cdmlib.git
7 years agoref #6636 handle Books correctly in RIS import
Andreas Müller [Mon, 15 May 2017 22:52:33 +0000 (00:52 +0200)]
ref #6636 handle Books correctly in RIS import

7 years agominor
Andreas Müller [Sun, 14 May 2017 21:15:50 +0000 (23:15 +0200)]
minor

7 years agoref #6636 further improvements to RIS import
Andreas Müller [Sun, 14 May 2017 21:15:32 +0000 (23:15 +0200)]
ref #6636 further improvements to RIS import

7 years agoref #6636 further improvements to RIS import
Andreas Müller [Sat, 13 May 2017 07:56:38 +0000 (09:56 +0200)]
ref #6636 further improvements to RIS import

7 years agoref #6636 first running version of RisReferenceImport, some important tags are still...
Andreas Müller [Fri, 12 May 2017 20:45:32 +0000 (22:45 +0200)]
ref #6636 first running version of RisReferenceImport, some important tags are still missing

7 years agorevert the last change in AbcdImport
Katja Luther [Fri, 12 May 2017 11:31:20 +0000 (13:31 +0200)]
revert the last change in AbcdImport

7 years agoadapt AbcdGgbnImportTest sortindex handling for root
Andreas Müller [Fri, 12 May 2017 10:51:16 +0000 (12:51 +0200)]
adapt AbcdGgbnImportTest sortindex handling for root

7 years agoref #6510 adapt source reference handling for representation import
Andreas Müller [Fri, 12 May 2017 10:30:37 +0000 (12:30 +0200)]
ref #6510 adapt source reference handling for representation import

7 years agoCleanup Endnote import
Andreas Müller [Fri, 12 May 2017 10:24:12 +0000 (12:24 +0200)]
Cleanup Endnote import

7 years agoref #6636 firs incomplete version of RIS reference import
Andreas Müller [Fri, 12 May 2017 10:20:24 +0000 (12:20 +0200)]
ref #6636 firs incomplete version of RIS reference import

7 years agocleanup
Andreas Müller [Fri, 12 May 2017 09:30:05 +0000 (11:30 +0200)]
cleanup

7 years agoCleanup Endnote import
Andreas Müller [Thu, 11 May 2017 16:33:02 +0000 (18:33 +0200)]
Cleanup Endnote import

7 years agoreload default classification after commit
Katja Luther [Fri, 12 May 2017 09:35:50 +0000 (11:35 +0200)]
reload default classification after commit

7 years agoadd check for sortindex > -1 in ABCD file import with new taxa in new classification
Katja Luther [Fri, 12 May 2017 07:00:57 +0000 (09:00 +0200)]
add check for sortindex > -1 in ABCD file import with new taxa in new classification

7 years agofix ABCD206XMLFieldGetter
Katja Luther [Thu, 11 May 2017 13:50:25 +0000 (15:50 +0200)]
fix ABCD206XMLFieldGetter

7 years agoadapt Abcd206Import for gbol
Katja Luther [Thu, 11 May 2017 12:37:05 +0000 (14:37 +0200)]
adapt Abcd206Import for gbol

7 years agothe needNomenclaturalCode() method has to be in the import class
Katja Luther [Thu, 11 May 2017 11:30:23 +0000 (13:30 +0200)]
the needNomenclaturalCode() method has to be in the import class

7 years agofix #6480: fix delete of specimenOrObservations
Katja Luther [Thu, 11 May 2017 08:38:08 +0000 (10:38 +0200)]
fix #6480: fix delete of specimenOrObservations

7 years agoref #6281 added doc for dao.flush()
Andreas Müller [Wed, 10 May 2017 20:27:54 +0000 (22:27 +0200)]
ref #6281  added doc for dao.flush()

7 years agoref #6524, ref #6619 set needsNomenclaturalCode to false for ExcelDistributionUpdateC...
Andreas Müller [Wed, 10 May 2017 18:33:40 +0000 (20:33 +0200)]
ref #6524, ref #6619 set needsNomenclaturalCode to false for ExcelDistributionUpdateConfigurator

