cdmlib.git
6 years agoref #6720 fix integer to string in occurrence search
Andreas Müller [Tue, 8 May 2018 22:23:27 +0000 (00:23 +0200)]
ref #6720 fix integer to string in occurrence search

6 years agoref #6752 implement verbatimDate for Reference (Parser and Formatter still missing)
Andreas Müller [Tue, 8 May 2018 16:02:33 +0000 (18:02 +0200)]
ref #6752 implement verbatimDate for Reference (Parser and Formatter still missing)

6 years agofix TimePeriod hashCode
Andreas Müller [Tue, 8 May 2018 16:00:29 +0000 (18:00 +0200)]
fix TimePeriod hashCode

6 years agocleanup
Andreas Müller [Tue, 8 May 2018 15:59:07 +0000 (17:59 +0200)]
cleanup

6 years agoref #6720 make individualCount a string
Andreas Müller [Tue, 8 May 2018 12:54:54 +0000 (14:54 +0200)]
ref #6720 make individualCount a string

6 years agocleanup
Andreas Müller [Tue, 8 May 2018 12:53:46 +0000 (14:53 +0200)]
cleanup

6 years agoref #7096 add symbol2 to xmltype
Andreas Müller [Tue, 8 May 2018 12:13:53 +0000 (14:13 +0200)]
ref #7096 add symbol2 to xmltype

6 years agoref #7238 adapt xmltype for familyName and givenName
Andreas Müller [Tue, 8 May 2018 12:13:18 +0000 (14:13 +0200)]
ref #7238 adapt xmltype for familyName and givenName

6 years agoref #7210 add salt to FirstDataInserterTest test data
Andreas Müller [Tue, 8 May 2018 11:55:30 +0000 (13:55 +0200)]
ref #7210 add salt to FirstDataInserterTest test data

6 years agoref #6699 remove term version from FirstDataInserterTest test data
Andreas Müller [Tue, 8 May 2018 11:54:53 +0000 (13:54 +0200)]
ref #6699 remove term version from FirstDataInserterTest test data

6 years agocleanup
Andreas Müller [Tue, 8 May 2018 11:54:11 +0000 (13:54 +0200)]
cleanup

6 years agoref #6581 preliminary revert some changes for making nomenclaturalReference an Origin...
Andreas Müller [Tue, 8 May 2018 11:46:06 +0000 (13:46 +0200)]
ref #6581 preliminary revert some changes for making nomenclaturalReference an OriginalSource

6 years agoref #2335 adapt test data schema for identifiable DescriptiveDataSet
Andreas Müller [Tue, 8 May 2018 11:34:03 +0000 (13:34 +0200)]
ref #2335 adapt test data schema for identifiable DescriptiveDataSet

6 years agoref #6581 add TaxonName.nomenclaturalSource_id and adapt constructor visibility for...
Andreas Müller [Tue, 8 May 2018 11:24:52 +0000 (13:24 +0200)]
ref #6581 add TaxonName.nomenclaturalSource_id and adapt constructor visibility for DescriptionElementSource

6 years agoref #7238 fix givenname camelCase issue in AgentDaoImplTest
Andreas Müller [Tue, 8 May 2018 10:57:52 +0000 (12:57 +0200)]
ref #7238 fix givenname camelCase issue in AgentDaoImplTest

6 years agoref #7210 fix salt in dataset.dtd
Andreas Müller [Tue, 8 May 2018 10:37:07 +0000 (12:37 +0200)]
ref #7210 fix salt in dataset.dtd

6 years agoref #6588 add uuids to ExternalLinkType
Andreas Müller [Tue, 8 May 2018 10:36:21 +0000 (12:36 +0200)]
ref #6588 add uuids to ExternalLinkType

6 years agoref #6581 add uuid to OriginalSourceType.NomenclaturalReference
Andreas Müller [Tue, 8 May 2018 08:24:57 +0000 (10:24 +0200)]
ref #6581 add uuid to OriginalSourceType.NomenclaturalReference

6 years agoref #6916 add OriginalSourceBase to IntextReference
Andreas Müller [Tue, 8 May 2018 08:15:42 +0000 (10:15 +0200)]
ref #6916 add OriginalSourceBase to IntextReference

6 years agofix #6943 add zoological in-authors to TaxonName
Andreas Müller [Tue, 8 May 2018 07:02:34 +0000 (09:02 +0200)]
fix #6943 add zoological in-authors to TaxonName

