cdmlib.git
2 years agoref #9607 remove redundant method in IMediaInfoFactory
Andreas Müller [Fri, 17 Dec 2021 22:53:42 +0000 (23:53 +0100)]
ref #9607 remove redundant method in IMediaInfoFactory

2 years agocleanup
Andreas Müller [Fri, 17 Dec 2021 22:48:40 +0000 (23:48 +0100)]
cleanup

2 years agofix exception in delete of specimen
Katja Luther [Thu, 16 Dec 2021 12:51:11 +0000 (13:51 +0100)]
fix exception in delete of specimen

2 years agoremove PermSize from cdmlib-remote-webapp launchers
Andreas Müller [Wed, 15 Dec 2021 13:31:33 +0000 (14:31 +0100)]
remove PermSize from cdmlib-remote-webapp launchers

2 years agoadd ExcelSpecimenImportTemplate.xlsx
Andreas Müller [Wed, 15 Dec 2021 13:23:56 +0000 (14:23 +0100)]
add ExcelSpecimenImportTemplate.xlsx

2 years agoref #9896 adding missing AnnotationDTO class
Andreas Kohlbecker [Fri, 10 Dec 2021 15:50:59 +0000 (16:50 +0100)]
ref  #9896 adding missing AnnotationDTO class

2 years agoadding again full ReferenceDTO to SourceDTO as the data portal needs more data
Andreas Kohlbecker [Fri, 10 Dec 2021 15:38:42 +0000 (16:38 +0100)]
adding again full ReferenceDTO to SourceDTO as the data portal needs more data

2 years agofix #9896 DerivedUnitDTO with complete set of annotationDTOs
Andreas Kohlbecker [Fri, 10 Dec 2021 14:22:05 +0000 (15:22 +0100)]
fix #9896 DerivedUnitDTO with complete set of annotationDTOs

2 years agousing the derivedUnit.titleCache as DerivedUnitDTO.summaryLabel
Andreas Kohlbecker [Thu, 9 Dec 2021 14:04:17 +0000 (15:04 +0100)]
using the derivedUnit.titleCache as DerivedUnitDTO.summaryLabel

2 years agoref #6161 improving method timing for callers & reporting reporting email not found
Andreas Kohlbecker [Mon, 6 Dec 2021 16:15:51 +0000 (17:15 +0100)]
ref #6161 improving method timing for callers & reporting reporting email not found

2 years agocleanup
Andreas Müller [Thu, 2 Dec 2021 21:33:43 +0000 (22:33 +0100)]
cleanup

2 years agoref #9809 include new authors in result.
Andreas Müller [Thu, 2 Dec 2021 16:08:34 +0000 (17:08 +0100)]
ref #9809 include new authors in result.

2 years agoref #9809 remove first "line" form source reference detail
Andreas Müller [Thu, 2 Dec 2021 16:04:07 +0000 (17:04 +0100)]
ref #9809 remove first "line" form source reference detail

2 years agoref #9809 add the source reference to newly added authors
Andreas Müller [Thu, 2 Dec 2021 16:03:12 +0000 (17:03 +0100)]
ref #9809 add the source reference to newly added authors

2 years agoref #9889 add direct matching on persistence to deduplication helper and replace...
Andreas Müller [Thu, 2 Dec 2021 14:20:41 +0000 (15:20 +0100)]
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference (cont. II)

2 years agoref #9889 add direct matching on persistence to deduplication helper and replace...
Andreas Müller [Thu, 2 Dec 2021 13:58:21 +0000 (14:58 +0100)]
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference (cont.)

2 years agoref #9889 add direct matching on persistence to deduplication helper and replace...
Andreas Müller [Thu, 2 Dec 2021 13:18:25 +0000 (14:18 +0100)]
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference

2 years agoref #9890 make the configuration of the ImportDeduplicationHelper configurable per...
Andreas Müller [Wed, 1 Dec 2021 13:07:30 +0000 (14:07 +0100)]
ref #9890 make the configuration of the ImportDeduplicationHelper configurable per import class by overriding factory method

2 years agoref #9861: featurestate save with dto
Katja Luther [Wed, 1 Dec 2021 13:54:12 +0000 (14:54 +0100)]
ref #9861: featurestate save with dto

2 years agoref #9861: termtree contains map with applicable informations
Katja Luther [Wed, 1 Dec 2021 12:52:28 +0000 (13:52 +0100)]
ref #9861: termtree contains map with applicable informations

2 years agoref #9861: termnode contains featurestate as dto
Katja Luther [Wed, 1 Dec 2021 08:21:15 +0000 (09:21 +0100)]
ref #9861: termnode contains featurestate as dto

2 years agoref #9890 move importDeduplicationHelper to import state and include state in helper...
Andreas Müller [Tue, 30 Nov 2021 12:48:05 +0000 (13:48 +0100)]
ref #9890 move importDeduplicationHelper to import state and include state in helper (cont.)