7 years agoref #3665 adapt test for original spelling
Andreas Müller [Wed, 10 May 2017 11:16:09 +0000 (13:16 +0200)]
ref #3665 adapt test for original spelling

7 years agoref #3665 use high quotation marks and round not square brackets
Andreas Müller [Tue, 9 May 2017 21:12:06 +0000 (23:12 +0200)]
ref #3665 use high quotation marks and round not square brackets

7 years agofix compile error and some cleanup
Andreas Müller [Tue, 9 May 2017 20:57:19 +0000 (22:57 +0200)]
fix compile error and some cleanup

7 years agouse getReferencingObjectsCount dao method in service method
Katja Luther [Tue, 9 May 2017 11:40:04 +0000 (13:40 +0200)]
use getReferencingObjectsCount dao method in service method

7 years agofix #6314: add homotypicalGroupSequenceNumber
Katja Luther [Mon, 8 May 2017 13:50:01 +0000 (15:50 +0200)]
fix #6314: add homotypicalGroupSequenceNumber

7 years agorevert a change in the last commit
Katja Luther [Mon, 8 May 2017 07:58:21 +0000 (09:58 +0200)]
revert a change in the last commit

7 years agominor
Katja Luther [Mon, 8 May 2017 07:13:12 +0000 (09:13 +0200)]
minor

7 years agofix #6281: call a flush after removing the synonym from taxon seems to fix the problem
Katja Luther [Fri, 5 May 2017 11:46:28 +0000 (13:46 +0200)]
fix #6281: call a flush after removing the synonym from taxon seems to fix the problem

7 years agofix #6619: missed to commit ioService
Katja Luther [Fri, 5 May 2017 09:19:53 +0000 (11:19 +0200)]
fix #6619: missed to commit ioService

7 years agominor
Katja Luther [Fri, 5 May 2017 07:25:25 +0000 (09:25 +0200)]
minor

7 years agoref #6524: smaller changes for better handling in editor
Katja Luther [Thu, 4 May 2017 12:56:23 +0000 (14:56 +0200)]
ref #6524: smaller changes for better handling in editor

7 years agoadd getter to IOResultBase.Error for reporting
Katja Luther [Thu, 4 May 2017 08:10:58 +0000 (10:10 +0200)]
add getter to IOResultBase.Error for reporting

7 years agominor (add test for DateTime formatting)
Andreas Müller [Wed, 3 May 2017 22:02:24 +0000 (00:02 +0200)]
minor (add test for DateTime formatting)

7 years agoref #6524 add reporting to distribution updater
Andreas Müller [Wed, 3 May 2017 22:01:57 +0000 (00:01 +0200)]
ref #6524 add reporting to distribution updater

7 years agoref #6541 add reporting to ImportResult and change types for errors, warnings and...
Andreas Müller [Wed, 3 May 2017 22:00:36 +0000 (00:00 +0200)]
ref #6541 add reporting to ImportResult and change types for errors, warnings and exceptions

7 years agoref #6524 add reuse existing distribution
Andreas Müller [Wed, 3 May 2017 12:12:54 +0000 (14:12 +0200)]
ref #6524 add reuse existing distribution

7 years agoref #6524 add import source to ExcelDistributionUpdate
Andreas Müller [Wed, 3 May 2017 11:40:15 +0000 (13:40 +0200)]
ref #6524 add import source to ExcelDistributionUpdate

7 years agoAvoid dependency to org.codehaus.plexus.util.StringUtils
pplitzner [Wed, 3 May 2017 10:39:44 +0000 (12:39 +0200)]
Avoid dependency to org.codehaus.plexus.util.StringUtils

7 years agoref #6541 warning and errors to bytes in ImportResult
Andreas Müller [Sun, 30 Apr 2017 07:47:33 +0000 (09:47 +0200)]
ref #6541  warning and errors to bytes in ImportResult