6 years agofix #7210 Add salt for User
Andreas Müller [Tue, 8 May 2018 06:22:57 +0000 (08:22 +0200)]
fix #7210 Add salt for User

6 years agoref #7238 rename lastName and firstName
Andreas Müller [Mon, 7 May 2018 23:22:04 +0000 (01:22 +0200)]
ref #7238 rename lastName and firstName

6 years agofix #7276 Make User.emailAddress a unique field
Andreas Müller [Mon, 7 May 2018 21:19:53 +0000 (23:19 +0200)]
fix #7276  Make User.emailAddress a unique field

6 years agoref #6879 fix stepName
Andreas Müller [Mon, 7 May 2018 20:59:22 +0000 (22:59 +0200)]
ref #6879 fix stepName

6 years agofix #7405 Rename WorkingSet to DescriptiveDataSet
Andreas Müller [Mon, 7 May 2018 20:57:36 +0000 (22:57 +0200)]
fix #7405 Rename WorkingSet to DescriptiveDataSet

6 years agocleanup
Andreas Müller [Mon, 7 May 2018 19:26:09 +0000 (21:26 +0200)]
cleanup

6 years agofix #7374 Set titleCache of feature trees to protected
Andreas Müller [Mon, 7 May 2018 19:25:50 +0000 (21:25 +0200)]
fix #7374 Set titleCache of feature trees to protected

6 years agofix #2335 Make WorkingSet IdentifiableEntity
Andreas Müller [Mon, 7 May 2018 16:50:49 +0000 (18:50 +0200)]
fix #2335 Make WorkingSet IdentifiableEntity

6 years agofix #6879 Update uuid and name for admin user group
Andreas Müller [Mon, 7 May 2018 15:46:16 +0000 (17:46 +0200)]
fix #6879 Update uuid and name for admin user group

6 years agofix #7096 Add second symbol attribute to DefinedTermBase
Andreas Müller [Mon, 7 May 2018 15:38:52 +0000 (17:38 +0200)]
fix #7096 Add second symbol attribute to DefinedTermBase

6 years agoref #7109 Rename nom. valid to nom. val.
Andreas Müller [Mon, 7 May 2018 15:24:30 +0000 (17:24 +0200)]
ref #7109 Rename nom. valid to nom. val.

6 years agoref #6581 add DescriptionElementSource to TaxonName import
Andreas Müller [Mon, 7 May 2018 14:59:10 +0000 (16:59 +0200)]
ref #6581 add DescriptionElementSource to TaxonName import

6 years agoref #6581 nomRef to OriginalSource allow setNomRef by Interface for compiling
Andreas Müller [Fri, 9 Jun 2017 13:23:45 +0000 (15:23 +0200)]
ref #6581 nomRef to OriginalSource allow setNomRef by Interface for compiling

6 years agoref #6588 fist untested implementation of externalLink
Andreas Müller [Fri, 9 Jun 2017 09:51:50 +0000 (11:51 +0200)]
ref #6588 fist untested implementation of externalLink

6 years agocleanup
Andreas Müller [Fri, 9 Jun 2017 09:47:43 +0000 (11:47 +0200)]
cleanup

6 years agoref #6581 first incomplete version for making nomenclatural reference an orginal...
Andreas Müller [Fri, 9 Jun 2017 08:19:06 +0000 (10:19 +0200)]
ref #6581 first incomplete version for making nomenclatural reference an orginal source

6 years agoinitialize CDM 4.9 schema update
Andreas Müller [Fri, 9 Jun 2017 08:18:05 +0000 (10:18 +0200)]
initialize CDM 4.9 schema update

6 years agoadd the possibility to search for classifications in getTaxonNodeUuidAndTitleCacheOfA...
Katja Luther [Wed, 9 May 2018 10:57:03 +0000 (12:57 +0200)]
add the possibility to search for classifications in getTaxonNodeUuidAndTitleCacheOfAcceptedTaxaByClassification

6 years agominor
Katja Luther [Mon, 7 May 2018 11:58:35 +0000 (13:58 +0200)]
minor

6 years agosmaller changes in ABCD import
Katja Luther [Mon, 7 May 2018 10:18:06 +0000 (12:18 +0200)]
smaller changes in ABCD import

6 years agoFix BioCaseQuery test
Patrick Plitzner [Mon, 7 May 2018 11:32:52 +0000 (13:32 +0200)]
Fix BioCaseQuery test

