cdmlib.git
14 months agoMerge branch 'release/5.39.0' 5.39.0
jenkins [Wed, 14 Jun 2023 15:24:26 +0000 (17:24 +0200)]
Merge branch 'release/5.39.0'

14 months agoupdating poms for branch'release/5.39.0' with non-snapshot versions
jenkins [Wed, 14 Jun 2023 15:12:17 +0000 (17:12 +0200)]
updating poms for branch'release/5.39.0' with non-snapshot versions

14 months agoupdating poms for 5.40.0-SNAPSHOT development
jenkins [Wed, 14 Jun 2023 14:58:37 +0000 (16:58 +0200)]
updating poms for 5.40.0-SNAPSHOT development

14 months agoRevert "ref #10322 by default use distribution treeDto" origin/release/5.39.0
Andreas Müller [Wed, 14 Jun 2023 11:14:06 +0000 (13:14 +0200)]
Revert "ref #10322 by default use distribution treeDto"

This reverts commit 2e46c8021c5ce6276203860af3f9e1652c4759b9.

14 months agoref #9502 remove tests without value (computed marker)
Andreas Müller [Wed, 14 Jun 2023 08:44:09 +0000 (10:44 +0200)]
ref #9502 remove tests without value (computed marker)

14 months agoref #9502 try to implement multiple parents for CondensedDistributionComposer (fix...
Andreas Müller [Wed, 14 Jun 2023 00:37:14 +0000 (02:37 +0200)]
ref #9502 try to implement multiple parents for CondensedDistributionComposer (fix Cuba tests and some cleanup)

14 months agoref #9502 fix handling for multiple parents in distribution filter (continue fix)
Andreas Müller [Wed, 14 Jun 2023 00:15:23 +0000 (02:15 +0200)]
ref #9502 fix handling for multiple parents in distribution filter (continue fix)

14 months agoref #9502 try to implement multiple parents for CondensedDistributionComposer (still...
Andreas Müller [Wed, 14 Jun 2023 00:00:06 +0000 (02:00 +0200)]
ref #9502 try to implement multiple parents for CondensedDistributionComposer (still needs cleanup)

14 months agoref #9502 fix handling for multiple parents in distribution filter (try to fix test)
Andreas Müller [Tue, 13 Jun 2023 23:58:20 +0000 (01:58 +0200)]
ref #9502 fix handling for multiple parents in distribution filter (try to fix test)

14 months agocleanup
Andreas Müller [Tue, 13 Jun 2023 15:16:44 +0000 (17:16 +0200)]
cleanup

14 months agocleanup
Andreas Müller [Tue, 13 Jun 2023 10:35:06 +0000 (12:35 +0200)]
cleanup

14 months agoref #9502 fix handling for multiple parents in distribution filter
Andreas Müller [Tue, 13 Jun 2023 10:34:49 +0000 (12:34 +0200)]
ref #9502 fix handling for multiple parents in distribution filter

14 months agoref #9502 add second method for loading distribution tree based on term tree (incl...
Andreas Müller [Tue, 13 Jun 2023 08:45:38 +0000 (10:45 +0200)]
ref #9502 add second method for loading distribution tree based on term tree (incl. annotations) - fix NPE

14 months agoref #9502 add second method for loading distribution tree based on term tree (incl...
Andreas Müller [Tue, 13 Jun 2023 08:13:53 +0000 (10:13 +0200)]
ref #9502 add second method for loading distribution tree based on term tree (incl. annotations)

14 months agoAllow retrieving a map for terms included in a term tree
Andreas Müller [Tue, 13 Jun 2023 07:55:55 +0000 (09:55 +0200)]
Allow retrieving a map for terms included in a term tree

14 months agoref #10346, ref #10327 fine tuning for IUCN cond distr str for subarea handling
Andreas Müller [Tue, 13 Jun 2023 07:41:22 +0000 (09:41 +0200)]
ref #10346, ref #10327 fine tuning for IUCN cond distr str for subarea handling

14 months agocleanup
Andreas Müller [Mon, 12 Jun 2023 20:54:01 +0000 (22:54 +0200)]
cleanup

14 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 17:31:17 +0000 (19:31 +0200)]
cleanup

14 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 17:31:17 +0000 (19:31 +0200)]
cleanup