7 years agoref #6524 first running version of (FauEu) distribution updater
Andreas Müller [Fri, 28 Apr 2017 21:19:40 +0000 (23:19 +0200)]
ref #6524 first running version of (FauEu) distribution updater

7 years agoref #3665 improve formatting for original spelling
Andreas Müller [Tue, 25 Apr 2017 20:48:50 +0000 (22:48 +0200)]
ref #3665 improve formatting for original spelling

7 years agocleanup
Andreas Müller [Tue, 25 Apr 2017 20:47:53 +0000 (22:47 +0200)]
cleanup

7 years agoChange some names of UTF8 enum
Andreas Müller [Tue, 25 Apr 2017 20:44:55 +0000 (22:44 +0200)]
Change some names of UTF8 enum

7 years agocleanup
Andreas Müller [Tue, 25 Apr 2017 12:53:47 +0000 (14:53 +0200)]
cleanup

7 years agocleanup
Andreas Müller [Tue, 25 Apr 2017 12:24:06 +0000 (14:24 +0200)]
cleanup

7 years agoref #6557 add name deduplication do ImportDeduplicationHelper
Andreas Müller [Sun, 23 Apr 2017 10:41:04 +0000 (12:41 +0200)]
ref #6557 add name deduplication do ImportDeduplicationHelper

7 years agocleanup
Andreas Müller [Sun, 23 Apr 2017 10:40:27 +0000 (12:40 +0200)]
cleanup

7 years agofix #6578 name cache for hybrid formulas
Andreas Müller [Sat, 22 Apr 2017 23:20:17 +0000 (01:20 +0200)]
fix #6578 name cache for hybrid formulas

7 years agocleanup
Andreas Müller [Sat, 22 Apr 2017 23:19:41 +0000 (01:19 +0200)]
cleanup

7 years agofix #6577 implement sp. nov. parser
Andreas Müller [Sat, 22 Apr 2017 19:02:55 +0000 (21:02 +0200)]
fix #6577 implement sp. nov. parser

7 years agocleanup
Andreas Müller [Sat, 22 Apr 2017 13:40:34 +0000 (15:40 +0200)]
cleanup

7 years agofix #6557 implement basionym relation creator
Andreas Müller [Sat, 22 Apr 2017 13:35:15 +0000 (15:35 +0200)]
fix #6557 implement basionym relation creator

7 years agoadd preference predicate biocaseProviderList and AbcdConfigurattor
Katja Luther [Fri, 21 Apr 2017 13:11:25 +0000 (15:11 +0200)]
add preference predicate biocaseProviderList and AbcdConfigurattor

7 years agofix siblings import and source reference import
Katja Luther [Fri, 21 Apr 2017 13:10:09 +0000 (15:10 +0200)]
fix siblings import and source reference import

7 years agofix smaller issues in outputmodel export
Katja Luther [Fri, 21 Apr 2017 13:07:20 +0000 (15:07 +0200)]
fix smaller issues in outputmodel export

7 years agoAvoid dependency to org.codehaus.plexus.util.StringUtils
Patrick Plitzner [Wed, 19 Apr 2017 06:43:28 +0000 (08:43 +0200)]
Avoid dependency to org.codehaus.plexus.util.StringUtils

7 years agoavoid NPE in Outputmodel export
Katja Luther [Thu, 13 Apr 2017 12:10:34 +0000 (14:10 +0200)]
avoid NPE in Outputmodel export

7 years agosome code cleaning and improvement of siblings search
Katja Luther [Thu, 13 Apr 2017 11:41:45 +0000 (13:41 +0200)]
some code cleaning and improvement of siblings search

7 years agominor
Katja Luther [Wed, 12 Apr 2017 13:21:17 +0000 (15:21 +0200)]
minor

