Cherian Mathew [Wed, 8 Aug 2012 08:27:39 +0000 (08:27 +0000)]
added apt conversion method for input stream
Cherian Mathew [Wed, 8 Aug 2012 08:25:51 +0000 (08:25 +0000)]
corrected copy resources task. now using copy-resources goal which does not interfere with the default resource copy.
Andreas Müller [Tue, 7 Aug 2012 14:18:33 +0000 (14:18 +0000)]
remove 001_cdm.hsqldb.ddl in io layer as we do use H2 for tests now. Keeping both requires overhead in maintaining.
Andreas Müller [Tue, 7 Aug 2012 14:18:00 +0000 (14:18 +0000)]
remove 001_cdm.hsqldb.ddl in ext layer as we do use H2 for tests now. Keeping both requires overhead in maintaining.
Andreas Müller [Tue, 7 Aug 2012 14:16:56 +0000 (14:16 +0000)]
remove 001_cdm.hsqldb.ddl in service layer as we do use H2 for tests now. Keeping both requires overhead in maintaining.
Andreas Müller [Tue, 7 Aug 2012 14:06:40 +0000 (14:06 +0000)]
remove 001_cdm.hsqldb.ddl as we do use H2 for tests now. Keeping both requires overhead in maintaining.
Cherian Mathew [Mon, 6 Aug 2012 12:23:32 +0000 (12:23 +0000)]
resources to be made accessible to classes (trying again to commit)
Cherian Mathew [Mon, 6 Aug 2012 11:50:09 +0000 (11:50 +0000)]
xml files from "./src/main/resources/eu/etaxonomy/cdm" need to be accessible to the classes, so added resources section in build.
Andreas Müller [Mon, 6 Aug 2012 09:01:20 +0000 (09:01 +0000)]
remove other cdmlib dependencies then io, and remove build for apt
Andreas Müller [Mon, 6 Aug 2012 08:49:22 +0000 (08:49 +0000)]
remove dependency to cdmlib-commons to check if this fixes failing tests, partly revert for r15808
Cherian Mathew [Wed, 1 Aug 2012 08:34:51 +0000 (08:34 +0000)]
added apt file for name catalogue web services
added 'name catalogue' apt as sub item to the REST API item.
Cherian Mathew [Wed, 1 Aug 2012 08:33:13 +0000 (08:33 +0000)]
NameCatalogueController.java :
- added endpoints which return documentation
- imporoved javadoc
pom.xml :
- added dependency to cdmlib-commons due to usage of cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/DocUtils.java
Cherian Mathew [Wed, 1 Aug 2012 08:31:03 +0000 (08:31 +0000)]
added doxia-module dependencies for apt parsing
Cherian Mathew [Wed, 1 Aug 2012 08:28:40 +0000 (08:28 +0000)]
added subdirectory for cdmlib remote endpoint documentation
added apt files for the name catalogue web service documentation
Cherian Mathew [Wed, 1 Aug 2012 08:18:55 +0000 (08:18 +0000)]
The utility class which provides methods relating to documentation.