14 months agoremove unreachable code
Katja Luther [Mon, 12 Jun 2023 07:50:26 +0000 (09:50 +0200)]
remove unreachable code

15 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 17:26:13 +0000 (19:26 +0200)]
cleanup

15 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 15:40:14 +0000 (17:40 +0200)]
cleanup

15 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 09:17:13 +0000 (11:17 +0200)]
cleanup

15 months agocleanup
Andreas Müller [Sat, 10 Jun 2023 08:35:50 +0000 (10:35 +0200)]
cleanup

15 months agoref #10335 fix NPE in TermNodeDto
Andreas Müller [Sat, 10 Jun 2023 08:34:06 +0000 (10:34 +0200)]
ref #10335 fix NPE in TermNodeDto

15 months agoref #10326 javadoc and further tests
Andreas Müller [Fri, 9 Jun 2023 22:26:46 +0000 (00:26 +0200)]
ref #10326 javadoc and further tests

15 months agoref #10326 try to fix incorrect alternativeRootArea handling
Andreas Müller [Fri, 9 Jun 2023 21:48:02 +0000 (23:48 +0200)]
ref #10326 try to fix incorrect alternativeRootArea handling

15 months agocleanup
Andreas Müller [Fri, 9 Jun 2023 20:29:10 +0000 (22:29 +0200)]
cleanup

15 months agoref #10326 add alternativeRootNodeMarkerType uuid to MarkerType
Andreas Müller [Fri, 9 Jun 2023 20:28:30 +0000 (22:28 +0200)]
ref #10326 add alternativeRootNodeMarkerType  uuid to MarkerType

15 months agorename CdmBase.isPersited -> isPersisted in cdmlib
Andreas Müller [Thu, 8 Jun 2023 19:27:35 +0000 (21:27 +0200)]
rename CdmBase.isPersited -> isPersisted in cdmlib

15 months agoref #10322 by default use distribution treeDto
Andreas Müller [Thu, 8 Jun 2023 16:26:55 +0000 (18:26 +0200)]
ref #10322 by default use distribution treeDto

15 months agoUpdating develop poms back to pre merge state
jenkins [Thu, 8 Jun 2023 15:42:18 +0000 (17:42 +0200)]
Updating develop poms back to pre merge state

15 months agoMerge branch 'master' into develop
jenkins [Thu, 8 Jun 2023 15:42:16 +0000 (17:42 +0200)]
Merge branch 'master' into develop

15 months agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 8 Jun 2023 15:42:15 +0000 (17:42 +0200)]
updating develop poms to master versions to avoid merge conflicts

15 months agoMerge branch 'release/5.38.0' 5.38.0
jenkins [Thu, 8 Jun 2023 15:42:09 +0000 (17:42 +0200)]
Merge branch 'release/5.38.0'

15 months agoupdating poms for branch'release/5.38.0' with non-snapshot versions
jenkins [Thu, 8 Jun 2023 15:28:32 +0000 (17:28 +0200)]
updating poms for branch'release/5.38.0' with non-snapshot versions

15 months agoupdating poms for 5.39.0-SNAPSHOT development
jenkins [Thu, 8 Jun 2023 14:25:43 +0000 (16:25 +0200)]
updating poms for 5.39.0-SNAPSHOT development

15 months agoref #9640 cleanup and add Chapter F 2019
Andreas Müller [Thu, 8 Jun 2023 14:23:39 +0000 (16:23 +0200)]
ref #9640 cleanup and add Chapter F 2019

15 months agoref #9640 fix forCode tests
Andreas Müller [Thu, 8 Jun 2023 13:24:18 +0000 (15:24 +0200)]
ref #9640 fix forCode tests

15 months agoref #9640 add some more codes to the NomenclaturalCodeEdition enum and add publicatio...
Andreas Müller [Thu, 8 Jun 2023 13:17:10 +0000 (15:17 +0200)]
ref #9640 add some more codes to the NomenclaturalCodeEdition enum and add publication year

15 months agoref #9640, ref #10302 implement NomenclaturalCodeEdition.toString same as label
Andreas Müller [Thu, 8 Jun 2023 11:48:00 +0000 (13:48 +0200)]
ref #9640, ref #10302 implement NomenclaturalCodeEdition.toString same as label