7 years agoref #6166: parsing of siblings and search for siblings in different accessPoints
Katja Luther [Wed, 12 Apr 2017 13:12:37 +0000 (15:12 +0200)]
ref #6166: parsing of siblings and search for siblings in different accessPoints

7 years agoref #5752 Adapt implementations to new wrapper for lucene exceptions
Patrick Plitzner [Fri, 7 Apr 2017 15:51:22 +0000 (17:51 +0200)]
ref #5752 Adapt implementations to new wrapper for lucene exceptions

7 years agoref #6524 first version, but still missing getStatusByStatusStr implementation
Andreas Müller [Fri, 7 Apr 2017 14:19:41 +0000 (16:19 +0200)]
ref #6524 first version, but still missing getStatusByStatusStr implementation

7 years agocleanup
Andreas Müller [Fri, 7 Apr 2017 14:13:32 +0000 (16:13 +0200)]
cleanup

7 years agoref #5752 wrap lucene exception for name and occurrence service
Patrick Plitzner [Fri, 7 Apr 2017 13:39:56 +0000 (15:39 +0200)]
ref #5752 wrap lucene exception for name and occurrence service

7 years agoref #5752 wrap specific exception to avoid dependency on lucene library
Patrick Plitzner [Fri, 7 Apr 2017 10:41:58 +0000 (12:41 +0200)]
ref #5752 wrap specific exception to avoid dependency on lucene library

7 years agocleanup
Andreas Müller [Thu, 6 Apr 2017 12:36:09 +0000 (14:36 +0200)]
cleanup

7 years agoref #6524 create import class for FauEu distribution import
Andreas Müller [Tue, 4 Apr 2017 21:37:52 +0000 (23:37 +0200)]
ref #6524 create import class for FauEu distribution import

7 years agocleanup
Andreas Müller [Tue, 4 Apr 2017 21:37:11 +0000 (23:37 +0200)]
cleanup

7 years agominor and cleanup
Andreas Müller [Thu, 6 Apr 2017 12:24:25 +0000 (14:24 +0200)]
minor and cleanup

7 years agoadapt GrantedAuthorityImpl factory method
Andreas Müller [Thu, 6 Apr 2017 11:26:38 +0000 (13:26 +0200)]
adapt GrantedAuthorityImpl factory method

7 years agoadapt ABCD and GBIF imports to requirements of algae specimen and obeservation imports
Katja Luther [Thu, 6 Apr 2017 08:52:01 +0000 (10:52 +0200)]
adapt ABCD and GBIF imports to requirements of algae specimen and obeservation imports

7 years agoref #6314: adapt outputmodel export for protected titlecaches and add fact_type to...
Katja Luther [Thu, 6 Apr 2017 08:47:41 +0000 (10:47 +0200)]
ref #6314: adapt outputmodel export for protected titlecaches and add fact_type to source table

7 years agofix #6480: fix some problems in delete of specimen
Katja Luther [Thu, 6 Apr 2017 08:42:50 +0000 (10:42 +0200)]
fix #6480: fix some problems in delete of specimen

7 years agoref #6546 avoid add() with index if not necessary
Andreas Müller [Tue, 4 Apr 2017 20:50:14 +0000 (22:50 +0200)]
ref #6546 avoid add() with index if not necessary

7 years agocleanup
Andreas Müller [Tue, 4 Apr 2017 20:48:40 +0000 (22:48 +0200)]
cleanup

7 years agominor
Andreas Müller [Thu, 30 Mar 2017 14:25:48 +0000 (16:25 +0200)]
minor

7 years agoref #6314: add factual data export to outputmodel export
Katja Luther [Mon, 3 Apr 2017 07:43:58 +0000 (09:43 +0200)]
ref #6314: add factual data export to outputmodel export

7 years agoadd featureTreeTitle and uuidFeatureTree to import configurator base
unknown [Wed, 29 Mar 2017 15:01:46 +0000 (17:01 +0200)]
add featureTreeTitle and uuidFeatureTree to import configurator base

