cdmlib.git
9 years agono null return type even safer
Andreas Müller [Fri, 27 Mar 2015 16:20:39 +0000 (16:20 +0000)]
no null return type even safer

9 years ago - added generic method for specimen details used in table and details page
Patric Plitzner [Fri, 27 Mar 2015 16:18:36 +0000 (16:18 +0000)]
 - added generic method for specimen details used in table and details page

9 years ago - fixed potential LIE
Patric Plitzner [Fri, 27 Mar 2015 16:17:50 +0000 (16:17 +0000)]
 - fixed potential LIE

9 years ago - fixed potential null values
Patric Plitzner [Fri, 27 Mar 2015 15:15:58 +0000 (15:15 +0000)]
 - fixed potential null values
 - added uuid to preserved specimen dto

9 years agoget Shift always returns empty array instead of null #4734
Andreas Müller [Fri, 27 Mar 2015 14:42:45 +0000 (14:42 +0000)]
get Shift always returns empty array instead of null   #4734

9 years agoremove imports
Andreas Müller [Fri, 27 Mar 2015 13:39:02 +0000 (13:39 +0000)]
remove imports

9 years agominor cleanup
Andreas Müller [Fri, 27 Mar 2015 12:54:48 +0000 (12:54 +0000)]
minor cleanup

9 years ago - refactored DTO assembly for compressed specimen table in the data portal
Patric Plitzner [Fri, 27 Mar 2015 10:40:23 +0000 (10:40 +0000)]
 - refactored DTO assembly for compressed specimen table in the data portal
  - now data is assembled for each individual preserved specimen and the for the parent field unit

9 years agomake indexing type collection a list (was Set before)
Andreas Müller [Fri, 27 Mar 2015 10:32:19 +0000 (10:32 +0000)]
make indexing type collection a list (was Set before)

9 years agoadd tests to avoid inconsistencies in recursive cdm updater calls
Andreas Müller [Thu, 26 Mar 2015 12:24:38 +0000 (12:24 +0000)]
add tests to avoid inconsistencies in recursive cdm updater calls

9 years agominimum maven version back to 3.0.5
Andreas Kohlbecker [Thu, 26 Mar 2015 08:15:01 +0000 (08:15 +0000)]
minimum maven version back to 3.0.5

9 years agolowering minimum maven version to 3.0.4
Andreas Kohlbecker [Thu, 26 Mar 2015 08:12:35 +0000 (08:12 +0000)]
lowering minimum maven version to 3.0.4

9 years agobugfix for 34_341 Updater
Andreas Müller [Wed, 25 Mar 2015 17:37:58 +0000 (17:37 +0000)]
bugfix for 34_341 Updater

9 years agonew launchers for JettyLauncher plugin, also new structure in ide folder
Andreas Kohlbecker [Wed, 25 Mar 2015 12:32:19 +0000 (12:32 +0000)]
new launchers for JettyLauncher plugin, also new structure in ide folder

9 years agosetting minimum maven version to 3.0.5 and specifying missing version of maven-projec...
Andreas Kohlbecker [Wed, 25 Mar 2015 12:32:15 +0000 (12:32 +0000)]
setting minimum maven version to 3.0.5 and specifying missing version of maven-project-info-reports-plugin

9 years agoadd test for disassamble
Andreas Müller [Tue, 24 Mar 2015 21:29:09 +0000 (21:29 +0000)]
add test for disassamble

9 years agoremove failing sqlType test
Andreas Müller [Tue, 24 Mar 2015 21:24:59 +0000 (21:24 +0000)]
remove failing sqlType test

9 years agohandle empty Shift #4734
Andreas Müller [Tue, 24 Mar 2015 21:17:01 +0000 (21:17 +0000)]
handle empty Shift #4734

9 years agomerge validation commits r23146, r23162, r23163 into trunk
Andreas Müller [Tue, 24 Mar 2015 10:57:12 +0000 (10:57 +0000)]
merge validation commits r23146, r23162, r23163 into trunk

9 years agomerge r23161 into trunk
Andreas Müller [Tue, 24 Mar 2015 10:35:07 +0000 (10:35 +0000)]
merge r23161 into trunk

9 years agomerge r23145 into trunk
Andreas Müller [Tue, 24 Mar 2015 10:31:30 +0000 (10:31 +0000)]
merge r23145 into trunk

9 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Tue, 24 Mar 2015 09:42:06 +0000 (09:42 +0000)]
[maven-release-plugin] prepare for next development iteration

9 years ago[maven-release-plugin] prepare release cdmlib-parent-3.5.0 root/tags/cdmlib/cdmlib-parent-3.5.0 cdmlib-parent-3.5.0
edit-jenkins [Tue, 24 Mar 2015 09:42:00 +0000 (09:42 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.5.0

