cdmlib.git
9 years agoCreate updater for cdm36 and update schema/term version
Andreas Müller [Mon, 13 Apr 2015 17:07:39 +0000 (17:07 +0000)]
Create updater for cdm36 and update schema/term version

9 years agoAdd hasMoreMembers to Team, update script still missing #4791
Andreas Müller [Mon, 13 Apr 2015 16:58:57 +0000 (16:58 +0000)]
Add hasMoreMembers to Team, update script still missing   #4791

9 years agoCreate cdm 3.6 branch
Andreas Müller [Mon, 13 Apr 2015 15:38:32 +0000 (15:38 +0000)]
Create cdm 3.6 branch

9 years ago - reverted temporary changes for titleCache generation
Patric Plitzner [Mon, 13 Apr 2015 15:01:12 +0000 (15:01 +0000)]
 - reverted temporary changes for titleCache generation

9 years agofixed request parameter to match the convention of using the pathvariable
Alexander Oppermann [Mon, 13 Apr 2015 13:35:26 +0000 (13:35 +0000)]
fixed request parameter to match the convention of using the pathvariable

9 years ago(no commit message)
Katja Luther [Mon, 13 Apr 2015 11:46:59 +0000 (11:46 +0000)]

9 years ago - added wrapper for map service query to have access to the data points
Patric Plitzner [Mon, 13 Apr 2015 11:37:19 +0000 (11:37 +0000)]
 - added wrapper for map service query to have access to the data points
 - used data points as parameters for the bounding box of the point distribution map

9 years ago - temporarily disabled test
Patric Plitzner [Thu, 9 Apr 2015 21:42:13 +0000 (21:42 +0000)]
 - temporarily disabled test

9 years ago - quick&dirty copy&pasted getMostSignificantIdentifier() to facade cache strategy
Patric Plitzner [Thu, 9 Apr 2015 21:15:36 +0000 (21:15 +0000)]
 - quick&dirty copy&pasted getMostSignificantIdentifier() to facade cache strategy

9 years ago - fixed some design issues
Patric Plitzner [Thu, 9 Apr 2015 09:36:40 +0000 (09:36 +0000)]
 - fixed some design issues

9 years ago - fixed citation string and specimen determination string in portal assembly
Patric Plitzner [Wed, 8 Apr 2015 13:06:30 +0000 (13:06 +0000)]
 - fixed citation string and specimen determination string in portal assembly

9 years ago - fixed potential NPE
Patric Plitzner [Wed, 8 Apr 2015 12:12:35 +0000 (12:12 +0000)]
 - fixed potential NPE

9 years ago - fixed dateString assembly for compressed specimen table
Patric Plitzner [Wed, 8 Apr 2015 11:34:52 +0000 (11:34 +0000)]
 - fixed dateString assembly for compressed specimen table

9 years agoquick fix for cache strategy exception. Cache strategy not yet correctly created...
Andreas Müller [Wed, 1 Apr 2015 15:21:42 +0000 (15:21 +0000)]
quick fix for cache strategy exception. Cache strategy not yet correctly created. #4773

9 years agofirst implementation of team->person->team conversion #4769, #4770
Andreas Müller [Wed, 1 Apr 2015 03:13:45 +0000 (03:13 +0000)]
first implementation of team->person->team conversion #4769, #4770

9 years agoFix merging of names of different types test
Andreas Müller [Wed, 1 Apr 2015 01:20:20 +0000 (01:20 +0000)]
Fix merging of names of different types test

9 years agoallow different type merging not only for reallocation of links
Andreas Müller [Wed, 1 Apr 2015 01:08:33 +0000 (01:08 +0000)]
allow different type merging not only for reallocation of links

9 years agominor
Andreas Müller [Wed, 1 Apr 2015 01:07:05 +0000 (01:07 +0000)]
minor

9 years agoclean up AgentService
Andreas Müller [Wed, 1 Apr 2015 00:23:13 +0000 (00:23 +0000)]
clean up AgentService