2 years agocleanup
Andreas Müller [Tue, 30 Nov 2021 12:14:58 +0000 (13:14 +0100)]
cleanup

2 years agoref #9890 move importDeduplicationHelper to import state and include state in helper...
Andreas Müller [Tue, 30 Nov 2021 12:14:14 +0000 (13:14 +0100)]
ref #9890 move importDeduplicationHelper to import state and include state in helper (state not yet used in methods)

2 years agocleanup
Andreas Müller [Mon, 29 Nov 2021 22:15:13 +0000 (23:15 +0100)]
cleanup

2 years agoref #9888 add book section handling to RIS import
Andreas Müller [Mon, 29 Nov 2021 22:14:52 +0000 (23:14 +0100)]
ref #9888 add book section handling to RIS import

2 years agoref #9359 update commons-io to 2.11.0 in cdmlib
Andreas Müller [Mon, 29 Nov 2021 14:51:42 +0000 (15:51 +0100)]
ref #9359 update commons-io to 2.11.0 in cdmlib

2 years agoref #9887 add documentation to required json-lib jdk classifier in cdmlib
Andreas Müller [Mon, 29 Nov 2021 12:53:19 +0000 (13:53 +0100)]
ref #9887 add documentation to required json-lib jdk classifier in cdmlib

2 years agominor
Andreas Müller [Mon, 29 Nov 2021 11:56:39 +0000 (12:56 +0100)]
minor

2 years agoref #9388 adding sources to MediaDTO
Andreas Kohlbecker [Fri, 26 Nov 2021 16:36:28 +0000 (17:36 +0100)]
ref #9388 adding sources to MediaDTO

2 years agocode cleaning
Andreas Kohlbecker [Fri, 26 Nov 2021 16:35:54 +0000 (17:35 +0100)]
code cleaning

2 years agocleanup
Andreas Müller [Fri, 26 Nov 2021 14:48:51 +0000 (15:48 +0100)]
cleanup

2 years agoref #9886 first implementation for cdmlib-api with only UuidAndTitleCache moved to...
Andreas Müller [Fri, 26 Nov 2021 13:51:48 +0000 (14:51 +0100)]
ref #9886 first implementation for cdmlib-api with only UuidAndTitleCache moved to new module

2 years agoref #824 remove test (testRankByNameConsistency_issue824) and cleanup
Andreas Müller [Fri, 26 Nov 2021 11:02:28 +0000 (12:02 +0100)]
ref #824 remove test (testRankByNameConsistency_issue824) and cleanup

2 years agoref #824 adapt app-import to rank.getByLatinName (cont.)
Andreas Müller [Thu, 25 Nov 2021 14:54:23 +0000 (15:54 +0100)]
ref #824 adapt app-import to rank.getByLatinName (cont.)

2 years agoref #9878 tagged text crop method
Andreas Kohlbecker [Thu, 25 Nov 2021 14:26:49 +0000 (15:26 +0100)]
ref #9878 tagged text crop method

2 years agodummy
Andreas Müller [Thu, 25 Nov 2021 13:58:10 +0000 (14:58 +0100)]
dummy

2 years agoref #824 rename Rank.getByNameXXX to getByLatinNameXXX
Andreas Müller [Thu, 25 Nov 2021 13:27:35 +0000 (14:27 +0100)]
ref #824 rename Rank.getByNameXXX to getByLatinNameXXX

2 years agoadd explanation why set test to ignore
Katja Luther [Thu, 25 Nov 2021 13:00:25 +0000 (14:00 +0100)]
add explanation why set test to ignore

2 years agocleanup
a.mueller [Thu, 25 Nov 2021 11:39:21 +0000 (12:39 +0100)]
cleanup

2 years agoignore test
Katja Luther [Thu, 25 Nov 2021 11:23:44 +0000 (12:23 +0100)]
ignore test