9 years agodecoupling version of cdm-vaadin, to solve problems in the maven release:prepare...
Andreas Kohlbecker [Tue, 24 Mar 2015 09:18:14 +0000 (09:18 +0000)]
decoupling version of cdm-vaadin, to solve problems in the maven release:prepare phase

9 years agoignoring .settings
Andreas Kohlbecker [Tue, 24 Mar 2015 09:18:12 +0000 (09:18 +0000)]
ignoring .settings

9 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Mon, 23 Mar 2015 17:06:17 +0000 (17:06 +0000)]
[maven-release-plugin] prepare for next development iteration

9 years ago[maven-release-plugin] prepare release cdmlib-commons-3.5.0 attic/tags/cdmlib/cdmlib-commons-3.5.0/23151
edit-jenkins [Mon, 23 Mar 2015 17:06:16 +0000 (17:06 +0000)]
[maven-release-plugin] prepare release cdmlib-commons-3.5.0

9 years agoadd Transient to getNullSafe methods and make MarkerType not null Level2 rule
Andreas Müller [Mon, 23 Mar 2015 15:55:43 +0000 (15:55 +0000)]
add Transient to getNullSafe methods and make MarkerType not null Level2 rule

9 years agoImproved parser for zoological names...
Alexander Oppermann [Mon, 23 Mar 2015 14:30:32 +0000 (14:30 +0000)]
Improved parser for zoological names...

9 years agominor
Andreas Müller [Mon, 23 Mar 2015 12:24:34 +0000 (12:24 +0000)]
minor

9 years agofix bug in update script
Andreas Müller [Mon, 23 Mar 2015 12:15:31 +0000 (12:15 +0000)]
fix bug in update script

9 years agominor
Andreas Müller [Fri, 20 Mar 2015 21:14:41 +0000 (21:14 +0000)]
minor

9 years agounignore edit geoservice test
Andreas Müller [Fri, 20 Mar 2015 21:14:01 +0000 (21:14 +0000)]
unignore edit geoservice test

9 years agoadd listener for taxon name in determination event and run update script again
Andreas Müller [Fri, 20 Mar 2015 15:17:03 +0000 (15:17 +0000)]
add listener for taxon name in determination event and run update script again

9 years agominor
Andreas Müller [Fri, 20 Mar 2015 14:23:44 +0000 (14:23 +0000)]
minor

9 years agoupdate test H2 in remote webapp
Andreas Müller [Fri, 20 Mar 2015 14:19:48 +0000 (14:19 +0000)]
update test H2 in remote webapp

9 years agofix test environment for Identifier being Annotatable #4673
Andreas Müller [Fri, 20 Mar 2015 14:01:00 +0000 (14:01 +0000)]
fix test environment for Identifier being Annotatable #4673

9 years agofurther fixes for collectorTitle #4311
Andreas Müller [Fri, 20 Mar 2015 14:00:14 +0000 (14:00 +0000)]
further fixes for collectorTitle  #4311

9 years agofixing persistence tests on AgentBase.collectorTitle #4311
Andreas Müller [Fri, 20 Mar 2015 13:41:29 +0000 (13:41 +0000)]
fixing persistence tests on AgentBase.collectorTitle  #4311

9 years agoadd collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311
Andreas Müller [Fri, 20 Mar 2015 13:26:12 +0000 (13:26 +0000)]
add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase)  #4311

9 years agoupdate named area idInVocabularies if necessary #4140
Andreas Müller [Fri, 20 Mar 2015 12:55:50 +0000 (12:55 +0000)]
update named area idInVocabularies if necessary  #4140

9 years agomake identifier annotatable #4673
Andreas Müller [Fri, 20 Mar 2015 12:32:36 +0000 (12:32 +0000)]
make identifier annotatable #4673

9 years agomake identifier annotatable #4673
Andreas Müller [Fri, 20 Mar 2015 12:12:40 +0000 (12:12 +0000)]
make identifier annotatable #4673

9 years agominor
Andreas Müller [Fri, 20 Mar 2015 10:34:58 +0000 (10:34 +0000)]
minor

9 years agoupdate script for orphaned taxon node removal #2341
Andreas Müller [Fri, 20 Mar 2015 10:32:59 +0000 (10:32 +0000)]
update script for orphaned taxon node removal #2341

9 years agoupdate cdmlib poms from 3.4.1-SNAPSHOT to 3.5.0-SNAPSHOT
Andreas Müller [Thu, 19 Mar 2015 23:46:37 +0000 (23:46 +0000)]
update cdmlib poms from 3.4.1-SNAPSHOT to 3.5.0-SNAPSHOT