15 months agocleanup
Andreas Müller [Thu, 8 Jun 2023 11:47:27 +0000 (13:47 +0200)]
cleanup

15 months agoref #9640, ref #10302 remove pages as they are not part of the official "how to cite"
Andreas Müller [Thu, 8 Jun 2023 11:33:12 +0000 (13:33 +0200)]
ref #9640, ref #10302 remove pages as they are not part of the official "how to cite"

15 months agoref #9640, ref #10302 add citation data for St Louis Code
Andreas Müller [Thu, 8 Jun 2023 10:31:35 +0000 (12:31 +0200)]
ref #9640, ref #10302 add citation data for St Louis Code

15 months agoref #9640, ref #10302 add citation data for 2011 and 2005 codes
Andreas Müller [Thu, 8 Jun 2023 09:47:42 +0000 (11:47 +0200)]
ref #9640, ref #10302 add citation data for 2011 and 2005 codes

15 months agoref #10326 handle alternativeRootArea in condensedDistrString
Andreas Müller [Wed, 7 Jun 2023 22:05:26 +0000 (00:05 +0200)]
ref #10326 handle alternativeRootArea in condensedDistrString

15 months agocleanup
Andreas Müller [Wed, 7 Jun 2023 22:02:41 +0000 (00:02 +0200)]
cleanup

15 months agoref #10326 fix root switch and check empty and some javadoc
Andreas Müller [Wed, 7 Jun 2023 20:51:00 +0000 (22:51 +0200)]
ref #10326 fix root switch and check empty and some javadoc

15 months agoref #10326 handle alternativeRootArea in non-DTO based distribution tree (cont.)
Andreas Müller [Wed, 7 Jun 2023 19:39:01 +0000 (21:39 +0200)]
ref #10326 handle alternativeRootArea in non-DTO based distribution tree (cont.)

15 months agorevert unwanted cleanup changes
Andreas Müller [Wed, 7 Jun 2023 19:37:23 +0000 (21:37 +0200)]
revert unwanted cleanup changes

15 months agoref #10326 handle alternativeRootArea in non-DTO based distribution tree
Andreas Müller [Wed, 7 Jun 2023 19:31:23 +0000 (21:31 +0200)]
ref #10326 handle alternativeRootArea in non-DTO based distribution tree

15 months agocleanup (cont.)
Andreas Müller [Wed, 7 Jun 2023 19:30:45 +0000 (21:30 +0200)]
cleanup (cont.)

15 months agoref #10326 handle alternativeRootArea in DTO based distribution tree
Andreas Müller [Wed, 7 Jun 2023 19:13:55 +0000 (21:13 +0200)]
ref #10326 handle alternativeRootArea in DTO based distribution tree

15 months agocleanup
Andreas Müller [Wed, 7 Jun 2023 19:05:15 +0000 (21:05 +0200)]
cleanup

15 months agoref #9640, ref #10302 add uuid from phycobank reference to Shenzhen code
Andreas Müller [Wed, 7 Jun 2023 11:57:22 +0000 (13:57 +0200)]
ref #9640, ref #10302 add uuid from phycobank reference to Shenzhen code

15 months agocleanup (rename hiddenArea->fallbackArea) and others
Andreas Müller [Wed, 7 Jun 2023 11:56:15 +0000 (13:56 +0200)]
cleanup (rename hiddenArea->fallbackArea) and others

15 months agoref #9640, ref #10302 add codeEditon source to webservice
Andreas Müller [Wed, 7 Jun 2023 09:17:09 +0000 (11:17 +0200)]
ref #9640, ref #10302 add codeEditon source to webservice

15 months agoref #9640, ref #10302 add citation and source to NomenclaturalCodeEdition, at least...
Andreas Müller [Tue, 6 Jun 2023 22:04:37 +0000 (00:04 +0200)]
ref #9640, ref #10302 add citation and source to NomenclaturalCodeEdition, at least for Shenzhen 2017

15 months agoref #10335: add CdmBaseDto Interface
Katja Luther [Tue, 6 Jun 2023 19:51:54 +0000 (21:51 +0200)]
ref #10335: add CdmBaseDto Interface

