agocleanup
Andreas Müller [Sat, 11 Nov 2017 21:22:16 +0000 (22:22 +0100)]
cleanup

6 years agoref #7075 first running version for ImageExcelImport
Andreas Müller [Sat, 11 Nov 2017 21:20:22 +0000 (22:20 +0100)]
ref #7075 first running version for ImageExcelImport

6 years agoref #7075 add slash dates to TimePeriodParser
Andreas Müller [Sat, 11 Nov 2017 21:18:01 +0000 (22:18 +0100)]
ref #7075 add slash dates to TimePeriodParser

6 years agocleanup
Andreas Müller [Sun, 5 Nov 2017 17:55:16 +0000 (18:55 +0100)]
cleanup

6 years agoUpdating develop poms back to pre merge state
jenkins [Wed, 8 Nov 2017 11:16:07 +0000 (12:16 +0100)]
Updating develop poms back to pre merge state

6 years agoMerge branch 'master' into develop
jenkins [Wed, 8 Nov 2017 11:16:07 +0000 (12:16 +0100)]
Merge branch 'master' into develop

6 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 8 Nov 2017 11:16:06 +0000 (12:16 +0100)]
updating develop poms to master versions to avoid merge conflicts

6 years agoMerge branch 'release/4.11.0' 4.11.0
jenkins [Wed, 8 Nov 2017 11:16:03 +0000 (12:16 +0100)]
Merge branch 'release/4.11.0'

6 years agoupdating poms for branch'release/4.11.0' with non-snapshot versions
jenkins [Wed, 8 Nov 2017 10:57:17 +0000 (11:57 +0100)]
updating poms for branch'release/4.11.0' with non-snapshot versions

6 years agoupdating poms for 4.12.0-SNAPSHOT development
jenkins [Wed, 8 Nov 2017 10:37:52 +0000 (11:37 +0100)]
updating poms for 4.12.0-SNAPSHOT development

6 years agoref #7046 load by id method in service base class origin/release/4.11.0
Andreas Kohlbecker [Fri, 3 Nov 2017 15:15:56 +0000 (16:15 +0100)]
ref #7046 load by id method in service base class

6 years agoreducing log level
Andreas Kohlbecker [Fri, 3 Nov 2017 15:14:44 +0000 (16:14 +0100)]
reducing log level

6 years agocleanup
Andreas Müller [Fri, 3 Nov 2017 00:59:27 +0000 (01:59 +0100)]
cleanup

6 years agocleanup and improved generics for commonservice findXXX methods
Andreas Müller [Thu, 2 Nov 2017 22:52:38 +0000 (23:52 +0100)]
cleanup and improved generics for commonservice findXXX methods

6 years agoref #6606 changes in cdmlib for bogota specimen import
Andreas Müller [Mon, 30 Oct 2017 22:00:40 +0000 (23:00 +0100)]
ref #6606 changes in cdmlib for bogota specimen import

6 years agofix handling of null feature in import
Andreas Müller [Fri, 27 Oct 2017 21:17:59 +0000 (23:17 +0200)]
fix handling of null feature in import

6 years agosome new methods for CdmPreferences
Andreas Müller [Fri, 27 Oct 2017 21:17:14 +0000 (23:17 +0200)]
some new methods for CdmPreferences

6 years agotry to fix NPE in TaxonNodeByRankAndNameComparator
Andreas Müller [Fri, 27 Oct 2017 21:16:25 +0000 (23:16 +0200)]
try to fix NPE in TaxonNodeByRankAndNameComparator

6 years agofix #6780 correctly checking for active transaction
Andreas Kohlbecker [Wed, 25 Oct 2017 14:10:24 +0000 (16:10 +0200)]
fix #6780 correctly checking for active transaction

6 years agoref #7034 closing open database connections in DataSourceConfigurer
Andreas Kohlbecker [Wed, 25 Oct 2017 14:07:25 +0000 (16:07 +0200)]
ref #7034 closing open database connections in DataSourceConfigurer

6 years agoRevert "fixing potential memory leak in ConversationHolder, releasing datasource"
Andreas Kohlbecker [Tue, 24 Oct 2017 15:37:50 +0000 (17:37 +0200)]
Revert "fixing potential memory leak in ConversationHolder, releasing datasource"

this was a bad idea

This reverts commit af2d2d3b380c58b4b823c0921f975d3abae9fdf4.