9 years agoadapt CommonService to allow collection save and add remotewebapp test H2 udpate
Andreas Müller [Thu, 19 Mar 2015 15:30:43 +0000 (15:30 +0000)]
adapt CommonService to allow collection save  and add remotewebapp test H2 udpate

9 years agoupdated cdmTest in remote webapp to new model
Andreas Müller [Thu, 19 Mar 2015 14:33:45 +0000 (14:33 +0000)]
updated cdmTest in remote webapp to new model

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:56:37 +0000 (13:56 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:56:19 +0000 (13:56 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:53:07 +0000 (13:53 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:49:54 +0000 (13:49 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:45:29 +0000 (13:45 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:29:30 +0000 (13:29 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:28:13 +0000 (13:28 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:24:42 +0000 (13:24 +0000)]
merge validation2 and model 3.5 into trunk

9 years ago - added option to cancel import
Patric Plitzner [Wed, 18 Mar 2015 08:35:15 +0000 (08:35 +0000)]
 - added option to cancel import

9 years ago - avoid duplicate taxon nodes in default classification
Patric Plitzner [Tue, 17 Mar 2015 17:07:23 +0000 (17:07 +0000)]
 - avoid duplicate taxon nodes in default classification

9 years ago - added test file
Patric Plitzner [Tue, 17 Mar 2015 17:06:22 +0000 (17:06 +0000)]
 - added test file

9 years agoremove import
Andreas Müller [Tue, 17 Mar 2015 14:55:23 +0000 (14:55 +0000)]
remove import

9 years ago - refactored code
Patric Plitzner [Tue, 17 Mar 2015 13:26:07 +0000 (13:26 +0000)]
 - refactored code

9 years ago - enhanced progress monitor
Patric Plitzner [Tue, 17 Mar 2015 13:19:46 +0000 (13:19 +0000)]
 - enhanced progress monitor

9 years ago - enhanced progress monitor
Patric Plitzner [Tue, 17 Mar 2015 13:07:10 +0000 (13:07 +0000)]
 - enhanced progress monitor
 - fixed multiple default classification creation

9 years ago - fixed potential NPE
Patric Plitzner [Tue, 17 Mar 2015 12:36:02 +0000 (12:36 +0000)]
 - fixed potential NPE

9 years ago - fixed taxon node matching for default classification
Patric Plitzner [Tue, 17 Mar 2015 11:46:38 +0000 (11:46 +0000)]
 - fixed taxon node matching for default classification

9 years agofix search for common names in editor and minor
Katja Luther [Tue, 17 Mar 2015 10:35:55 +0000 (10:35 +0000)]
fix search for common names in editor and minor

9 years ago - added new test cases (still temporarily @Ignore)
Patric Plitzner [Tue, 17 Mar 2015 10:04:50 +0000 (10:04 +0000)]
 - added new test cases (still temporarily @Ignore)

9 years ago - fixed potential NPE
Patric Plitzner [Tue, 17 Mar 2015 10:03:29 +0000 (10:03 +0000)]
 - fixed potential NPE

9 years ago - fixed potential NPE when adding taxon nodes for infra species
Patric Plitzner [Mon, 16 Mar 2015 20:10:48 +0000 (20:10 +0000)]
 - fixed potential NPE when adding taxon nodes for infra species

9 years ago - some code speed up
Patric Plitzner [Mon, 16 Mar 2015 15:49:24 +0000 (15:49 +0000)]
 - some code speed up
 - better default classification handling

9 years ago - fixed adding to default classification
Patric Plitzner [Mon, 16 Mar 2015 14:26:29 +0000 (14:26 +0000)]
 - fixed adding to default classification

9 years ago - temporarily added test to ignore
Patric Plitzner [Mon, 16 Mar 2015 14:03:53 +0000 (14:03 +0000)]
 - temporarily added test to ignore

9 years ago - implemented new config option "Move new taxa to default classification"
Patric Plitzner [Mon, 16 Mar 2015 13:50:38 +0000 (13:50 +0000)]
 - implemented new config option "Move new taxa to default classification"

9 years ago - added new config option "Move new taxa to default classification"
Patric Plitzner [Mon, 16 Mar 2015 13:18:45 +0000 (13:18 +0000)]
 - added new config option "Move new taxa to default classification"
 - do not add associations for identifications with preferredFlag=false

9 years ago - enhanced report
Patric Plitzner [Mon, 16 Mar 2015 09:10:53 +0000 (09:10 +0000)]
 - enhanced report

9 years ago - enhanced ggbn parsing
Patric Plitzner [Mon, 16 Mar 2015 08:58:56 +0000 (08:58 +0000)]
 - enhanced ggbn parsing
 - enhanced report