2 years agoref #9842: adaption in descriptivedataset service
Katja Luther [Thu, 25 Nov 2021 10:49:44 +0000 (11:49 +0100)]
ref #9842: adaption in descriptivedataset service

2 years agoref #824 test to reproduce rankByName consistency issue
Andreas Kohlbecker [Thu, 25 Nov 2021 10:43:45 +0000 (11:43 +0100)]
ref #824 test to reproduce rankByName consistency issue

2 years agoref #9842: first steps removing objects in dto creation - continue
Katja Luther [Thu, 25 Nov 2021 10:36:43 +0000 (11:36 +0100)]
ref #9842: first steps removing objects in dto creation - continue

2 years agoref #9842: first steps removing objects in dto creation - continue
Katja Luther [Thu, 25 Nov 2021 10:27:17 +0000 (11:27 +0100)]
ref #9842: first steps removing objects in dto creation - continue

2 years agoref #9842: first steps removing objects in dto creation
Katja Luther [Thu, 25 Nov 2021 09:05:01 +0000 (10:05 +0100)]
ref #9842: first steps removing objects in dto creation

2 years agoref #3811 resoring lost code line and solving "Null pointer access" problem
Andreas Kohlbecker [Wed, 24 Nov 2021 16:26:12 +0000 (17:26 +0100)]
ref #3811 resoring lost code line and solving "Null pointer access" problem

2 years agoref #9497 user account self registration: AccountCreationRequest only with email...
Andreas Kohlbecker [Wed, 24 Nov 2021 16:19:31 +0000 (17:19 +0100)]
ref #9497 user account self registration: AccountCreationRequest only with email-address
 - request tokens only with email address possible
 - refactoring request tokens class hierarchy
 - ... and token stores

2 years agoref #694 fix DescriptionElementService in httpInvokerServices.xml
Andreas Müller [Tue, 23 Nov 2021 21:09:52 +0000 (22:09 +0100)]
ref #694 fix DescriptionElementService in httpInvokerServices.xml

2 years agocleanup
Andreas Müller [Tue, 23 Nov 2021 18:01:55 +0000 (19:01 +0100)]
cleanup

2 years agoref #694 add DescriptionElementService and move some methods (cont.)
Andreas Müller [Tue, 23 Nov 2021 17:56:55 +0000 (18:56 +0100)]
ref #694 add DescriptionElementService and move some methods (cont.)

2 years agoref #694 add DescriptionElementService and move some methods
Andreas Müller [Tue, 23 Nov 2021 17:38:05 +0000 (18:38 +0100)]
ref #694 add DescriptionElementService and move some methods

2 years agocleanup and add null handling for isDeletable
Andreas Müller [Tue, 23 Nov 2021 16:33:36 +0000 (17:33 +0100)]
cleanup and add null handling for isDeletable

2 years agoremove deprecated featureTreeService and featureNodeService and test classes
Andreas Müller [Tue, 23 Nov 2021 16:32:53 +0000 (17:32 +0100)]
remove deprecated featureTreeService and featureNodeService and test classes

2 years agoremove further featureTree and featureNodeService occurrences
Andreas Müller [Tue, 23 Nov 2021 14:25:28 +0000 (15:25 +0100)]
remove further featureTree and featureNodeService occurrences

2 years agocleanup
Andreas Müller [Tue, 23 Nov 2021 13:41:02 +0000 (14:41 +0100)]
cleanup

2 years agoremove deprecated featureNodeService from ICdmRepository (cont.)
Andreas Müller [Tue, 23 Nov 2021 13:40:51 +0000 (14:40 +0100)]
remove deprecated featureNodeService from ICdmRepository (cont.)

2 years agoremove deprecated featureNodeService from ICdmRepository
Andreas Müller [Tue, 23 Nov 2021 13:40:13 +0000 (14:40 +0100)]
remove deprecated featureNodeService from ICdmRepository

2 years agoremove deprecated featureTreeService from ICdmRepository
Andreas Müller [Tue, 23 Nov 2021 13:30:46 +0000 (14:30 +0100)]
remove deprecated featureTreeService from ICdmRepository

2 years agocleanup and remove usage of feature tree service
Andreas Müller [Tue, 23 Nov 2021 12:58:17 +0000 (13:58 +0100)]
cleanup and remove usage of feature tree service

2 years agocleanup
Andreas Müller [Sat, 20 Nov 2021 09:01:28 +0000 (10:01 +0100)]
cleanup