9 years agominor
Andreas Müller [Wed, 1 Apr 2015 00:06:06 +0000 (00:06 +0000)]
minor

9 years agoremove onlyReallocate links as this is not yet implemented #4768
Andreas Müller [Wed, 1 Apr 2015 00:05:18 +0000 (00:05 +0000)]
remove onlyReallocate links as this is not yet implemented  #4768

9 years agoMake deduplication of TeamOrPersonBase possible in cdmlib #4768 and solve test probl...
Andreas Müller [Tue, 31 Mar 2015 23:59:06 +0000 (23:59 +0000)]
Make deduplication of TeamOrPersonBase possible in cdmlib #4768  and solve test problem in CdmGenericDaoImplTest #2096, finding some bugs in between

9 years ago - added service method to get the most significant identifier for a derived unit
Patric Plitzner [Tue, 31 Mar 2015 18:20:45 +0000 (18:20 +0000)]
 - added service method to get the most significant identifier for a derived unit
 - added character data icon to specimen table
 - fixed derivate flags in DTO assembly

9 years ago - added specimen citation, associated taxa and typed taxa to specimen page (#4765)
Patric Plitzner [Tue, 31 Mar 2015 14:23:18 +0000 (14:23 +0000)]
 - added specimen citation, associated taxa and typed taxa to specimen page (#4765)

9 years ago - get accessionNumber from specimen identifiers in this order accNo>barCode>catalogN...
Patric Plitzner [Tue, 31 Mar 2015 12:36:43 +0000 (12:36 +0000)]
 - get accessionNumber from specimen identifiers in this order accNo>barCode>catalogNumber
 - refactored PHP
 - added flag for specimen page in compose function

9 years ago - fixed potential NPE
Patric Plitzner [Tue, 31 Mar 2015 07:04:03 +0000 (07:04 +0000)]
 - fixed potential NPE
 - fixed herbaria assembly

9 years agoadd O'Connor and zur Strassen as parsable authors. #4759
Andreas Müller [Mon, 30 Mar 2015 15:23:29 +0000 (15:23 +0000)]
add O'Connor and zur Strassen as parsable authors.  #4759

9 years ago - added setter
Patric Plitzner [Mon, 30 Mar 2015 14:32:33 +0000 (14:32 +0000)]
 - added setter

9 years agoadd new UTF8 characters
Andreas Müller [Sat, 28 Mar 2015 10:52:23 +0000 (10:52 +0000)]
add new UTF8 characters

9 years agoFixing failing search test, using better utf8 handling
Andreas Müller [Sat, 28 Mar 2015 10:46:38 +0000 (10:46 +0000)]
Fixing failing search test, using better utf8 handling

9 years agocorrect handling of terms with multiple representations
Andreas Kohlbecker [Fri, 27 Mar 2015 21:57:25 +0000 (21:57 +0000)]
correct handling of terms with multiple representations

9 years agoimplementing better namedAreasInUse service for #3994 (Select widget to choose the...
Andreas Kohlbecker [Fri, 27 Mar 2015 17:49:53 +0000 (17:49 +0000)]
implementing better namedAreasInUse service for  #3994 (Select widget to choose the filter areas for the advanced search)

9 years agofixing broken characters
Andreas Kohlbecker [Fri, 27 Mar 2015 17:49:45 +0000 (17:49 +0000)]
fixing broken characters

9 years agoimplement clone for SingleReadAlignment
Andreas Müller [Fri, 27 Mar 2015 16:45:31 +0000 (16:45 +0000)]
implement clone for SingleReadAlignment

9 years agominor
Andreas Müller [Fri, 27 Mar 2015 16:24:43 +0000 (16:24 +0000)]
minor

9 years agofirst implementation of WrappedCdmDataSource #3910
Andreas Müller [Fri, 27 Mar 2015 16:21:33 +0000 (16:21 +0000)]
first implementation of WrappedCdmDataSource #3910