6 years agoadd new longRunningTasksService for monitored operations
Katja Luther [Mon, 7 May 2018 09:23:54 +0000 (11:23 +0200)]
add new longRunningTasksService for monitored operations

6 years agocleanup
Andreas Müller [Sun, 6 May 2018 13:01:03 +0000 (15:01 +0200)]
cleanup

6 years agosome minor changes in CacheUpdater (also add PolytomousKey)
Andreas Müller [Fri, 4 May 2018 11:11:48 +0000 (13:11 +0200)]
some minor changes in CacheUpdater (also add PolytomousKey)

6 years agocleanup
Andreas Müller [Fri, 4 May 2018 11:11:09 +0000 (13:11 +0200)]
cleanup

6 years agoref #6526 extract comparator and add another for TypeDesignationBase
Patrick Plitzner [Thu, 3 May 2018 11:51:59 +0000 (13:51 +0200)]
ref #6526 extract comparator and add another for TypeDesignationBase

6 years agoref #6359, ref #3740 (setSubtree) some further improvements, mostly for publish
Andreas Müller [Thu, 3 May 2018 11:33:24 +0000 (13:33 +0200)]
ref #6359, ref #3740 (setSubtree) some further improvements, mostly for publish

6 years agoadd bean initializing to TaxonNodeServiceImpl.loadChildNodesOfTaxonNode again
Andreas Müller [Thu, 3 May 2018 10:31:35 +0000 (12:31 +0200)]
add bean initializing to TaxonNodeServiceImpl.loadChildNodesOfTaxonNode again

6 years agoref #6359, ref #3740 (setSubtree) add progress monitor progress computation, first...
Andreas Müller [Thu, 3 May 2018 10:02:55 +0000 (12:02 +0200)]
ref #6359, ref #3740 (setSubtree) add progress monitor progress computation, first version of partitioning

6 years agocleanup
Andreas Müller [Thu, 3 May 2018 09:55:12 +0000 (11:55 +0200)]
cleanup

6 years agoRevert "revert additional load of taxa in set secundum"
Katja Luther [Thu, 3 May 2018 08:41:16 +0000 (10:41 +0200)]
Revert "revert additional load of taxa in set secundum"

This reverts commit b04bb7755d1331fcce1d0693f23d063b2d8ad7f0.

6 years agorevert additional load of taxa in set secundum
Katja Luther [Wed, 2 May 2018 13:40:44 +0000 (15:40 +0200)]
revert additional load of taxa in set secundum

6 years agoref #6241 replaced @created by @since in cdmlib
Andreas Müller [Wed, 2 May 2018 12:00:42 +0000 (14:00 +0200)]
ref #6241 replaced @created by @since in cdmlib

6 years agocleanup and add test for any functional testing
Andreas Müller [Mon, 30 Apr 2018 13:07:18 +0000 (15:07 +0200)]
cleanup and add test for any functional testing

6 years agoadd functional test for Source class
Andreas Müller [Mon, 30 Apr 2018 13:04:29 +0000 (15:04 +0200)]
add functional test for Source class

6 years agocleanup
Andreas Müller [Mon, 30 Apr 2018 12:59:12 +0000 (14:59 +0200)]
cleanup

6 years agoref #6806 Remove saving in service methods
Patrick Plitzner [Mon, 30 Apr 2018 13:01:31 +0000 (15:01 +0200)]
ref #6806 Remove saving in service methods

6 years agoadd debugging in ResultSetPartitioner
Andreas Müller [Mon, 30 Apr 2018 12:49:06 +0000 (14:49 +0200)]
add debugging in ResultSetPartitioner

6 years agoremove unwanted commits
Andreas Müller [Mon, 30 Apr 2018 12:48:08 +0000 (14:48 +0200)]
remove unwanted commits

6 years agoignore testDoResolveAndPage_1 as it gives strange results, maybe related to changes...
Andreas Müller [Mon, 30 Apr 2018 12:46:51 +0000 (14:46 +0200)]
ignore testDoResolveAndPage_1 as it gives strange results, maybe related to changes in ref #7392

6 years agocleanup
Andreas Müller [Mon, 30 Apr 2018 12:46:05 +0000 (14:46 +0200)]
cleanup