Andreas Müller [Tue, 31 Jul 2012 15:01:42 +0000 (15:01 +0000)]
update postgresql driver to version 9.1
Andreas Kohlbecker [Fri, 27 Jul 2012 15:42:40 +0000 (15:42 +0000)]
jsonp redirects to progress monitor working behind reverse proxy
Andreas Kohlbecker [Thu, 26 Jul 2012 09:24:26 +0000 (09:24 +0000)]
finally fixing bug in MediaUtils
Andreas Kohlbecker [Thu, 26 Jul 2012 08:41:15 +0000 (08:41 +0000)]
solving git-svn branch and merge problems
Andreas Kohlbecker [Thu, 26 Jul 2012 08:18:23 +0000 (08:18 +0000)]
fixing bug in getMediaForTaxon() & whitespace
Andreas Kohlbecker [Thu, 26 Jul 2012 07:49:50 +0000 (07:49 +0000)]
reverting preliminar commits on security and permissions r15723 r15724
Andreas Kohlbecker [Thu, 26 Jul 2012 07:38:48 +0000 (07:38 +0000)]
preliminar commit on security and permissions
Andreas Kohlbecker [Thu, 26 Jul 2012 07:38:44 +0000 (07:38 +0000)]
preliminar commit on security and permissions
Andreas Kohlbecker [Thu, 26 Jul 2012 07:38:42 +0000 (07:38 +0000)]
prevent media from being corrupted - fixing bugs in test and utils class
Andreas Kohlbecker [Wed, 25 Jul 2012 12:37:42 +0000 (12:37 +0000)]
MediaUtils.findPreferredMedia() returns Map<Media, MediaRepresentation>
Andreas Kohlbecker [Wed, 25 Jul 2012 12:37:37 +0000 (12:37 +0000)]
code cleaning
Andreas Kohlbecker [Wed, 25 Jul 2012 08:23:45 +0000 (08:23 +0000)]
prevent media from being corrupted - fixing bugs in test and utils class
Andreas Müller [Tue, 24 Jul 2012 22:01:29 +0000 (22:01 +0000)]
bugfix for countTaxonDescriptionMedia
Andreas Müller [Tue, 24 Jul 2012 21:58:01 +0000 (21:58 +0000)]
add TaxonDescriptionMedia methods to description service
Andreas Müller [Tue, 24 Jul 2012 21:35:01 +0000 (21:35 +0000)]
add methods for list/countTaxonDescriptionMedia
Andreas Müller [Tue, 24 Jul 2012 17:09:25 +0000 (17:09 +0000)]
minor
Andreas Kohlbecker [Tue, 24 Jul 2012 15:58:13 +0000 (15:58 +0000)]
refactoring listTaxonDescriptionMedia into ITaxonService
Andreas Kohlbecker [Tue, 24 Jul 2012 15:58:09 +0000 (15:58 +0000)]
prevent media from being corrupted
Andreas Kohlbecker [Mon, 23 Jul 2012 14:20:03 +0000 (14:20 +0000)]
fixing URL path problems in ProgressMonitorController
Andreas Kohlbecker [Mon, 23 Jul 2012 10:45:40 +0000 (10:45 +0000)]
modifications for Ajax rest service monitor
Andreas Müller [Fri, 20 Jul 2012 09:56:26 +0000 (09:56 +0000)]
minor
Andreas Müller [Fri, 20 Jul 2012 09:53:58 +0000 (09:53 +0000)]
minor
edit-jenkins [Thu, 19 Jul 2012 11:32:29 +0000 (11:32 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Thu, 19 Jul 2012 11:32:27 +0000 (11:32 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.0.12
Andreas Kohlbecker [Thu, 19 Jul 2012 08:16:15 +0000 (08:16 +0000)]
fixing RequestMapping of controller
Andreas Kohlbecker [Wed, 18 Jul 2012 13:56:06 +0000 (13:56 +0000)]
monitoring rest service initiated long term processes implemented
Andreas Kohlbecker [Wed, 18 Jul 2012 13:56:05 +0000 (13:56 +0000)]
MassIndexer progress monitor enabled
Andreas Kohlbecker [Wed, 18 Jul 2012 13:56:04 +0000 (13:56 +0000)]
preliminar .gitignore
Andreas Kohlbecker [Thu, 12 Jul 2012 11:58:58 +0000 (11:58 +0000)]
#2961 (test for highlighting multiple words as phrase FAILS)
Andreas Müller [Wed, 11 Jul 2012 20:30:01 +0000 (20:30 +0000)]
fix encoding problem
Andreas Müller [Wed, 11 Jul 2012 16:04:13 +0000 (16:04 +0000)]
fix bug in point tertier caching #2962
Andreas Müller [Wed, 11 Jul 2012 16:03:17 +0000 (16:03 +0000)]
fix bug in point tertier caching #2962
Andreas Kohlbecker [Wed, 11 Jul 2012 14:23:02 +0000 (14:23 +0000)]