15 months agojavadoc
Andreas Müller [Tue, 6 Jun 2023 14:01:51 +0000 (16:01 +0200)]
javadoc

15 months agoref #10327 fix iucn config handling
Andreas Müller [Mon, 5 Jun 2023 15:34:20 +0000 (17:34 +0200)]
ref #10327 fix iucn config handling

15 months agocleanup
Andreas Müller [Mon, 5 Jun 2023 14:08:17 +0000 (16:08 +0200)]
cleanup

15 months agoref #10327 taxon portal dto loader uses iucn distr info
Andreas Müller [Mon, 5 Jun 2023 13:19:38 +0000 (15:19 +0200)]
ref #10327 taxon portal dto loader uses iucn distr info

15 months agominor
Andreas Müller [Mon, 5 Jun 2023 12:21:10 +0000 (14:21 +0200)]
minor

15 months agoref #10327 first IUCN distribution string implementation
Andreas Müller [Mon, 5 Jun 2023 10:58:34 +0000 (12:58 +0200)]
ref #10327 first IUCN distribution string implementation

15 months agoref #10335: create AnnotationDto and MarkerDto and handle them when
Katja Luther [Mon, 5 Jun 2023 13:12:24 +0000 (15:12 +0200)]
ref #10335: create AnnotationDto and MarkerDto and handle them when
saving nodes

15 months agorename fallbackAreaMarker in configuration
Andreas Müller [Mon, 5 Jun 2023 07:57:12 +0000 (09:57 +0200)]
rename fallbackAreaMarker in configuration

15 months agoref #10336remove default value for etAl from taxon page service
Andreas Müller [Thu, 1 Jun 2023 17:33:10 +0000 (19:33 +0200)]
ref #10336remove default value for etAl from taxon page service

15 months agoCleanup
Andreas Müller [Thu, 1 Jun 2023 15:42:27 +0000 (17:42 +0200)]
Cleanup

15 months agofix #10222 remove elements from parts set to avoid model instances to be returned
Andreas Müller [Wed, 31 May 2023 10:50:26 +0000 (12:50 +0200)]
fix #10222 remove elements from parts set to avoid model instances to be returned

15 months agofix #10341 add source type "internal"
Andreas Müller [Wed, 31 May 2023 07:01:44 +0000 (09:01 +0200)]
fix #10341 add source type "internal"

15 months agoref #10206 add hibernate search annotations to DescriptionBase.publish
Andreas Müller [Tue, 30 May 2023 18:42:45 +0000 (20:42 +0200)]
ref #10206 add hibernate search annotations to DescriptionBase.publish

15 months agoref #10241 fix tests in other test classes
Andreas Müller [Tue, 30 May 2023 17:46:02 +0000 (19:46 +0200)]
ref #10241 fix tests in other test classes

15 months agoref #10241 handle all modifiers for formatting quantitative data and categorical...
Andreas Müller [Tue, 30 May 2023 17:13:29 +0000 (19:13 +0200)]
ref #10241 handle all modifiers for formatting quantitative data and categorical data

15 months agoref #4484, #8424, #9559, #10222, #10322 remove unpublished specimens from taxon page...
Andreas Müller [Tue, 30 May 2023 15:40:57 +0000 (17:40 +0200)]
ref #4484, #8424, #9559, #10222, #10322 remove unpublished specimens from taxon page webservice

15 months agoref #10334 implement Description publish flag for taxon page webservice
Andreas Müller [Tue, 30 May 2023 15:34:12 +0000 (17:34 +0200)]
ref #10334 implement Description publish flag for taxon page  webservice

15 months agoref #10206 add IPublishable to DescriptionBase
Andreas Müller [Tue, 30 May 2023 15:22:30 +0000 (17:22 +0200)]
ref #10206 add IPublishable to DescriptionBase

15 months agoref #10178: new methods for normalization of names
Belen Escobari [Tue, 30 May 2023 13:29:32 +0000 (15:29 +0200)]
ref #10178: new methods for normalization of names

15 months agoupdate test H2 in cdmlib
Andreas Müller [Tue, 30 May 2023 12:14:29 +0000 (14:14 +0200)]
update test H2 in cdmlib