6 years agoref #7392 remove cascade from relationships and adapt tests (up to service layer)
Andreas Müller [Mon, 30 Apr 2018 12:28:19 +0000 (14:28 +0200)]
ref #7392 remove cascade from relationships and adapt tests (up to service layer)

6 years agocleanup
Andreas Müller [Mon, 30 Apr 2018 08:33:13 +0000 (10:33 +0200)]
cleanup

6 years agoref #7388 fix error in new removeRelationWithTaxonName
Andreas Müller [Sat, 28 Apr 2018 22:00:00 +0000 (00:00 +0200)]
ref #7388 fix error in new removeRelationWithTaxonName

6 years agocleanup
Andreas Müller [Sat, 28 Apr 2018 21:21:39 +0000 (23:21 +0200)]
cleanup

6 years agocleanup
Andreas Müller [Sat, 28 Apr 2018 21:21:39 +0000 (23:21 +0200)]
cleanup

6 years agoref #7386 fix error in new getRelatedNames method
Andreas Müller [Sat, 28 Apr 2018 21:21:25 +0000 (23:21 +0200)]
ref #7386 fix error in new getRelatedNames method

6 years agoref #7386 reducing redundancy in name relationship handling methods, adding methods...
Andreas Kohlbecker [Sat, 28 Apr 2018 15:11:26 +0000 (17:11 +0200)]
ref #7386 reducing redundancy in name relationship handling methods, adding methods for general use

6 years agoref #7384 change order for SpecimenTypeDesignationStatus
Andreas Müller [Fri, 27 Apr 2018 12:49:52 +0000 (14:49 +0200)]
ref #7384 change order for SpecimenTypeDesignationStatus

6 years agofixing TeamAutoBeanInitializer mapping in test class
Andreas Kohlbecker [Fri, 27 Apr 2018 10:14:56 +0000 (12:14 +0200)]
fixing TeamAutoBeanInitializer mapping in test class

6 years agomapping TeamAutoInitializer to abstract base class and documentation
Andreas Kohlbecker [Fri, 27 Apr 2018 09:15:11 +0000 (11:15 +0200)]
mapping TeamAutoInitializer to abstract base class and documentation

6 years agoref #7377 modifying test to avoid autoflush
Andreas Kohlbecker [Fri, 27 Apr 2018 08:32:17 +0000 (10:32 +0200)]
ref #7377 modifying test to avoid autoflush

6 years agomore bean initialization tests & found bug ref #7375
Andreas Kohlbecker [Fri, 27 Apr 2018 07:06:45 +0000 (09:06 +0200)]
more bean initialization tests & found bug ref #7375

6 years agoTeamAutoInitializer implemented
Andreas Kohlbecker [Fri, 27 Apr 2018 07:05:27 +0000 (09:05 +0200)]
TeamAutoInitializer implemented

6 years agoref #7368 add transient also to CdmBase.isPersited
Andreas Müller [Thu, 26 Apr 2018 12:47:53 +0000 (14:47 +0200)]
ref #7368 add transient also to CdmBase.isPersited

6 years agoref #7369 remove unwanted commits
Andreas Müller [Thu, 26 Apr 2018 12:43:50 +0000 (14:43 +0200)]
ref #7369 remove unwanted commits

6 years agoref #7369 add uuids for taxonomic valueless marker to BM transformer
Andreas Müller [Thu, 26 Apr 2018 12:41:47 +0000 (14:41 +0200)]
ref #7369 add uuids for taxonomic valueless marker to BM transformer

6 years agoref #7095 Code clean up and refactoring
Patrick Plitzner [Wed, 25 Apr 2018 15:23:31 +0000 (17:23 +0200)]
ref #7095 Code clean up and refactoring

6 years agoref #7095 Retrieve only distinct SpecimenNodeWrapper objects
Patrick Plitzner [Wed, 25 Apr 2018 15:17:06 +0000 (17:17 +0200)]
ref #7095 Retrieve only distinct SpecimenNodeWrapper objects

6 years agoref #7095 Enhance quicker service for taxon associated specimens
Patrick Plitzner [Wed, 25 Apr 2018 12:44:29 +0000 (14:44 +0200)]
ref #7095 Enhance quicker service for taxon associated specimens

6 years agoref #7368 isPersisted() @Transient and doc
Andreas Kohlbecker [Wed, 25 Apr 2018 08:39:18 +0000 (10:39 +0200)]
ref #7368 isPersisted() @Transient and doc