6 years agofixing potential memory leak in ConversationHolder, releasing datasource
Andreas Kohlbecker [Tue, 24 Oct 2017 15:15:55 +0000 (17:15 +0200)]
fixing potential memory leak in ConversationHolder, releasing datasource

6 years agominor
Andreas Müller [Mon, 23 Oct 2017 22:11:09 +0000 (00:11 +0200)]
minor

6 years agoavoiding excessive session log entries at INFO level
Andreas Kohlbecker [Mon, 23 Oct 2017 13:17:18 +0000 (15:17 +0200)]
avoiding excessive session log entries at INFO level

6 years agoref #6867 public access to RunAsAuthenticator methods
Andreas Kohlbecker [Mon, 23 Oct 2017 09:54:06 +0000 (11:54 +0200)]
ref #6867 public access to RunAsAuthenticator methods

6 years ago#7021 excluding also all created and updated fields
Andreas Kohlbecker [Mon, 23 Oct 2017 09:51:24 +0000 (11:51 +0200)]
#7021 excluding also all created and updated fields

6 years agoref #6903 preferences for vaadin
Andreas Müller [Sun, 22 Oct 2017 20:50:13 +0000 (22:50 +0200)]
ref #6903 preferences for vaadin

6 years agoremove model. as static prefix of predicate
Andreas Müller [Sun, 22 Oct 2017 17:17:34 +0000 (19:17 +0200)]
remove model. as static prefix of predicate

* it is unclear why it was originally invented in such an inflexible way

6 years agoSome utils methods for preferences
Andreas Müller [Sun, 22 Oct 2017 17:15:46 +0000 (19:15 +0200)]
Some utils methods for preferences

6 years agoadd uuid list as return type for CdmPreference.getValue
Andreas Müller [Sun, 22 Oct 2017 15:51:30 +0000 (17:51 +0200)]
add uuid list as return type for CdmPreference.getValue

6 years agocleanup
Andreas Müller [Fri, 20 Oct 2017 09:11:13 +0000 (11:11 +0200)]
cleanup

6 years agoref #7028 added preference predicate in cdmlib, fix missing uuid
Andreas Müller [Fri, 20 Oct 2017 09:09:02 +0000 (11:09 +0200)]
ref #7028 added preference predicate in cdmlib, fix missing uuid

6 years agocleaner CdmAuthority constructor
Andreas Kohlbecker [Fri, 20 Oct 2017 07:12:10 +0000 (09:12 +0200)]
cleaner CdmAuthority constructor

6 years agoref #7028 added preference predicate in cdmlib
Andreas Müller [Fri, 20 Oct 2017 08:41:00 +0000 (10:41 +0200)]
ref #7028 added preference predicate in cdmlib

6 years agocleanup
Andreas Müller [Fri, 20 Oct 2017 08:35:37 +0000 (10:35 +0200)]
cleanup

6 years agofix #7026 RegistrationVoter with further voting deccision for registrationStatus
Andreas Kohlbecker [Thu, 19 Oct 2017 19:48:19 +0000 (21:48 +0200)]
fix #7026 RegistrationVoter with further voting deccision for registrationStatus

6 years agofix #7027 consistent toString method for CdmAuthorities and more tests
Andreas Kohlbecker [Thu, 19 Oct 2017 16:12:53 +0000 (18:12 +0200)]
fix #7027 consistent toString method for CdmAuthorities and more tests

6 years agofix DatabaseTypeEnumTest
Andreas Müller [Wed, 18 Oct 2017 17:40:43 +0000 (19:40 +0200)]
fix DatabaseTypeEnumTest

6 years agorevert unwanted changes
Andreas Müller [Wed, 18 Oct 2017 16:20:15 +0000 (18:20 +0200)]
revert unwanted changes

6 years agominor
Andreas Müller [Wed, 18 Oct 2017 16:16:50 +0000 (18:16 +0200)]
minor

6 years agoref #4957 split terms into bulks of 2000 during termloading
Andreas Müller [Wed, 18 Oct 2017 16:16:24 +0000 (18:16 +0200)]
ref #4957 split terms into bulks of 2000 during termloading

6 years agocleanup
Andreas Müller [Wed, 18 Oct 2017 16:11:54 +0000 (18:11 +0200)]
cleanup

6 years agoref #4957 add SQLServer 2008 and 2012 to database types.
Andreas Müller [Wed, 18 Oct 2017 16:11:30 +0000 (18:11 +0200)]
ref #4957 add SQLServer 2008 and 2012 to database types.

6 years agomake VocabularyEnum not deprecated
Andreas Müller [Wed, 18 Oct 2017 16:01:49 +0000 (18:01 +0200)]
make VocabularyEnum not deprecated