ignoring failing test since ticket has been created
Andreas Kohlbecker [Wed, 11 Jul 2012 14:21:52 +0000 (14:21 +0000)]
improving search syntax robustness
Andreas Kohlbecker [Wed, 11 Jul 2012 14:13:03 +0000 (14:13 +0000)]
test for highlighting multiple words in OR and AND combination also as Phrase - FAILS with phrase
Andreas Kohlbecker [Wed, 11 Jul 2012 13:38:09 +0000 (13:38 +0000)]
test for searching multiple words in OR and AND combination also as Phrase
Andreas Kohlbecker [Wed, 11 Jul 2012 12:34:39 +0000 (12:34 +0000)]
deleting empty folder
Andreas Kohlbecker [Wed, 11 Jul 2012 08:26:05 +0000 (08:26 +0000)]
fixing hibernate_sequences
Andreas Kohlbecker [Tue, 10 Jul 2012 16:01:19 +0000 (16:01 +0000)]
fixing #2306 (holotype is only displayed as type)
Andreas Kohlbecker [Tue, 10 Jul 2012 15:07:38 +0000 (15:07 +0000)]
solving #2958 (rename and move TaxonServiceConfigurator)
Andreas Müller [Mon, 9 Jul 2012 16:16:53 +0000 (16:16 +0000)]
minor
Andreas Kohlbecker [Mon, 9 Jul 2012 14:37:42 +0000 (14:37 +0000)]
implementing filter by feature for #2942 (implement search frontend for findTaxonByDescriptionElementFullText)
Andreas Kohlbecker [Mon, 9 Jul 2012 14:36:55 +0000 (14:36 +0000)]
typo
Andreas Müller [Mon, 9 Jul 2012 14:29:12 +0000 (14:29 +0000)]
add chromosome number to test terms in io #2952
Andreas Müller [Mon, 9 Jul 2012 14:16:32 +0000 (14:16 +0000)]
generalize initialization of Singleattribute mappers in reference import
Andreas Müller [Mon, 9 Jul 2012 14:10:59 +0000 (14:10 +0000)]
add transaction management to marker mapper
Andreas Müller [Mon, 9 Jul 2012 14:10:10 +0000 (14:10 +0000)]
remove "NEW" comment
Andreas Müller [Mon, 9 Jul 2012 13:57:08 +0000 (13:57 +0000)]
change uuid for new chromosome number representation in tests
Andreas Müller [Mon, 9 Jul 2012 13:42:08 +0000 (13:42 +0000)]
add chromosome number to test terms
Andreas Müller [Mon, 9 Jul 2012 12:41:46 +0000 (12:41 +0000)]
remove unnecessary failing import
Andreas Kohlbecker [Mon, 9 Jul 2012 11:30:25 +0000 (11:30 +0000)]
reducing default fragment number for nicer search results
Andreas Kohlbecker [Fri, 6 Jul 2012 12:11:39 +0000 (12:11 +0000)]
adding lucene highlight
Andreas Kohlbecker [Fri, 6 Jul 2012 10:37:01 +0000 (10:37 +0000)]
score display for #2942 (implement search frontend for findTaxonByDescriptionElementFullText) and fixing some issues
Andreas Kohlbecker [Fri, 6 Jul 2012 09:46:46 +0000 (09:46 +0000)]
cdmlib related part for fixing #2931 (Free text search - hit highlighting implemented), also some code reorganization
Andreas Müller [Fri, 6 Jul 2012 09:41:36 +0000 (09:41 +0000)]
minor
Andreas Müller [Fri, 6 Jul 2012 09:39:16 +0000 (09:39 +0000)]
fully remove cdmlib-service test terms
Andreas Müller [Fri, 6 Jul 2012 09:36:22 +0000 (09:36 +0000)]
tmp
Andreas Müller [Fri, 6 Jul 2012 08:55:42 +0000 (08:55 +0000)]
don't use term copy for service test terms anymore. Use persistence terms directly instead
Andreas Müller [Thu, 5 Jul 2012 15:02:17 +0000 (15:02 +0000)]
change service test terms to use same terms as in persistence
Andreas Müller [Thu, 5 Jul 2012 14:51:31 +0000 (14:51 +0000)]
change service test terms to use same terms as in persistence
Andreas Müller [Thu, 5 Jul 2012 14:27:30 +0000 (14:27 +0000)]
fix for strange cast in TeamMapper
Cherian Mathew [Thu, 5 Jul 2012 13:32:49 +0000 (13:32 +0000)]
- updated name search web service to change 'taxonUuids' to 'taxonConceptUuids' and added a new accepted taxon uuid list called 'acceptedTaxonUuids' which contains the accepted taxon uuids of the taxon uuids in the 'taxonConceptUuids' list.