6 years agofix #7368 implementing isPersisted() in CdmBase
Andreas Kohlbecker [Wed, 25 Apr 2018 07:46:09 +0000 (09:46 +0200)]
fix #7368 implementing isPersisted() in CdmBase

6 years agoref #7095 Implement quicker service for taxon associated specimens
Patrick Plitzner [Tue, 24 Apr 2018 16:12:33 +0000 (18:12 +0200)]
ref #7095 Implement quicker service for taxon associated specimens

6 years agoadd preference predicates
Katja Luther [Mon, 23 Apr 2018 12:24:32 +0000 (14:24 +0200)]
add preference predicates

6 years agoref #6241 change @date to @since (fix)
Andreas Müller [Mon, 23 Apr 2018 11:53:31 +0000 (13:53 +0200)]
ref #6241  change @date to @since (fix)

6 years agoref #6241 change @date to @since
Andreas Müller [Mon, 23 Apr 2018 10:01:12 +0000 (12:01 +0200)]
ref #6241  change @date to @since

6 years agoref #7357 fix clone for quantitativeData and StatisticalMeasurementValue
Andreas Müller [Mon, 23 Apr 2018 09:39:37 +0000 (11:39 +0200)]
ref #7357 fix clone for quantitativeData and StatisticalMeasurementValue

6 years agocleanup and move clone test methods to specific classes
Andreas Müller [Mon, 23 Apr 2018 09:39:00 +0000 (11:39 +0200)]
cleanup and move clone test methods to specific classes

6 years agocleanup
Andreas Müller [Mon, 23 Apr 2018 08:31:37 +0000 (10:31 +0200)]
cleanup

6 years agoref #7357 fix test for CategorialData.clone and move it from DescriptionElementTest...
Andreas Müller [Mon, 23 Apr 2018 08:31:24 +0000 (10:31 +0200)]
ref #7357 fix test for CategorialData.clone and move it from DescriptionElementTest to CategoricalDataTest

6 years agoref #7095 Speed up specimen loading for working sets
Patrick Plitzner [Fri, 20 Apr 2018 07:40:16 +0000 (09:40 +0200)]
ref #7095 Speed up specimen loading for working sets

6 years agoref #7095 Add dao method for listing UuidAndTitleCache object
Patrick Plitzner [Fri, 20 Apr 2018 06:33:32 +0000 (08:33 +0200)]
ref #7095 Add dao method for listing UuidAndTitleCache object

6 years agoref #7095 Add dao method for individually associated specimens
Patrick Plitzner [Thu, 19 Apr 2018 15:06:39 +0000 (17:06 +0200)]
ref #7095 Add dao method for individually associated specimens

6 years agoref #7095 Speed up specimen loading
Patrick Plitzner [Thu, 19 Apr 2018 12:41:59 +0000 (14:41 +0200)]
ref #7095 Speed up specimen loading

6 years agoFix cloning of StateData of CategoricalData
Patrick Plitzner [Wed, 18 Apr 2018 15:50:01 +0000 (17:50 +0200)]
Fix cloning of StateData of CategoricalData

6 years agoref #7360 also TaxonNames must never be orphan
Andreas Kohlbecker [Fri, 20 Apr 2018 19:22:58 +0000 (21:22 +0200)]
ref #7360 also TaxonNames must never be orphan

6 years agofix #7360 ReferenceVoter must never consider references orphan and thus allow deletion
Andreas Kohlbecker [Fri, 20 Apr 2018 19:16:51 +0000 (21:16 +0200)]
fix #7360 ReferenceVoter must never consider references orphan and thus allow deletion

6 years agobetter logging of voting in CdmPermissionVoter
Andreas Kohlbecker [Fri, 20 Apr 2018 19:15:21 +0000 (21:15 +0200)]
better logging of voting in CdmPermissionVoter

6 years agoref #7357 removing workaround for incomplete DerivedUnit.cone() in DerivedUnitConverter
Andreas Kohlbecker [Fri, 20 Apr 2018 14:00:42 +0000 (16:00 +0200)]
ref #7357 removing workaround for incomplete DerivedUnit.cone() in DerivedUnitConverter

6 years ago#7357 fix failing converter test in service layer after fixing typeDesignation.clone
Andreas Müller [Fri, 20 Apr 2018 12:51:35 +0000 (14:51 +0200)]
#7357 fix failing converter test in service layer after fixing typeDesignation.clone