9 years agono null return type even safer
Andreas Müller [Fri, 27 Mar 2015 16:20:39 +0000 (16:20 +0000)]
no null return type even safer

9 years ago - added generic method for specimen details used in table and details page
Patric Plitzner [Fri, 27 Mar 2015 16:18:36 +0000 (16:18 +0000)]
 - added generic method for specimen details used in table and details page

9 years ago - fixed potential LIE
Patric Plitzner [Fri, 27 Mar 2015 16:17:50 +0000 (16:17 +0000)]
 - fixed potential LIE

9 years ago - fixed potential null values
Patric Plitzner [Fri, 27 Mar 2015 15:15:58 +0000 (15:15 +0000)]
 - fixed potential null values
 - added uuid to preserved specimen dto

9 years agoget Shift always returns empty array instead of null #4734
Andreas Müller [Fri, 27 Mar 2015 14:42:45 +0000 (14:42 +0000)]
get Shift always returns empty array instead of null   #4734

9 years agoremove imports
Andreas Müller [Fri, 27 Mar 2015 13:39:02 +0000 (13:39 +0000)]
remove imports

9 years agominor cleanup
Andreas Müller [Fri, 27 Mar 2015 12:54:48 +0000 (12:54 +0000)]
minor cleanup

9 years ago - refactored DTO assembly for compressed specimen table in the data portal
Patric Plitzner [Fri, 27 Mar 2015 10:40:23 +0000 (10:40 +0000)]
 - refactored DTO assembly for compressed specimen table in the data portal
  - now data is assembled for each individual preserved specimen and the for the parent field unit

9 years agomake indexing type collection a list (was Set before)
Andreas Müller [Fri, 27 Mar 2015 10:32:19 +0000 (10:32 +0000)]
make indexing type collection a list (was Set before)

9 years agoadd tests to avoid inconsistencies in recursive cdm updater calls
Andreas Müller [Thu, 26 Mar 2015 12:24:38 +0000 (12:24 +0000)]
add tests to avoid inconsistencies in recursive cdm updater calls

9 years agominimum maven version back to 3.0.5
Andreas Kohlbecker [Thu, 26 Mar 2015 08:15:01 +0000 (08:15 +0000)]
minimum maven version back to 3.0.5

9 years agolowering minimum maven version to 3.0.4
Andreas Kohlbecker [Thu, 26 Mar 2015 08:12:35 +0000 (08:12 +0000)]
lowering minimum maven version to 3.0.4

9 years agobugfix for 34_341 Updater
Andreas Müller [Wed, 25 Mar 2015 17:37:58 +0000 (17:37 +0000)]
bugfix for 34_341 Updater

9 years agonew launchers for JettyLauncher plugin, also new structure in ide folder
Andreas Kohlbecker [Wed, 25 Mar 2015 12:32:19 +0000 (12:32 +0000)]
new launchers for JettyLauncher plugin, also new structure in ide folder

9 years agosetting minimum maven version to 3.0.5 and specifying missing version of maven-projec...
Andreas Kohlbecker [Wed, 25 Mar 2015 12:32:15 +0000 (12:32 +0000)]
setting minimum maven version to 3.0.5 and specifying missing version of maven-project-info-reports-plugin

9 years agoadd test for disassamble
Andreas Müller [Tue, 24 Mar 2015 21:29:09 +0000 (21:29 +0000)]
add test for disassamble

9 years agoremove failing sqlType test
Andreas Müller [Tue, 24 Mar 2015 21:24:59 +0000 (21:24 +0000)]
remove failing sqlType test

9 years agohandle empty Shift #4734
Andreas Müller [Tue, 24 Mar 2015 21:17:01 +0000 (21:17 +0000)]
handle empty Shift #4734