- added 'classification' parameter to the taxon web service to choose which classification is tob returned.
- updated classification data in response of taxon query to be a simple classification map in the case of 'defaualt' or single choice and to a map of maps (checklist id to classification map) in the case of 'all'.
Andreas Müller [Thu, 5 Jul 2012 12:46:59 +0000 (12:46 +0000)]
minor
Andreas Müller [Thu, 5 Jul 2012 12:45:53 +0000 (12:45 +0000)]
minor
Andreas Müller [Thu, 5 Jul 2012 12:45:21 +0000 (12:45 +0000)]
minor
Andreas Kohlbecker [Thu, 5 Jul 2012 10:14:22 +0000 (10:14 +0000)]
ordering of taxa solved, belongs to #2942 (implement search frontend for findTaxonByDescriptionElementFullText)
Andreas Kohlbecker [Thu, 5 Jul 2012 10:10:09 +0000 (10:10 +0000)]
pushing clearAuthentication up to CdmTransactionalIntegrationTest
Andreas Müller [Thu, 5 Jul 2012 09:44:37 +0000 (09:44 +0000)]
remove debugging code
Andreas Müller [Thu, 5 Jul 2012 09:25:06 +0000 (09:25 +0000)]
maybe workaround bugfix for failing Taxon import test with description feature
Andreas Müller [Thu, 5 Jul 2012 09:11:56 +0000 (09:11 +0000)]
maybe fixing compile error in suite class
Andreas Müller [Thu, 5 Jul 2012 09:09:52 +0000 (09:09 +0000)]
commit debug code for test not running in jenkins
Andreas Müller [Thu, 5 Jul 2012 08:55:21 +0000 (08:55 +0000)]
resolve conflict
Andreas Müller [Thu, 5 Jul 2012 08:52:24 +0000 (08:52 +0000)]
minor
Andreas Müller [Thu, 5 Jul 2012 08:49:42 +0000 (08:49 +0000)]
minor
Andreas Müller [Thu, 5 Jul 2012 08:37:03 +0000 (08:37 +0000)]
fix ExcelSpecimenImportExampleTest by adding rank abbrevs to test ranks
Andreas Kohlbecker [Thu, 5 Jul 2012 08:14:40 +0000 (08:14 +0000)]
improved EvaluationFailedExceptions - mvn3 clean install runs SUCCESSFULLY on my machine
Andreas Müller [Wed, 4 Jul 2012 22:21:06 +0000 (22:21 +0000)]
some titlecaches for test ranks
Andreas Müller [Wed, 4 Jul 2012 22:19:41 +0000 (22:19 +0000)]
minor
Andreas Müller [Wed, 4 Jul 2012 20:48:31 +0000 (20:48 +0000)]
updated testing terms in persistence
Andreas Müller [Wed, 4 Jul 2012 20:48:00 +0000 (20:48 +0000)]
minor
Andreas Müller [Wed, 4 Jul 2012 20:47:30 +0000 (20:47 +0000)]
updating io test, only test not running currently are ExcelSpecimen.testResultSet (error in test) and Endnote import (error in import)
Andreas Müller [Wed, 4 Jul 2012 19:28:33 +0000 (19:28 +0000)]
minor
Andreas Müller [Wed, 4 Jul 2012 16:29:35 +0000 (16:29 +0000)]
minor
Andreas Kohlbecker [Wed, 4 Jul 2012 15:32:52 +0000 (15:32 +0000)]
removing debug uotput
Andreas Kohlbecker [Wed, 4 Jul 2012 15:31:35 +0000 (15:31 +0000)]
solving problem with user saying authenticated over test boundaries