9 years ago - added test to ignore temporarily
Patric Plitzner [Thu, 12 Mar 2015 19:57:10 +0000 (19:57 +0000)]
 - added test to ignore temporarily

9 years ago - added test to ignore temporarily
Patric Plitzner [Thu, 12 Mar 2015 18:53:14 +0000 (18:53 +0000)]
 - added test to ignore temporarily

9 years ago - fixed rank parsing
Patric Plitzner [Thu, 12 Mar 2015 18:20:38 +0000 (18:20 +0000)]
 - fixed rank parsing
 - added deprecate annotation to config option

9 years agoswitching label and text in IdentifierType
Andreas Müller [Thu, 12 Mar 2015 16:03:58 +0000 (16:03 +0000)]
switching label and text in IdentifierType

9 years agolast updates to eFlora import
Andreas Müller [Thu, 12 Mar 2015 15:55:54 +0000 (15:55 +0000)]
last updates to eFlora import

9 years agoadd LSID and Alternative field number to Identifier Type vocabulary #4708, #4674
Andreas Müller [Thu, 12 Mar 2015 15:53:21 +0000 (15:53 +0000)]
add LSID and Alternative field number to Identifier Type vocabulary  #4708,  #4674

9 years ago - temp changes for name matching
Patric Plitzner [Thu, 12 Mar 2015 15:07:23 +0000 (15:07 +0000)]
 - temp changes for name matching

9 years agomoveTaxon() with uuids instead of objects as arguments
Katja Luther [Thu, 12 Mar 2015 11:20:27 +0000 (11:20 +0000)]
moveTaxon() with uuids instead of objects as arguments

9 years ago - some name matching enhancements
Patric Plitzner [Wed, 11 Mar 2015 15:17:10 +0000 (15:17 +0000)]
 - some name matching enhancements

9 years ago - reverted comment of test
Patric Plitzner [Wed, 11 Mar 2015 12:42:00 +0000 (12:42 +0000)]
 - reverted comment of test

9 years ago - added info messages to report
Patric Plitzner [Wed, 11 Mar 2015 09:50:03 +0000 (09:50 +0000)]
 - added info messages to report
 - enhanced taxon name matching

9 years agolatest updates to FotG import
Andreas Müller [Tue, 10 Mar 2015 16:49:32 +0000 (16:49 +0000)]
latest updates to FotG import

9 years agotype removed from SpecimenTypeParser
Andreas Müller [Tue, 10 Mar 2015 13:42:07 +0000 (13:42 +0000)]
type removed from SpecimenTypeParser

9 years agoupdate to Markup import
Andreas Müller [Tue, 10 Mar 2015 13:39:14 +0000 (13:39 +0000)]
update to Markup import

9 years agominor
Andreas Müller [Tue, 10 Mar 2015 10:31:12 +0000 (10:31 +0000)]
minor

9 years ago(no commit message)
Katja Luther [Tue, 10 Mar 2015 10:17:29 +0000 (10:17 +0000)]

9 years ago(no commit message)
Katja Luther [Tue, 10 Mar 2015 09:53:15 +0000 (09:53 +0000)]

9 years ago(no commit message)
Katja Luther [Tue, 10 Mar 2015 09:36:26 +0000 (09:36 +0000)]

9 years agofor infrageneric unranked rank adding [unranked] (Art.37.7 Melbourne Code)
Katja Luther [Tue, 10 Mar 2015 09:06:45 +0000 (09:06 +0000)]
for infrageneric unranked rank adding [unranked] (Art.37.7 Melbourne Code)
fixing bug with deletion of names and homotypicalGroups

9 years ago - fixed name matching when ignoring authorship
Patric Plitzner [Thu, 5 Mar 2015 13:05:01 +0000 (13:05 +0000)]
 - fixed name matching when ignoring authorship

9 years ago - fixed getTaxonForName()
Patric Plitzner [Wed, 4 Mar 2015 16:06:22 +0000 (16:06 +0000)]
 - fixed getTaxonForName()

9 years ago - added removeCountryFromLocalityText option to configurator (basically implementing...
Patric Plitzner [Wed, 4 Mar 2015 15:35:06 +0000 (15:35 +0000)]
 - added removeCountryFromLocalityText option to configurator (basically implementing the hack #4677)

9 years ago - shortened regex
Patric Plitzner [Wed, 4 Mar 2015 13:51:11 +0000 (13:51 +0000)]
 - shortened regex

9 years ago - fixed temporary geolocation hack
Patric Plitzner [Wed, 4 Mar 2015 13:34:32 +0000 (13:34 +0000)]
 - fixed temporary geolocation hack