2 years agoref #9497 AccountRegistrationService tesing for existing usernames & adding exist...
Andreas Kohlbecker [Fri, 19 Nov 2021 14:29:53 +0000 (15:29 +0100)]
ref #9497 AccountRegistrationService tesing for existing usernames & adding exist check methods to dao

2 years agoref #9497 fixing class string for IAccountRegistrationService in httpInvokerServices.xml
Andreas Kohlbecker [Fri, 19 Nov 2021 13:42:56 +0000 (14:42 +0100)]
ref #9497 fixing class string for IAccountRegistrationService in httpInvokerServices.xml

2 years agoref #9497 adding AccountRegistrationService to ICdmRepository
Andreas Kohlbecker [Fri, 19 Nov 2021 13:04:47 +0000 (14:04 +0100)]
ref #9497 adding AccountRegistrationService to ICdmRepository

2 years agocleanup and renaming some functional test classes (cont. II)
Andreas Müller [Fri, 19 Nov 2021 12:38:01 +0000 (13:38 +0100)]
cleanup and renaming some functional test classes (cont. II)

2 years agocleanup and renaming some functional test classes (cont.)
Andreas Müller [Fri, 19 Nov 2021 12:05:41 +0000 (13:05 +0100)]
cleanup and renaming some functional test classes (cont.)

2 years agocleanup and renaming some functional test classes
Andreas Müller [Fri, 19 Nov 2021 11:58:17 +0000 (12:58 +0100)]
cleanup and renaming some functional test classes

2 years agoref #9497 fixing test calls bean binding
Andreas Kohlbecker [Fri, 19 Nov 2021 08:12:04 +0000 (09:12 +0100)]
ref #9497 fixing test calls bean binding

2 years agoref #9497 adding AccountRegistrationService to http invoker config
Andreas Kohlbecker [Fri, 19 Nov 2021 07:12:32 +0000 (08:12 +0100)]
ref #9497 adding AccountRegistrationService to http invoker config

2 years agofix #9497 User self registration service implemented
Andreas Kohlbecker [Thu, 18 Nov 2021 16:50:20 +0000 (17:50 +0100)]
fix #9497 User self registration service implemented
   - more interfaces and abstract classes
   - AccountRegistrationService implemented
   - test implemented

2 years agoref #9497 AccountCreationRequest and TokenStore
Andreas Kohlbecker [Thu, 18 Nov 2021 09:57:42 +0000 (10:57 +0100)]
ref #9497 AccountCreationRequest and TokenStore

2 years agoref #9497 abstract base classes for Request tokens and stores
Andreas Kohlbecker [Thu, 18 Nov 2021 09:51:41 +0000 (10:51 +0100)]
ref #9497 abstract base classes for Request tokens and stores

2 years agoref #9758 better default settings for send mail - port number
Andreas Kohlbecker [Thu, 18 Nov 2021 09:12:30 +0000 (10:12 +0100)]
ref #9758 better default settings for send mail - port number

2 years agoref #9758 switching to other javax.mail implementation (step 2) and fixing port...
Andreas Kohlbecker [Wed, 17 Nov 2021 16:11:32 +0000 (17:11 +0100)]
ref #9758 switching to other javax.mail implementation (step 2)  and fixing port issues in test

2 years agoref #9758 switching to other javax.mail implementation
Andreas Kohlbecker [Wed, 17 Nov 2021 14:21:06 +0000 (15:21 +0100)]
ref #9758 switching to other javax.mail implementation

2 years agoref #9758 better default settings for send mail
Andreas Kohlbecker [Wed, 17 Nov 2021 10:12:19 +0000 (11:12 +0100)]
ref #9758 better default settings for send mail

2 years agoref #9802, #9843: fix display label in rowwrapper
Katja Luther [Wed, 17 Nov 2021 08:52:31 +0000 (09:52 +0100)]
ref #9802, #9843: fix display label in rowwrapper

2 years agoref #6161 fix de-duplication code for password encoding
Andreas Müller [Tue, 16 Nov 2021 22:26:14 +0000 (23:26 +0100)]
ref #6161 fix de-duplication code for password encoding

2 years agologging send email configuration
Andreas Kohlbecker [Tue, 16 Nov 2021 20:12:50 +0000 (21:12 +0100)]
logging send email configuration

2 years agominor
Andreas Müller [Tue, 16 Nov 2021 17:29:22 +0000 (18:29 +0100)]
minor