7 years agocleanup
unknown [Wed, 29 Mar 2017 14:50:55 +0000 (16:50 +0200)]
cleanup

7 years agocode cleaning
Katja Luther [Wed, 29 Mar 2017 13:54:48 +0000 (15:54 +0200)]
code cleaning

7 years agoref #6519: missed to adapt the other exports
Katja Luther [Wed, 29 Mar 2017 13:49:57 +0000 (15:49 +0200)]
ref #6519: missed to adapt the other exports

7 years agoref #6519: minor
Katja Luther [Wed, 29 Mar 2017 12:50:48 +0000 (14:50 +0200)]
ref #6519: minor

7 years agofix csvDemoExport
Katja Luther [Wed, 29 Mar 2017 12:33:41 +0000 (14:33 +0200)]
fix csvDemoExport

7 years agoref #6519: adapt csv demo exports to the new exportResult and exportResultDataWrapper
Katja Luther [Wed, 29 Mar 2017 10:45:46 +0000 (12:45 +0200)]
ref #6519: adapt csv demo exports to the new exportResult and exportResultDataWrapper

7 years agoref #6314: add classification in taxon table, smaller fixes
Katja Luther [Wed, 29 Mar 2017 08:51:06 +0000 (10:51 +0200)]
ref #6314: add classification in taxon table, smaller fixes

7 years agoref #6314: add nomenclatural author table
Katja Luther [Tue, 28 Mar 2017 12:39:30 +0000 (14:39 +0200)]
ref #6314: add nomenclatural author table

7 years agoref #6314: smaller changes
Katja Luther [Tue, 28 Mar 2017 08:51:06 +0000 (10:51 +0200)]
ref  #6314: smaller changes

7 years agoadd saveOrUpdate to ICommonService
unknown [Mon, 27 Mar 2017 10:38:07 +0000 (12:38 +0200)]
add saveOrUpdate to ICommonService

7 years agocleanup
unknown [Mon, 27 Mar 2017 10:37:36 +0000 (12:37 +0200)]
cleanup

7 years agofix #6531 add wfo identifier uuid to DefinedTerm class
unknown [Mon, 27 Mar 2017 10:37:23 +0000 (12:37 +0200)]
fix #6531 add wfo identifier uuid to DefinedTerm class

7 years agofix #6542 name identifier import
unknown [Mon, 27 Mar 2017 10:34:40 +0000 (12:34 +0200)]
fix #6542 name identifier import

7 years agoref #6541 fix failing imports with check
unknown [Sat, 25 Mar 2017 01:21:56 +0000 (02:21 +0100)]
ref #6541  fix failing imports with check

7 years agocleanup
unknown [Sat, 25 Mar 2017 00:46:45 +0000 (01:46 +0100)]
cleanup

7 years agoref #6541 first version of ImportResult implemented
unknown [Fri, 24 Mar 2017 19:41:49 +0000 (20:41 +0100)]
ref #6541 first version of ImportResult implemented

7 years agoref #6541 first version of ImportResult implemented
unknown [Fri, 24 Mar 2017 19:28:53 +0000 (20:28 +0100)]
ref #6541 first version of ImportResult implemented

7 years agoCleanup
unknown [Fri, 24 Mar 2017 19:11:36 +0000 (20:11 +0100)]
Cleanup

7 years agocleanup
unknown [Fri, 24 Mar 2017 17:17:16 +0000 (18:17 +0100)]
cleanup

7 years agocleanup
unknown [Fri, 24 Mar 2017 15:38:02 +0000 (16:38 +0100)]
cleanup

7 years agocleanup
unknown [Fri, 24 Mar 2017 15:05:21 +0000 (16:05 +0100)]
cleanup

7 years agoref #6314: smaller fixes, creation of tropicos full name string, creation of final...
Katja Luther [Thu, 23 Mar 2017 09:34:07 +0000 (10:34 +0100)]
ref #6314: smaller fixes, creation of tropicos full name string, creation of final result etc