9 years agomerge validation commits r23146, r23162, r23163 into trunk
Andreas Müller [Tue, 24 Mar 2015 10:57:12 +0000 (10:57 +0000)]
merge validation commits r23146, r23162, r23163 into trunk

9 years agomerge r23161 into trunk
Andreas Müller [Tue, 24 Mar 2015 10:35:07 +0000 (10:35 +0000)]
merge r23161 into trunk

9 years agomerge r23145 into trunk
Andreas Müller [Tue, 24 Mar 2015 10:31:30 +0000 (10:31 +0000)]
merge r23145 into trunk

9 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Tue, 24 Mar 2015 09:42:06 +0000 (09:42 +0000)]
[maven-release-plugin] prepare for next development iteration

9 years ago[maven-release-plugin] prepare release cdmlib-parent-3.5.0 root/tags/cdmlib/cdmlib-parent-3.5.0 cdmlib-parent-3.5.0
edit-jenkins [Tue, 24 Mar 2015 09:42:00 +0000 (09:42 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.5.0

9 years agodecoupling version of cdm-vaadin, to solve problems in the maven release:prepare...
Andreas Kohlbecker [Tue, 24 Mar 2015 09:18:14 +0000 (09:18 +0000)]
decoupling version of cdm-vaadin, to solve problems in the maven release:prepare phase

9 years agoignoring .settings
Andreas Kohlbecker [Tue, 24 Mar 2015 09:18:12 +0000 (09:18 +0000)]
ignoring .settings

9 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Mon, 23 Mar 2015 17:06:17 +0000 (17:06 +0000)]
[maven-release-plugin] prepare for next development iteration

9 years ago[maven-release-plugin] prepare release cdmlib-commons-3.5.0 attic/tags/cdmlib/cdmlib-commons-3.5.0/23151
edit-jenkins [Mon, 23 Mar 2015 17:06:16 +0000 (17:06 +0000)]
[maven-release-plugin] prepare release cdmlib-commons-3.5.0

9 years agoadd Transient to getNullSafe methods and make MarkerType not null Level2 rule
Andreas Müller [Mon, 23 Mar 2015 15:55:43 +0000 (15:55 +0000)]
add Transient to getNullSafe methods and make MarkerType not null Level2 rule

9 years agoImproved parser for zoological names...
Alexander Oppermann [Mon, 23 Mar 2015 14:30:32 +0000 (14:30 +0000)]
Improved parser for zoological names...

9 years agominor
Andreas Müller [Mon, 23 Mar 2015 12:24:34 +0000 (12:24 +0000)]
minor

9 years agofix bug in update script
Andreas Müller [Mon, 23 Mar 2015 12:15:31 +0000 (12:15 +0000)]
fix bug in update script

9 years agominor
Andreas Müller [Fri, 20 Mar 2015 21:14:41 +0000 (21:14 +0000)]
minor

9 years agounignore edit geoservice test
Andreas Müller [Fri, 20 Mar 2015 21:14:01 +0000 (21:14 +0000)]
unignore edit geoservice test

9 years agoadd listener for taxon name in determination event and run update script again
Andreas Müller [Fri, 20 Mar 2015 15:17:03 +0000 (15:17 +0000)]
add listener for taxon name in determination event and run update script again

9 years agominor
Andreas Müller [Fri, 20 Mar 2015 14:23:44 +0000 (14:23 +0000)]
minor

9 years agoupdate test H2 in remote webapp
Andreas Müller [Fri, 20 Mar 2015 14:19:48 +0000 (14:19 +0000)]
update test H2 in remote webapp

9 years agofix test environment for Identifier being Annotatable #4673
Andreas Müller [Fri, 20 Mar 2015 14:01:00 +0000 (14:01 +0000)]
fix test environment for Identifier being Annotatable #4673

9 years agofurther fixes for collectorTitle #4311
Andreas Müller [Fri, 20 Mar 2015 14:00:14 +0000 (14:00 +0000)]
further fixes for collectorTitle  #4311