2 years agoref #9843: adapt other uses of SortableTaxonNodeQueryResult- continue
Katja Luther [Tue, 16 Nov 2021 09:21:50 +0000 (10:21 +0100)]
ref  #9843: adapt other uses of SortableTaxonNodeQueryResult- continue

2 years agoref #9843: adapt other uses of SortableTaxonNodeQueryResult- continue
Katja Luther [Mon, 15 Nov 2021 14:59:56 +0000 (15:59 +0100)]
ref  #9843: adapt other uses of SortableTaxonNodeQueryResult- continue

2 years agoref #6161 fixing read-only bug in PasswordResetService and adding support email addre...
Andreas Kohlbecker [Mon, 15 Nov 2021 14:49:17 +0000 (15:49 +0100)]
ref #6161 fixing read-only bug in PasswordResetService and adding support email address to email messages

2 years agoref #6161 de-duplicating code for password encoding
Andreas Kohlbecker [Mon, 15 Nov 2021 14:47:23 +0000 (15:47 +0100)]
ref #6161 de-duplicating code for password encoding

2 years agoref #9862 better password contraint violation message concatenation
Andreas Kohlbecker [Mon, 15 Nov 2021 14:45:16 +0000 (15:45 +0100)]
ref #9862 better password contraint violation message concatenation

2 years agoref #9843: adapt other uses of SortableTaxonNodeQueryResult
Katja Luther [Mon, 15 Nov 2021 12:56:41 +0000 (13:56 +0100)]
ref  #9843: adapt other uses of SortableTaxonNodeQueryResult

2 years agoref #9843: fix taxonnode dto creation and add parent uuid - continue
Katja Luther [Mon, 15 Nov 2021 12:18:40 +0000 (13:18 +0100)]
ref  #9843: fix taxonnode dto creation and add parent uuid - continue

2 years agoref #9843: fix taxonnode dto creation and add parent uuid
Katja Luther [Mon, 15 Nov 2021 11:35:18 +0000 (12:35 +0100)]
ref  #9843: fix taxonnode dto creation and add parent uuid

2 years agoref #6296: cleanup
Katja Luther [Mon, 15 Nov 2021 08:36:57 +0000 (09:36 +0100)]
ref #6296: cleanup

2 years agorevert session.clear() during updateCaches
Andreas Müller [Fri, 12 Nov 2021 16:35:08 +0000 (17:35 +0100)]
revert session.clear() during updateCaches

2 years agoref #5952, ref #5951 add identityCache formatting to SpecimenOrObservationBase cache...
Andreas Müller [Fri, 12 Nov 2021 16:23:52 +0000 (17:23 +0100)]
ref #5952, ref #5951 add identityCache formatting to SpecimenOrObservationBase cache strategies

2 years agocleanup
Andreas Müller [Fri, 12 Nov 2021 15:29:35 +0000 (16:29 +0100)]
cleanup

2 years agofix toString in UpdateResult
Andreas Müller [Thu, 11 Nov 2021 20:55:43 +0000 (21:55 +0100)]
fix toString in UpdateResult

2 years agoclear session in cache update
Andreas Müller [Thu, 11 Nov 2021 20:55:25 +0000 (21:55 +0100)]
clear session in cache update

2 years agofix #9862 fixing imports
Andreas Kohlbecker [Fri, 12 Nov 2021 15:03:28 +0000 (16:03 +0100)]
fix #9862 fixing imports

2 years agofix #9862 implementing central password constraint validation classes and annotation
Andreas Kohlbecker [Fri, 12 Nov 2021 14:57:37 +0000 (15:57 +0100)]
fix #9862 implementing central password constraint validation classes and annotation

2 years agodocumentation on data source property keys
Andreas Kohlbecker [Fri, 12 Nov 2021 14:56:27 +0000 (15:56 +0100)]
documentation on data source property keys

2 years agoref #6161 add passwordReset service to httpInvoker (cont. II)
Andreas Müller [Thu, 11 Nov 2021 19:19:10 +0000 (20:19 +0100)]
ref #6161 add passwordReset service to httpInvoker (cont. II)

2 years agominor
Andreas Müller [Thu, 11 Nov 2021 19:16:47 +0000 (20:16 +0100)]
minor

2 years agoref #6161 add passwordReset service to httpInvoker (cont.)
Andreas Müller [Thu, 11 Nov 2021 16:37:45 +0000 (17:37 +0100)]
ref #6161 add passwordReset service to httpInvoker (cont.)