15 months agoupdate test H2 in cdmlib
Andreas Müller [Tue, 30 May 2023 12:10:37 +0000 (14:10 +0200)]
update test H2 in cdmlib

15 months agoref #10337 further adapt recommendedXXX in Feature to use term collections
Andreas Müller [Tue, 30 May 2023 11:47:16 +0000 (13:47 +0200)]
ref #10337 further adapt recommendedXXX in Feature to use term collections

15 months agoref #10320 adapt update script for annotatable TermRelationBase
Andreas Müller [Tue, 30 May 2023 09:12:02 +0000 (11:12 +0200)]
ref #10320 adapt update script for annotatable TermRelationBase

15 months agofix #10311 assymmetry for misspelling and emendation
Andreas Müller [Tue, 30 May 2023 08:48:45 +0000 (10:48 +0200)]
fix #10311 assymmetry for misspelling and emendation

15 months agoref #10320 adapt test schema to annotatable TermRelationBase (cont. 2)
Andreas Müller [Sun, 28 May 2023 22:59:21 +0000 (00:59 +0200)]
ref #10320 adapt test schema to annotatable TermRelationBase (cont. 2)

15 months agominor
Andreas Müller [Sun, 28 May 2023 11:25:29 +0000 (13:25 +0200)]
minor

15 months agocleanup
Andreas Müller [Sun, 28 May 2023 08:54:50 +0000 (10:54 +0200)]
cleanup

15 months agoref #10320 adapt test schema to annotatable TermRelationBase (cont.)
Andreas Müller [Sun, 28 May 2023 08:53:57 +0000 (10:53 +0200)]
ref #10320 adapt test schema to annotatable TermRelationBase (cont.)

15 months agoref #10328 add maxXXX to jaxb
Andreas Müller [Sun, 28 May 2023 08:45:30 +0000 (10:45 +0200)]
ref #10328 add maxXXX to jaxb

15 months agoref #10206 add publish flag to description base
Andreas Müller [Sun, 28 May 2023 08:13:40 +0000 (10:13 +0200)]
ref #10206 add publish flag to description base

15 months agocleanup
Andreas Müller [Sun, 28 May 2023 07:56:54 +0000 (09:56 +0200)]
cleanup

15 months agoref #10328 add maxXXX to Feature
Andreas Müller [Sun, 28 May 2023 07:56:12 +0000 (09:56 +0200)]
ref #10328 add maxXXX to Feature

15 months agoref #10320 adapt test schema to annotatable TermRelationBase
Andreas Müller [Sun, 28 May 2023 07:39:17 +0000 (09:39 +0200)]
ref #10320 adapt test schema to annotatable TermRelationBase

15 months agojavadoc
Andreas Müller [Sun, 28 May 2023 07:34:36 +0000 (09:34 +0200)]
javadoc

15 months agoref #10320 let TermRelationBase inherit from AnnotableEntity
Andreas Müller [Sun, 28 May 2023 07:22:10 +0000 (09:22 +0200)]
ref #10320 let TermRelationBase inherit from AnnotableEntity

15 months agoupgrade metaData and schema updater to 5.38.0
Andreas Müller [Sun, 28 May 2023 07:20:36 +0000 (09:20 +0200)]
upgrade metaData and schema updater to 5.38.0

15 months agoref #10337 fix httpTermCollectionService
Andreas Müller [Tue, 30 May 2023 10:24:09 +0000 (12:24 +0200)]
ref #10337 fix httpTermCollectionService

15 months agorelated to #10337 add list(Set<TermType>) to vocabulary service
Andreas Müller [Tue, 30 May 2023 09:39:27 +0000 (11:39 +0200)]
related to #10337 add list(Set<TermType>) to vocabulary service

15 months agoref #10337 add list(Set<TermType>) to collection service
Andreas Müller [Tue, 30 May 2023 09:39:04 +0000 (11:39 +0200)]
ref #10337 add list(Set<TermType>) to collection service

15 months agoref #10337 add term collection service to httpInvokerServices
Andreas Müller [Tue, 30 May 2023 09:13:25 +0000 (11:13 +0200)]
ref #10337 add term collection service to httpInvokerServices

15 months agocleanup
Andreas Müller [Tue, 30 May 2023 09:12:53 +0000 (11:12 +0200)]
cleanup