9 years agofixing persistence tests on AgentBase.collectorTitle #4311
Andreas Müller [Fri, 20 Mar 2015 13:41:29 +0000 (13:41 +0000)]
fixing persistence tests on AgentBase.collectorTitle  #4311

9 years agoadd collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311
Andreas Müller [Fri, 20 Mar 2015 13:26:12 +0000 (13:26 +0000)]
add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase)  #4311

9 years agoupdate named area idInVocabularies if necessary #4140
Andreas Müller [Fri, 20 Mar 2015 12:55:50 +0000 (12:55 +0000)]
update named area idInVocabularies if necessary  #4140

9 years agomake identifier annotatable #4673
Andreas Müller [Fri, 20 Mar 2015 12:32:36 +0000 (12:32 +0000)]
make identifier annotatable #4673

9 years agomake identifier annotatable #4673
Andreas Müller [Fri, 20 Mar 2015 12:12:40 +0000 (12:12 +0000)]
make identifier annotatable #4673

9 years agominor
Andreas Müller [Fri, 20 Mar 2015 10:34:58 +0000 (10:34 +0000)]
minor

9 years agoupdate script for orphaned taxon node removal #2341
Andreas Müller [Fri, 20 Mar 2015 10:32:59 +0000 (10:32 +0000)]
update script for orphaned taxon node removal #2341

9 years agoupdate cdmlib poms from 3.4.1-SNAPSHOT to 3.5.0-SNAPSHOT
Andreas Müller [Thu, 19 Mar 2015 23:46:37 +0000 (23:46 +0000)]
update cdmlib poms from 3.4.1-SNAPSHOT to 3.5.0-SNAPSHOT

9 years agoadapt CommonService to allow collection save and add remotewebapp test H2 udpate
Andreas Müller [Thu, 19 Mar 2015 15:30:43 +0000 (15:30 +0000)]
adapt CommonService to allow collection save  and add remotewebapp test H2 udpate

9 years agoupdated cdmTest in remote webapp to new model
Andreas Müller [Thu, 19 Mar 2015 14:33:45 +0000 (14:33 +0000)]
updated cdmTest in remote webapp to new model

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:56:37 +0000 (13:56 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:56:19 +0000 (13:56 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:53:07 +0000 (13:53 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:49:54 +0000 (13:49 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:45:29 +0000 (13:45 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:29:30 +0000 (13:29 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:28:13 +0000 (13:28 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:24:42 +0000 (13:24 +0000)]
merge validation2 and model 3.5 into trunk

9 years ago - added option to cancel import
Patric Plitzner [Wed, 18 Mar 2015 08:35:15 +0000 (08:35 +0000)]
 - added option to cancel import

9 years ago - avoid duplicate taxon nodes in default classification
Patric Plitzner [Tue, 17 Mar 2015 17:07:23 +0000 (17:07 +0000)]
 - avoid duplicate taxon nodes in default classification

9 years ago - added test file
Patric Plitzner [Tue, 17 Mar 2015 17:06:22 +0000 (17:06 +0000)]
 - added test file

9 years agoremove import
Andreas Müller [Tue, 17 Mar 2015 14:55:23 +0000 (14:55 +0000)]
remove import

9 years ago - refactored code
Patric Plitzner [Tue, 17 Mar 2015 13:26:07 +0000 (13:26 +0000)]
 - refactored code

9 years ago - enhanced progress monitor
Patric Plitzner [Tue, 17 Mar 2015 13:19:46 +0000 (13:19 +0000)]
 - enhanced progress monitor

9 years ago - enhanced progress monitor
Patric Plitzner [Tue, 17 Mar 2015 13:07:10 +0000 (13:07 +0000)]
 - enhanced progress monitor
 - fixed multiple default classification creation

9 years ago - fixed potential NPE
Patric Plitzner [Tue, 17 Mar 2015 12:36:02 +0000 (12:36 +0000)]
 - fixed potential NPE